TCONS_00057156 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057156
Unique NameTCONS_00057156
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length762

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057156 ID=TCONS_00057156|Name=TCONS_00057156|organism=Clytia hemisphaerica|type=transcript|length=762bp
AAGTATagctatttttgaaaatcattcgGACACAGATTGCAAAGTTTGCA
GTTTTAGTATGGAGCCATGTGAGTTCAAATTAATCACAATTGAATTTTTG
ACTCTTGCAAAGATGATAGAAGTTgggaaaaaattcaacttttcttatgc
agaaaaattaaaacaacatACATTTGTACGTATATGTGATCGTTGTGGTG
GTAAAGACGAATCAGTTATTTCACCTGCATTTGTTGACTTGACAGTATTT
ATTGAGCAGCAGAAAAACAAGATGGGTGAATTTTCATGGACCATGTCCAT
TTTTGAACAAAACATTGATATAGCCTCTTTGAATATTGATGTACCAAAAG
TTCTCACCGCTAACACTgtggaaatcttttttcaaactgttggGGAATTT
CGGATCTGTGAAGGAAATTATGATGTTCCAAAGGTTATAGAGAAACGTCA
GAAGATAATAAGGTCACAGTGACCAACGTGATAACACTCGGCTAGAGTGT
AAAGATTTTACACCATTTGAAAAGCCCCAGCCAACCATACGTCACAAGGA
TTGTCCTGGGCTGATTTTTGGACCTGCTACAAGTGAACGATGTGAGAAAT
GCTCAGTAGGAAGAAAATCgctgttgatacttgaaaaACGACCATCATTA
ACGTCAACCAAGCCTAAACCGAAAAGACCCCATTCTTCACTGTCCAAGAA
ACAATTGAAAATAAGGTTGAGTGATGTCTCTCAAGAGAATGCCAAACTTA
AGTTGAGCATCA
Run BLAST on NCBI

protein sequence of TCONS_00057156-protein

>TCONS_00057156-protein ID=TCONS_00057156-protein|Name=TCONS_00057156-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
SIAIFENHSDTDCKVCSFSMEPCEFKLITIEFLTLAKMIEVGKKFNFSYA
EKLKQHTFVRICDRCGGKDESVISPAFVDLTVFIEQQKNKMGEFSWTMSI
FEQNIDIASLNIDVPKVLTANTVEIFFQTVGEFRICEGNYDVPKVIEKRQ
KIIRSQ
Run BLAST on NCBI

transcript from alignment at scaffold_285:538800..539561

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057156 ID=TCONS_00057156|Name=TCONS_00057156|organism=Clytia hemisphaerica|type=transcript|length=762bp|location=Sequence derived from alignment at scaffold_285:538800..539561 (Clytia hemisphaerica)
TGATGCTCAACTTAAGTTTGGCATTCTCTTGAGAGACATCACTCAACCTT
ATTTTCAATTGTTTCTTGGACAGTGAAGAATGGGGTCTTTTCGGTTTAGG
CTTGGTTGACGTTAATGATGGTCGTttttcaagtatcaacagcGATTTTC
TTCCTACTGAGCATTTCTCACATCGTTCACTTGTAGCAGGTCCAAAAATC
AGCCCAGGACAATCCTTGTGACGTATGGTTGGCTGGGGCTTTTCAAATGG
TGTAAAATCTTTACACTCTAGCCGAGTGTTATCACGTTGGTCACTGTGAC
CTTATTATCTTCTGACGTTTCTCTATAACCTTTGGAACATCATAATTTCC
TTCACAGATCCGAAATTCCccaacagtttgaaaaaagatttccacAGTGT
TAGCGGTGAGAACTTTTGGTACATCAATATTCAAAGAGGCTATATCAATG
TTTTGTTCAAAAATGGACATGGTCCATGAAAATTCACCCATCTTGTTTTT
CTGCTGCTCAATAAATACTGTCAAGTCAACAAATGCAGGTGAAATAACTG
ATTCGTCTTTACCACCACAACGATCACATATACGTACAAATGTatgttgt
tttaatttttctgcataagaaaagttgaattttttcccAACTTCTATCAT
CTTTGCAAGAGTCAAAAATTCAATTGTGATTAATTTGAACTCACATGGCT
CCATACTAAAACTGCAAACTTTGCAATCTGTGTCcgaatgattttcaaaa
atagctATACTT

Coding sequence (CDS) from alignment at scaffold_285:538800..539561

>TCONS_00057156 ID=TCONS_00057156|Name=TCONS_00057156|organism=Clytia hemisphaerica|type=CDS|length=471bp|location=Sequence derived from alignment at scaffold_285:538800..539561 (Clytia hemisphaerica)
TCACTGTGACCTTATTATCTTCTGACGTTTCTCTATAACCTTTGGAACAT
CATAATTTCCTTCACAGATCCGAAATTCCccaacagtttgaaaaaagatt
tccacAGTGTTAGCGGTGAGAACTTTTGGTACATCAATATTCAAAGAGGC
TATATCAATGTTTTGTTCAAAAATGGACATGGTCCATGAAAATTCACCCA
TCTTGTTTTTCTGCTGCTCAATAAATACTGTCAAGTCAACAAATGCAGGT
GAAATAACTGATTCGTCTTTACCACCACAACGATCACATATACGTACAAA
TGTatgttgttttaatttttctgcataagaaaagttgaattttttcccAA
CTTCTATCATCTTTGCAAGAGTCAAAAATTCAATTGTGATTAATTTGAAC
TCACATGGCTCCATACTAAAACTGCAAACTTTGCAATCTGTGTCcgaatg
attttcaaaaatagctATACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036015XLOC_036015Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057156-proteinTCONS_00057156-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057156-exon-scaffold_285-1491911889:538800..539561TCONS_00057156-exon-scaffold_285-1491911889:538800..539561Clytia hemisphaericaexon
TCONS_00057156-exon-scaffold_285-1510915933:538800..539561TCONS_00057156-exon-scaffold_285-1510915933:538800..539561Clytia hemisphaericaexon
TCONS_00057156-exon-scaffold_285-1575043694:538800..539561TCONS_00057156-exon-scaffold_285-1575043694:538800..539561Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:538800..539561 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.263177	0	0	0	0	0	0	0	0	0	0.0524766	0	0	0	0	0.0834625	0.0681982	0	0	0	0	0	0	0	0.169631	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057156 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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