TCONS_00056803 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056803
Unique NameTCONS_00056803
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length212

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056803 ID=TCONS_00056803|Name=TCONS_00056803|organism=Clytia hemisphaerica|type=transcript|length=212bp
CAGTCATAGAAAAGTTCAGATGGCTTGTAACATCAATGATGAAGTGATCT
GAGAGAGCAGTTGGTGTGCATAGGTAGTTGAAGATTGAATCGGAGTTATT
TTAGTCAGTACANATTCCCTTTCTTGTAAACTGGGGATATATGTccagtt
tttaaaagttttggagtGATTCCTTTGTTAAGTATGTTTCTCCAGATGAT
TGAAAGTGGTAG
Run BLAST on NCBI

transcript from alignment at scaffold_282:336270..336481

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056803 ID=TCONS_00056803|Name=TCONS_00056803|organism=Clytia hemisphaerica|type=transcript|length=212bp|location=Sequence derived from alignment at scaffold_282:336270..336481 (Clytia hemisphaerica)
CTACCACTTTCAATCATCTGGAGAAACATACTTAACAAAGGAATCactcc
aaaacttttaaaaactggACATATATCCCCAGTTTACAAGAAAGGGAATN
TGTACTGACTAAAATAACTCCGATTCAATCTTCAACTACCTATGCACACC
AACTGCTCTCTCAGATCACTTCATCATTGATGTTACAAGCCATCTGAACT
TTTCTATGACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035783XLOC_035783Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056803-exon-scaffold_282-1491911889:336270..336481TCONS_00056803-exon-scaffold_282-1491911889:336270..336481Clytia hemisphaericaexon
TCONS_00056803-exon-scaffold_282-1510915933:336270..336481TCONS_00056803-exon-scaffold_282-1510915933:336270..336481Clytia hemisphaericaexon
TCONS_00056803-exon-scaffold_282-1575043694:336270..336481TCONS_00056803-exon-scaffold_282-1575043694:336270..336481Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_282supercontigscaffold_282:336270..336481 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.27946	2.76453	0	0.633077	3.11887	4.91863	5.31155	3.49974	1.80581	2.40815	17.0162	5.71629	1.15262	0	1.25637	2.77933	3.14948	0.380692	0	2.96767	1.92765	0	0.820797	1.47862	0	11.0124	0.172091	0	0	2.63156
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056803 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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