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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056881 ID=TCONS_00056881|Name=TCONS_00056881|organism=Clytia hemisphaerica|type=transcript|length=2576bpRun BLAST on NCBI transcript from alignment at scaffold_284:964572..981865+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056881 ID=TCONS_00056881|Name=TCONS_00056881|organism=Clytia hemisphaerica|type=transcript|length=17294bp|location=Sequence derived from alignment at scaffold_284:964572..981865+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00056881 vs. Swiss-Prot (Human)
Match: SERC2 (Serine incorporator 2 OS=Homo sapiens GN=SERINC2 PE=2 SV=3) HSP 1 Score: 267.314 bits (682), Expect = 1.587e-79 Identity = 168/429 (39.16%), Postives = 244/429 (56.88%), Query Frame = 2
Query: 161 MTRLMYLFLIIVGILLSSIFLIPSVKEALAKKP-----PDDIPFISQKSYCQYITNADCADVMGFESVYRVWFAXXXXXXXXXXXTVGVKSSKDCRGSLQNGFWFFKLLIIAGIMVGAFFIPRGDFETAWLYXXXXXXXXXXXXQVVYLIDFAHSWTESWQDNAE--DNKCYAFGFLFCSFIMYGFSIAGVVSMYYYFTQSDGCHLNKALISINLILCIIVSIVAVLPAIQEANPRSGLLQAGMVTLYVTYLTFSAVSNVPTSTCPKGIETIPGGGTSMM--------------VVGIVIAVLTIFVVSLKSS-ADGMGTPITDEEAPVQ---------------KVSDDEEEGVQYNYGVFHVLCLLASLYIMMVMTNWLKPETVGNGYSFQPNLASVWVQIVSSWLCLVLYVWTLIAPIACPDRQFS 1336
++RL++ F + +G+L+S I L P V+ L K P IP + Q + DC ++G+ +VYR+ FA FF +L + V SS+D R ++QNGFWFFK LI+ G+ VGAF+IP G F W Y G++G LFI IQ+V LIDFAHSW + W AE D++ + G F + + Y SIA V M+ Y+T+ GCH K IS+NL C+ VSI AVLP +Q+A P SGLLQA ++TLY ++T+SA+S++P C + T G T + +VG++I +L +SL+SS + + + EE P + D+E++GV Y+Y FH +LASL++MM +TNW KP G +VWV+I +SW L+LY+WTL+AP+ +R FS
Sbjct: 37 VSRLIFTFFLFLGVLVSIIMLSPGVESQLYKLPWVCEEGAGIPTVLQG-------HIDCGSLLGYRAVYRMCFATAAFFFFFTLLMLCVSSSRDPRAAIQNGFWFFKFLILVGLTVGAFYIPDGSFTNIWFYFGVVGSFLFILIQLVLLIDFAHSWNQRWLGKAEECDSRAWYAGLFFFTLLFYLLSIAAVALMFMYYTEPSGCHEGKVFISLNLTFCVCVSIAAVLPKVQDAQPNSGLLQASVITLYTMFVTWSALSSIPEQKCNPHLPTQLGNETVVAGPEGYETQWWDAPSIVGLIIFLLCTLFISLRSSDHRQVNSLMQTEECPPMLDATQQQQQVAACEGRAFDNEQDGVTYSYSFFHFCLVLASLHVMMTLTNWYKP---GETRKMISTWTAVWVKICASWAGLLLYLWTLVAPLLLRNRDFS 455 The following BLAST results are available for this feature:
BLAST of TCONS_00056881 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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