TCONS_00056989 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056989
Unique NameTCONS_00056989
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length673

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056989 ID=TCONS_00056989|Name=TCONS_00056989|organism=Clytia hemisphaerica|type=transcript|length=673bp
CTCAAATTAAAATCCCTGATTCTCGTCTGCAATGGAATGAGAAGCTCAAA
CCACTCCACTATCTTTTTGGTGACGCTGAAGTTACGGAAAGTGCAAATGA
CGACGTATTCAAGGAGTTCCGCAACGACTTCAGAGCCAATCGTCTAGCAC
GTTTTCAAAAAACCAACGCTGTTGCTACAAAGGTAACAGACGAACGTGGA
TGGTACGCATCCTCTTTATTTTGTAAAGTCTGTAATTCTGAAAATGATCC
GACCGCGTCAGAATGCACGACATGTGGTGGTGGCattgaagaaagaaaat
attcatTGGACTACACCAACATCCATGACATCATTAACGTCCTCAAAAAC
AAGAAGCCATCAGATATGAGCGTTAATGATGAAGCTGATAGTATAGAATC
GAGCAACAATATCGACGACTTCCCTGACAAATTCACCGACGAAGAGATGG
AGATGGTAGACATTGATATGGAGGTTACTCGTGGTGATGTCTTTcaggaa
attggaaaaaatgctAAGGCAATATTTTGCGACAGTGACATTCCCAAACA
AGATGGTTTGGACAGCAGCATCTTTGAGAACTGCACTATCAATCAAAGAG
TTCAAGAGCCATGTGAAATGTTTTGTGGAGAACCTGATTTGATGAACCCC
AATTCCTACGACCACTTGACCCG
Run BLAST on NCBI

protein sequence of TCONS_00056989-protein

>TCONS_00056989-protein ID=TCONS_00056989-protein|Name=TCONS_00056989-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
QIKIPDSRLQWNEKLKPLHYLFGDAEVTESANDDVFKEFRNDFRANRLAR
FQKTNAVATKVTDERGWYASSLFCKVCNSENDPTASECTTCGGGIEERKY
SLDYTNIHDIINVLKNKKPSDMSVNDEADSIESSNNIDDFPDKFTDEEME
MVDIDMEVTRGDVFQEIGKNAKAIFCDSDIPKQDGLDSSIFENCTINQRV
QEPCEMFCGEPDLMNPNSYDHLT
Run BLAST on NCBI

transcript from alignment at scaffold_284:8439..9111

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056989 ID=TCONS_00056989|Name=TCONS_00056989|organism=Clytia hemisphaerica|type=transcript|length=673bp|location=Sequence derived from alignment at scaffold_284:8439..9111 (Clytia hemisphaerica)
CGGGTCAAGTGGTCGTAGGAATTGGGGTTCATCAAATCAGGTTCTCCACA
AAACATTTCACATGGCTCTTGAACTCTTTGATTGATAGTGCAGTTCTCAA
AGATGCTGCTGTCCAAACCATCTTGTTTGGGAATGTCACTGTCGCAAAAT
ATTGCCTTagcattttttccaatttcctgAAAGACATCACCACGAGTAAC
CTCCATATCAATGTCTACCATCTCCATCTCTTCGTCGGTGAATTTGTCAG
GGAAGTCGTCGATATTGTTGCTCGATTCTATACTATCAGCTTCATCATTA
ACGCTCATATCTGATGGCTTCTTGTTTTTGAGGACGTTAATGATGTCATG
GATGTTGGTGTAGTCCAatgaatattttctttcttcaatGCCACCACCAC
ATGTCGTGCATTCTGACGCGGTCGGATCATTTTCAGAATTACAGACTTTA
CAAAATAAAGAGGATGCGTACCATCCACGTTCGTCTGTTACCTTTGTAGC
AACAGCGTTGGTTTTTTGAAAACGTGCTAGACGATTGGCTCTGAAGTCGT
TGCGGAACTCCTTGAATACGTCGTCATTTGCACTTTCCGTAACTTCAGCG
TCACCAAAAAGATAGTGGAGTGGTTTGAGCTTCTCATTCCATTGCAGACG
AGAATCAGGGATTTTAATTTGAG

Coding sequence (CDS) from alignment at scaffold_284:8439..9111

>TCONS_00056989 ID=TCONS_00056989|Name=TCONS_00056989|organism=Clytia hemisphaerica|type=CDS|length=669bp|location=Sequence derived from alignment at scaffold_284:8439..9111 (Clytia hemisphaerica)
GGTCAAGTGGTCGTAGGAATTGGGGTTCATCAAATCAGGTTCTCCACAAA
ACATTTCACATGGCTCTTGAACTCTTTGATTGATAGTGCAGTTCTCAAAG
ATGCTGCTGTCCAAACCATCTTGTTTGGGAATGTCACTGTCGCAAAATAT
TGCCTTagcattttttccaatttcctgAAAGACATCACCACGAGTAACCT
CCATATCAATGTCTACCATCTCCATCTCTTCGTCGGTGAATTTGTCAGGG
AAGTCGTCGATATTGTTGCTCGATTCTATACTATCAGCTTCATCATTAAC
GCTCATATCTGATGGCTTCTTGTTTTTGAGGACGTTAATGATGTCATGGA
TGTTGGTGTAGTCCAatgaatattttctttcttcaatGCCACCACCACAT
GTCGTGCATTCTGACGCGGTCGGATCATTTTCAGAATTACAGACTTTACA
AAATAAAGAGGATGCGTACCATCCACGTTCGTCTGTTACCTTTGTAGCAA
CAGCGTTGGTTTTTTGAAAACGTGCTAGACGATTGGCTCTGAAGTCGTTG
CGGAACTCCTTGAATACGTCGTCATTTGCACTTTCCGTAACTTCAGCGTC
ACCAAAAAGATAGTGGAGTGGTTTGAGCTTCTCATTCCATTGCAGACGAG
AATCAGGGATTTTAATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035886XLOC_035886Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056989-proteinTCONS_00056989-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056989-exon-scaffold_284-1491911889:8439..9111TCONS_00056989-exon-scaffold_284-1491911889:8439..9111Clytia hemisphaericaexon
TCONS_00056989-exon-scaffold_284-1510915933:8439..9111TCONS_00056989-exon-scaffold_284-1510915933:8439..9111Clytia hemisphaericaexon
TCONS_00056989-exon-scaffold_284-1575043694:8439..9111TCONS_00056989-exon-scaffold_284-1575043694:8439..9111Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:8439..9111 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.400086	0.372806	0.0865727	0.0846978	0.206223	0.24444	1.08132	0.552176	0.902047	0.399047	0.15493	0.152767	0.406813	0.264049	0.0868338	0	0	0.0588318	0.162559	0.085053	0	0	0	0.159406	0.0820924	0.146531	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056989 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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