TCONS_00057127 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057127
Unique NameTCONS_00057127
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1137

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057127 ID=TCONS_00057127|Name=TCONS_00057127|organism=Clytia hemisphaerica|type=transcript|length=1137bp
gcaattattttttcagtaaCATGTTTTTCTTATACATATCTTAatagttt
aaattttcaattttttgcatatAAACCTctattttataaatcaaaatttt
acaaaatttacaaaaaatgaacATTCAAATCTATTATCTATTGACAAAAA
TAATGGACAAAATGTATATAATGAATGAGTTTTGGtgttgaaatgaaaat
gttggTAATTTATTGATTGTTTATTGTTGTTTTAGTATCTGGTGTTACAT
GTTTGTAGTGTCGAAAAACTCCATGGCTTTGCATCGTTTGAGCTTGACAT
AGCGTCACGTTCCTGTATTTGATGTTGTTTGGTACAATATACTCGATTAT
TTCACTCATCATGGCTTGGTACTTTTAAACCATCGGTTCGTTTCTGGACA
CCTGAATATTGTAAAGAGTTCATAAAAATGATAGATATGCTGTCCAGAGA
TCAATCAGTAACCGTATATCATGATTCATTATCAGCGAAAATATTGCTTC
CCTCTAACACCATCCAATAATTTGAATGCCGACActacaaaaatcgaaat
aagaaaTTCAATCATCCACAATCAATTTCCAAAGTTTCTTCGCCACTGTT
ATGCAGATATGATTGAAAATACACACATTAACGTATCCTATGCTTGACCG
AtgtatttttcaaagcttttacGTCATTACAGTTCGTTTTTGGAGTATTA
TGCTGTAATGTCTTATGGTACTTATACCTATCCTGTTTCTAATTCAATTT
GTCTCGTTATTCGAAATACTGCTGGGCCTGGAAATAATGAAATTGGAATT
GAACAATAATGGTAGACTTAAATTCAACTGGACAGTATTTGTCAATTTTG
CAAAGGATCTTGTACAATAgtaattttgtttatatttaaaaaCAACTACA
TGATTATCTAAAACAAcattattcattttatttgtaaattgaaaattata
aaattgaaGTTGTTTCAAAGTTCGTTAATCGACCCTATTGtgacaaaatt
tgatttttgaaccCACTTTTCCTAAGCCAAGAGTAGTTGAAATCTTTATC
CTGTGATCACATGCTTTTTGCTACTCTCGATAATCTTTTAATCTATCTTA
TCCTTTGATCTATCTCATCCTttcgggctgaccttcc
Run BLAST on NCBI

transcript from alignment at scaffold_285:582917..584458-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057127 ID=TCONS_00057127|Name=TCONS_00057127|organism=Clytia hemisphaerica|type=transcript|length=1542bp|location=Sequence derived from alignment at scaffold_285:582917..584458- (Clytia hemisphaerica)
GCAATTATTTTTTCAGTAACATGTTTTTCTTATACATATCTTAATAGTTT
AAATTTTCAATTTTTTGCATATAAACCTCTATTTTATAAATCAAAATTTT
ACAAAATTTACAAAAAATGAACATTCAAATCTATTATCTATTGACAAAAA
TAATGGACAAAATGTATATAATGAATGAGTTTTGGTGTTGAAATGAAAAT
GTTGGTAATTTATTGATTGTTTATTGTTGTTTTAGTATCTGGTGTTACAT
GTTTGTAGTGTCGAAAAACTCCATGGCTTTGCATCGTTTGAGCTTGACAT
AGCGTCACGTTCCTGTATTTGATGTTGTTTGGTACAATATACTCGATTAT
TTCACTCATCATGGCTTGGTACTTTTAAACCATCGGTTCGTTTCTGGACA
CCTGAATATTGTAAAGAGTTCATAAAAATGATAGGTAAGCTAAAGGTCTC
TTTTTGATCAATTTACGATAGAAAAATGTTGACACTTGACGTTCATTTCT
AGGTCTTTTTTACAAAGCAATCATTTTGCAATTGCAGTACGCGACCGTGA
ATAATCTAAGATTGAAAATGTGAAATGACTTTGTTCATATTATTTATTAT
TTACCTGTGTATTTGACTTTGATATCTTCATTGTTTGTTGTAGATATGCT
GTCCAGAGATCAATCAGTAACCGTATATCATGATTCATTATCAGCGAAAA
TATTGCTTCCCTCTAACACCATCCAATAATTTGAATGCCGACACTACAAA
AATCGAAATAAGGTACTATAAGTCTCCAAAATGACCTACATTAAGTGTTT
GCATAGTGGCCAATTGGTCAATTGATATTTTGATGAATGAGTATTATGTC
GAAAAAGTGCGAGTCTACTGAAATGATTACTTTATAGATTATACCTATCC
ATGAATTGACCTCTTTTTTTAATTTGGAGAAAATAACTTGTAATTTTTTT
TTCTACAGAAATTCAATCATCCACAATCAATTTCCAAAGTTTCTTCGCCA
CTGTTATGCAGATATGATTGAAAATACACACATTAACGTATCCTATGCTT
GACCGATGTATTTTTCAAAGCTTTTACGTCATTACAGTTCGTTTTTGGAG
TATTATGCTGTAATGTCTTATGGTACTTATACCTATCCTGTTTCTAATTC
AATTTGTCTCGTTATTCGAAATACTGCTGGGCCTGGAAATAATGAAATTG
GAATTGAACAATAATGGTAGACTTAAATTCAACTGGACAGTATTTGTCAA
TTTTGCAAAGGATCTTGTACAATAGTAATTTTGTTTATATTTAAAAACAA
CTACATGATTATCTAAAACAACATTATTCATTTTATTTGTAAATTGAAAA
TTATAAAATTGAAGTTGTTTCAAAGTTCGTTAATCGACCCTATTGTGACA
AAATTTGATTTTTGAACCCACTTTTCCTAAGCCAAGAGTAGTTGAAATCT
TTATCCTGTGATCACATGCTTTTTGCTACTCTCGATAATCTTTTAATCTA
TCTTATCCTTTGATCTATCTCATCCTTTCGGGCTGACCTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035986XLOC_035986Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057127-exon-scaffold_285-1575043694:584025..584458TCONS_00057127-exon-scaffold_285-1575043694:584025..584458Clytia hemisphaericaexon
TCONS_00057127-exon-scaffold_285-1575043694:583697..583815TCONS_00057127-exon-scaffold_285-1575043694:583697..583815Clytia hemisphaericaexon
TCONS_00057127-exon-scaffold_285-1575043694:582917..583500TCONS_00057127-exon-scaffold_285-1575043694:582917..583500Clytia hemisphaericaexon
TCONS_00057127-exon-scaffold_285-1510915933:584025..584458TCONS_00057127-exon-scaffold_285-1510915933:584025..584458Clytia hemisphaericaexon
TCONS_00057127-exon-scaffold_285-1510915933:583697..583815TCONS_00057127-exon-scaffold_285-1510915933:583697..583815Clytia hemisphaericaexon
TCONS_00057127-exon-scaffold_285-1510915933:582917..583500TCONS_00057127-exon-scaffold_285-1510915933:582917..583500Clytia hemisphaericaexon
TCONS_00057127-exon-scaffold_285-1491911889:584025..584458TCONS_00057127-exon-scaffold_285-1491911889:584025..584458Clytia hemisphaericaexon
TCONS_00057127-exon-scaffold_285-1491911889:583697..583815TCONS_00057127-exon-scaffold_285-1491911889:583697..583815Clytia hemisphaericaexon
TCONS_00057127-exon-scaffold_285-1491911889:582917..583500TCONS_00057127-exon-scaffold_285-1491911889:582917..583500Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:582917..584458 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.563139	0.671051	0.0708461	0	11.0069	6.64063	9.35914	8.98769	3.51429	3.94319	6.5995	5.02382	3.63176	2.16198	2.1974	2.71242	2.94865	2.2825	6.67905	5.42899	8.93924	11.9374	5.36182	5.71303	1.14205	3.29759	8.95157	7.96583	5.22921	4.27001
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057127 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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