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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056768 ID=TCONS_00056768|Name=TCONS_00056768|organism=Clytia hemisphaerica|type=transcript|length=2090bpRun BLAST on NCBI protein sequence of TCONS_00056768-protein >TCONS_00056768-protein ID=TCONS_00056768-protein|Name=TCONS_00056768-protein|organism=Clytia hemisphaerica|type=polypeptide|length=315bp MVEIVTSAPGKIILCGEHAVVYGKEALAFSLSTTTQCCLKENMNNPSQIRRun BLAST on NCBI transcript from alignment at scaffold_282:165851..189663- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056768 ID=TCONS_00056768|Name=TCONS_00056768|organism=Clytia hemisphaerica|type=transcript|length=23813bp|location=Sequence derived from alignment at scaffold_282:165851..189663- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_282:165851..189663- >TCONS_00056768 ID=TCONS_00056768|Name=TCONS_00056768|organism=Clytia hemisphaerica|type=CDS|length=8532bp|location=Sequence derived from alignment at scaffold_282:165851..189663- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056768 vs. Swiss-Prot (Human)
Match: KIME (Mevalonate kinase OS=Homo sapiens GN=MVK PE=1 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 1.472e-41 Identity = 105/329 (31.91%), Postives = 178/329 (54.10%), Query Frame = 3
Query: 81 IVTSAPGKIILCGEHAVVYGKEALAFSLSTTTQCCLKENMNNPSQIRIKVPDLQIDETYNGEDLEKAYGDSLQKGSGDVQTCQLFENEEDIYERLLSPEIDGTKKAALKLILVLYMHLAHSQTTPRKIGLCISFKSDLPIGAGLGXXXXXXXXXXXXMLVYTGVLPSNQSD------WTEKDYEVINGWAYQSERIVHGTPSGIDNSISTYGQCVSFKSKKIERLKNFSELNLKVVLINTKKSRSTKALVTGVRQRNDKYPKIYPHIMDTIEQVTEKFKHNLMELSSDNAKERDEIYQNI--------------EEETESSCKATRQRG 1007
++ SAPGK+IL GEHAVV+GK ALA SL+ T L+ + N ++ + +P++ I ++ L+ L++G T + E +++ L + T++ A+ L LY+ + Q + + + S+LP GAGLGSSA+++V +A+L +P+ D WT++D E+IN WA+Q ER++HG PSG+DN++ST+G + + KI LK L+++L NTK R+T+ALV GVR R K+P+I ++ +I+ ++ + + L E+ A E+ + + + + C+ TR RG
Sbjct: 6 LLVSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNG--KVDLSLPNIGIKRAWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAG--LPDDCAVTERLAVLAFLYLYLSICRKQRALPSLDIVV--WSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKEDLELINKWAFQGERMIHGNPSGVDNAVSTWGGALRYHQGKISSLKRSPA--LQILLTNTKVPRNTRALVAGVRNRLLKFPEIVAPLLTSIDAISLECERVLGEMGEAPAPEQYLVLEELIDMNQHHLNALGVGHASLDQLCQVTRARG 326 The following BLAST results are available for this feature:
BLAST of TCONS_00056768 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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