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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057171 ID=TCONS_00057171|Name=TCONS_00057171|organism=Clytia hemisphaerica|type=transcript|length=2544bpRun BLAST on NCBI protein sequence of TCONS_00057171-protein >TCONS_00057171-protein ID=TCONS_00057171-protein|Name=TCONS_00057171-protein|organism=Clytia hemisphaerica|type=polypeptide|length=674bp MILELLMWTVFVASSVILVLWILTSPPADRKTRTAPENEDRYAKNRFIPNRun BLAST on NCBI transcript from alignment at scaffold_286:77377..120875+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057171 ID=TCONS_00057171|Name=TCONS_00057171|organism=Clytia hemisphaerica|type=transcript|length=43499bp|location=Sequence derived from alignment at scaffold_286:77377..120875+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_286:77377..120875+ >TCONS_00057171 ID=TCONS_00057171|Name=TCONS_00057171|organism=Clytia hemisphaerica|type=CDS|length=22275bp|location=Sequence derived from alignment at scaffold_286:77377..120875+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057171 vs. Swiss-Prot (Human)
Match: RETST (All-trans-retinol 13,14-reductase OS=Homo sapiens GN=RETSAT PE=1 SV=2) HSP 1 Score: 239.195 bits (609), Expect = 5.672e-68 Identity = 184/623 (29.53%), Postives = 285/623 (45.75%), Query Frame = 2
Query: 170 PPADRKTRTAPENEDRYAKNRFIPNKVPKDADXXXXXXXXXXXXCASILSKYGKKVIVLEHHDKLGGCTHTFSWSRANMAEEGHTTCEFDTGCHYTAVDMSMPTMRSGAVMKYL----TEGQAKWHDLGDPYDCVVF--PHDSKVDPGCPNNDAYNFLCRKDRLINEITQKINPNEPLVPQRLNAFLQFCRHARGTIVKMFFVRMLPRWVEKLLDF--LTIPYYTYGKLTTQYVLSAMLEHGFTEEEVLAQKELPKEPEIDLPNTWNRMKGVMVHPLGDYACQPSDSTVVAHALTACYYMNGAAYTSGQTQSISNSCAKVVYEHGGECFVNAHVEEIIL-KEGKAVGVRVCKATSMEGLKSADERPEMTELYAPIIINATGMHTLYNKLLSPE---LPLVKEYKTTNKCIPSFGHNYLFVAIKGDADEVGIPVTNTWYFNGYDTDNCFDKYFENPTEHRP---PTVYLGFPCTKDPTWKKRFPGISNCILISDAKYEWFEKWQDMRTHKRGDEYDQYKQKFADKLLEVLYEKVPQVKGKVLWYECGTPVSDSNFLQSFRGGSYGTRCNLEFANKDNSRW------VMRADTEIPNLFMAGQDAWTPAVAGAMYGGMLGAIKVL 1975
PPA T E + K F N+VP+ DV+VIGSG GG+ A+IL+K GK+V+VLE H K GGC HTF G EFDTG HY M G++ +++ TEGQ W L P+D +V P+ K P AY I + +K E ++ + +++ + ++ LP V +LLD L + + + +TQ + + + G + E ++ V+ + Y P+ S HAL +YM G Y G + I+ V+ GG A V+ ++L GKA GV V K E+ +Y PI+++ G+ Y LL LP VK+ T + P G +F+ ++G +++ +P TN + + D D ++Y P E P ++ FP KDPTW+ RFPG S I++ YEWFE+WQ KRG +Y+ +K F + + V+ + PQ++GKV G+P+++ +L + RG YG A+ D R +RA + IPNL++ GQD +T + GA+ G +L + +L
Sbjct: 40 PPAPLVTDK--EARKKVLKQAFSANQVPEKLDVVVIGSGFGGLAAAAILAKAGKRVLVLEQHTKAGGCCHTF----------GKNGLEFDTGIHYIG------RMEEGSIGRFILDQITEGQLDWAPLSSPFDIMVLEGPNGRKEYPMYSGEKAY---------IQGLKEKFPQEEAII----DKYIKLVKVVSSGAPHAILLKFLPLPVVQLLDRCGLLTRFSPFLQASTQSLAEVLQQLGASSE----------------------LQAVLSYIFPTYGVTPNHSAFSMHALLVNHYMKGGFYPRGGSSEIAFHTIPVIQRAGGAVLTKATVQSVLLDSAGKACGVSVKKGH------------ELVNIYCPIVVSNAGLFNTYEHLLPGNARCLPGVKQQLGTVR--PGLGMTSVFICLRGTKEDLHLPSTNYYVYYDTDMDQAMERYVSMPREEAAEHIPLLFFAFPSAKDPTWEDRFPGRSTMIMLIPTAYEWFEEWQAELKGKRGSDYETFKNSFVEASMSVVLKLFPQLEGKVESVTAGSPLTNQFYLAAPRGACYG-------ADHDLGRLHPCVMASLRAQSPIPNLYLTGQDIFTCGLVGALQGALLCSSAIL 588 The following BLAST results are available for this feature:
BLAST of TCONS_00057171 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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