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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056853 ID=TCONS_00056853|Name=TCONS_00056853|organism=Clytia hemisphaerica|type=transcript|length=1953bpRun BLAST on NCBI protein sequence of TCONS_00056853-protein >TCONS_00056853-protein ID=TCONS_00056853-protein|Name=TCONS_00056853-protein|organism=Clytia hemisphaerica|type=polypeptide|length=521bp MSRSKTTLASRIIREHFGDIVEKISSYLLQSGRKSLREICKDLTLSREEIRun BLAST on NCBI transcript from alignment at scaffold_284:252390..278819+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056853 ID=TCONS_00056853|Name=TCONS_00056853|organism=Clytia hemisphaerica|type=transcript|length=26430bp|location=Sequence derived from alignment at scaffold_284:252390..278819+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_284:252390..278819+ >TCONS_00056853 ID=TCONS_00056853|Name=TCONS_00056853|organism=Clytia hemisphaerica|type=CDS|length=23490bp|location=Sequence derived from alignment at scaffold_284:252390..278819+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056853 vs. Swiss-Prot (Human)
Match: RPC3 (DNA-directed RNA polymerase III subunit RPC3 OS=Homo sapiens GN=POLR3C PE=1 SV=1) HSP 1 Score: 339.732 bits (870), Expect = 1.077e-107 Identity = 197/519 (37.96%), Postives = 319/519 (61.46%), Query Frame = 2
Query: 320 MSRSKTTLASRIIREHFGDIVEKISSYLLQSGRKSLREICKDLTLSREEIKKGLSILIQHHLVEYIEGRNGITEYNALLDNILRRRRFQKYVYCAKVKFGDVAELVVETFLLNGCDTLSRASKRVADRLENDDMETEQRTDIDFVVQKCKELIRGQYLTRVKKPSPPASXXX-----XXXXXXXXXXXXXFTIPH----GVGKKRKASSPQPHSSKKVKLDSQDGASSDEQSKDVQYEDDGIYWCLNTQKFDQYFLDQLIITATSERLDQSAGKIVSTMLKMTESDRNIMTPATKSVSIYDLCKKMPSVPKLDENEVHQYLSLLSDDKTGGFVTKTDEAAGGMYAVNMRKSVEIICQAACSTIVQERFGSKACRVFRLLLEKRHLEQKQIGELAMIPFKDVKELLYKLFEERMVKVQEITKTSDYAPSRTFYLFAVDLPQVVRLLMNRCFQAIGNMMIRRDSXXXXXXXXXXXXXXXXGILSALSGTTEDTEQVMRELEELITPTEKQQLEKLKINLAR 1849
M++++ L S +++EHFG+IVEKI +L+++G + LR I D S +++KK L +L+QH+LV Y + G+ EY A +LR R+ +Y+Y K + D EL+VE LLNG T+S K+VADRL + ME + D V L ++ R PS P ++ I E++ + +P G GK+R++S K K + ++D + DDGIYW N +F Q+F DQ I++A + R+DQ++ +IV TML+M+E + P T+ +S ++ + +P + + + QYL+LL+DD FV K+ ++ GGMY +N+ K++ + A ++VQERFGS+ R+FRL+L+K+H+EQKQ+ + AMIP K+ K++LYK+ E + +QEI KT D+APSRTFYL+ V++ R+L++RC+++I N++ RR E +ENKRLLEK++++E I++++ T + Q ++E+EE+IT E+QQLE LK N+ +
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSAVVKKVADRL-TETMEDGKTMDYAEVSNTFVRLADTHFVQRC--PSVPTTENSDPGPPPPAPTLVINEKDMYLVPKLSLIGKGKRRRSSDEDAAGEPKAK---RPKYTTDNKEP---IPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMSEITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLE-FVGKSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQKKHIEQKQVEDFAMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFETKENKRLLEKSQRVEAIIASMQATGAEEAQ-LQEIEEMITAPERQQLETLKRNVNK 508 The following BLAST results are available for this feature:
BLAST of TCONS_00056853 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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