TCONS_00056905 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056905
Unique NameTCONS_00056905
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1125

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056905 ID=TCONS_00056905|Name=TCONS_00056905|organism=Clytia hemisphaerica|type=transcript|length=1125bp
CGAAGGGGGAGGGGGACTTTGctgtttgcgaggtgacggaaGCTCAAGTT
CGAGAATCGACCCTGTATGAGATTGAGTCTATCTAAGGCCGGGGGGGgga
ctgaccttgacggccgacggagATGTCTTGAATTTAGTATTATttggaac
aattttttttgaaaaatatttttccaaacaatTTGTTTCTTCGTTTTCAT
TACATTTTAACATGACAACGCTCGGCCACCATATACAGATGGTTATGACA
TGTCTCCTTAGCATCCAGCATCCAGCGTGTACAAAATCAACGAAATGAAG
TCGTGAATTCATCTGTTCCACGTGCGAGatcaagaaacaacaaaaataaa
acggAAAAGGTaatgacaaaatttgaaatcgatgattataattctttttt
aaattctaccGACTCGACCGTTTTGTTACGAATAAATAACAATACCCCTT
TTGTATTTTAATATAATATACGCTGTGTTAATACGCTGTGAGGCTGAAAG
GATAAATAGTGTGGGTGTGGAACAGTTTTGATCATTCTGAAATTGTCTTC
GAGAAGAACAGTTGGATCACGAAACAGCAAGCATGAAGTCAACAACAATC
ATCATTTTCGCCGCCATTTTGGCTATGTGTTTGGTTGCCGAGGGCAACCC
AATGGATGAAAGCGAAAGCAGACCGGAAATGAACTTTGAGGATGAATTTG
ACGGGGGAATTTACGCGGATCCAATTTACGAGGATGTTGAAAATGACGAA
GATTCGGAcgaaaaaccaaagaaaatttgTGTCGCTCACTGCAACGGATG
GTTCTTCGGATGAATTAACCAATCACATTAGACTTTCAAATCATCAAGAA
CACTTCAGtaatttataatatattttctttttgtagaATATATTCGCCAT
TATGGGAATAAGTTCATGTTATAAATGTTTCTTCTGTTCCATATAAATGT
ACAAGTTCCACCCTGGTCTAGATTAAATTGTCCATAACTCTAATTTCGGT
CACCCATAGAGATGCAAAATACGATAAAAAAGAAACTATTCCAAAATTTT
AATCAACACTAAGTGATaattttatggacctacctggttatcaaaactaa
tcaatgaatattaaaacaatgaaac
Run BLAST on NCBI

transcript from alignment at scaffold_284:1434842..1436358+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056905 ID=TCONS_00056905|Name=TCONS_00056905|organism=Clytia hemisphaerica|type=transcript|length=1517bp|location=Sequence derived from alignment at scaffold_284:1434842..1436358+ (Clytia hemisphaerica)
CGAAGGGGGAGGGGGACTTTGctgtttgcgaggtgacggaaGCTCAAGTT
CGAGAATCGACCCTGTATGAGATTGAGTCTATCTAAGGCCGGGGGGGgga
ctgaccttgacggccgacggagATGTCTTGAATTTAGTATTATttggaac
aattttttttgaaaaatatttttccaaacaatTTGTTTCTTCGTTTTCAT
TACATTTTAACATGACAACGCTCGGCCACCATATACAGATGGTTATGACA
TGTCTCCTTAGCATCCAGCATCCAGCGTGTACAAAATCAACGAAATGAAG
TCGTGAATTCATCTGTTCCACGTGCGAGatcaagaaacaacaaaaataaa
acggAAAAGGTaatgacaaaatttgaaatcgatgattataattctttttt
aaattctaccGACTCGACCGTTTTGTTACGAATAAATAACAATACCCCTT
TTGTATTTTAATATAATATACGCTGTGTTAATACGCTGTGAGGCTGAAAG
GATAAATAGTGTGGGTGTGGAACAGTTTTGATCATTCTGAAATTGTCTTC
GAGAAGAACAGTTGGATCACGAAACAGCAAGGTCAGTCTATATAACTTCT
TTTTTTGTGAGTTTGAAGTACCAAAAAGGGAGTGGTGATACCTAAGACAC
ACGACCGTGAAAAATTCGAGACCCCTGGTAAATACATTAATAAGATCCCT
TTAAACGAATTGGTGCTTTTAGTTAATTCTCATTACCAAATTGATGGGTT
GatgaaaattttataattataaCGTTTATTGAAGTAAAGGGTTGACAGAT
ATCTCTCAAATTTTTAGCATGAAGTCAACAACAATCATCATTTTCGCCGC
CATTTTGGCTATGTGTTTGGTTGCCGAGGGCAACCCAATGGATGAAAGCG
AAAGCAGACCGGAAATGAACTTTGAGGATGAATTTGACGGGGGAATTTAC
GCGGATCCAATTTACGAGGATGTTGAAAATGACGAAGATTCGGAcgaaaa
accaaagaaaatttggtgAGTTTTCCATAAAACGTACAACAAAAGCAACC
ATTTTTGTCTGTAAAGCAATAGCCTGCCGAGGATGCATGTGCCTAAATTT
AACTAGTTCCTATAAAAAGGGTTCATAATATTCCttgatattcaaaatat
ttttctcctttttgtttTTAGTGTCGCTCACTGCAACGGATGGTTCTTCG
GATGAATTAACCAATCACATTAGACTTTCAAATCATCAAGAACACTTCAG
taatttataatatattttctttttgtagaATATATTCGCCATTATGGGAA
TAAGTTCATGTTATAAATGTTTCTTCTGTTCCATATAAATGTACAAGTTC
CACCCTGGTCTAGATTAAATTGTCCATAACTCTAATTTCGGTCACCCATA
GAGATGCAAAATACGATAAAAAAGAAACTATTCCAAAATTTTAATCAACA
CTAAGTGATaattttatggacctacctggttatcaaaactaatcaatgaa
tattaaaacaatgaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035848XLOC_035848Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056905-exon-scaffold_284-1491911889:1434842..1435422TCONS_00056905-exon-scaffold_284-1491911889:1434842..1435422Clytia hemisphaericaexon
TCONS_00056905-exon-scaffold_284-1510915933:1434842..1435422TCONS_00056905-exon-scaffold_284-1510915933:1434842..1435422Clytia hemisphaericaexon
TCONS_00056905-exon-scaffold_284-1575043694:1434842..1435422TCONS_00056905-exon-scaffold_284-1575043694:1434842..1435422Clytia hemisphaericaexon
TCONS_00056905-exon-scaffold_284-1491911889:1435659..1435856TCONS_00056905-exon-scaffold_284-1491911889:1435659..1435856Clytia hemisphaericaexon
TCONS_00056905-exon-scaffold_284-1510915933:1435659..1435856TCONS_00056905-exon-scaffold_284-1510915933:1435659..1435856Clytia hemisphaericaexon
TCONS_00056905-exon-scaffold_284-1575043694:1435659..1435856TCONS_00056905-exon-scaffold_284-1575043694:1435659..1435856Clytia hemisphaericaexon
TCONS_00056905-exon-scaffold_284-1491911889:1436013..1436358TCONS_00056905-exon-scaffold_284-1491911889:1436013..1436358Clytia hemisphaericaexon
TCONS_00056905-exon-scaffold_284-1510915933:1436013..1436358TCONS_00056905-exon-scaffold_284-1510915933:1436013..1436358Clytia hemisphaericaexon
TCONS_00056905-exon-scaffold_284-1575043694:1436013..1436358TCONS_00056905-exon-scaffold_284-1575043694:1436013..1436358Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:1434842..1436358 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.29786	1.0278	0.995797	1.70129	0	0.260968	0.188959	1.91137	135.03	33.8964	189.56	289.07	22.6152	15.502	101.949	89.6583	1.45907	1.80891	0.951297	0.706431	0.442175	1.10173	0.156257	0.26386	0	0	0.215553	0.471217	0.594503	0.433307
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056905 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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