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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056764 ID=TCONS_00056764|Name=TCONS_00056764|organism=Clytia hemisphaerica|type=transcript|length=2049bp
ggtttcttgaatttcttgagtttgtattattctgcattttaatactattg
ttgtcatttttcaattgtcttattacattaatcttcaggtaggtccattc
agcatgtagatTGTTTTATCTTATGacattcaattttgttttaaagaatA
ATCTCAAAGACAATAGGTTAATATTAGCATGTGTGGTTTTTATTTGttcc
cgttttttttttttttaactcaagaAATGAGCTagcaaaaaatatgtttc
aagGCCAAAGGAGTAATGGAAGAGGAAGGGACCAAACAAGGGGTAGAGAG
AGAAGTAGGGGAAAGGGCCGAGGTCATGTTGGTAGAGTTTCAAGCAGGCA
GCAAGGTTCAGATGTTGGTAGAGGATCAAACACTAAGGAGAGTATGAAGC
CAGCTGCTCAAAGAAGAAACAGTAAACCCTCTGTGAAAAGCAGACAGAAG
GAAAGCCATACCAAAGAAGATCATCAACAGAATCAAAGTTGTGAGTCTAA
ACAATCAAACAAGTTTCggtcaagaaaacaaaaagagtCACAGCCTGaTT
GCATTTTGTCTAACAGTTTTGGATGTGAAAACATCAATTGGTCAAGCAAA
GAACtgatcaaattctgtgaaaagaATTTTGTTATGTTTATCATGCGTGG
AGTTCCTGGTTCAGGAAAAAGTACATTGGCTCAAAAAGTGAAATCATTTT
ATGGTGGAAGAGATGCTATCATTTGCTCAGCCGATGATTATAGGTACAAT
AGAAAAGGCGAATACATATTTAGTGTGGATCAACTTTACAAAACACATTT
ACAATGCCAAAACAAAGCTGAAACCTACTGTAGCAAACAGATTCATGTGA
TCATTATAGaTAACACAAACATACATTCAAAGGACTGCAATCCTTATTTA
ACCCTGGCAAAGAAATacaattattttgttattttcttaaaaatgaaagc
TCAAGGTGTTGATCATCATGTTCAGTATAACACACATCAAGTTCCACGTG
ACACTATTGCCAAAATGATACTAAGTTATGGATCTAATCCGTTACCCTAC
TATTTCAACTGGGCTGTTCCTAATTCTGAGGGAGTGCGCCTGAGAAATGT
TACACAAAGACTAATTCAGAGTTGTATGAAAGCAGATAGCCATTTTAGTA
ACTTTTTaacaaatgaaatgaaaacttCATCACAGAATCTTTTCAAGACA
TTTCATTTACAAAATGCCTCAAGTCATCATTACCATGCTACAGTTGCTTA
TACCAACCAGTATAATGTACCAACTAAAATCAGTGATAAATATACAAAGT
CTGCTACAGTGAAAAATGCTCTTGGTAGCGTCACCTTCCTTCAAATAGCT
GGTGTATACATCACACCAAAGTGTATAGCCGCTAGGTTGCTATTGACTGA
AGAACAGAAGAAACTATGGGGTAGAAATGATTCTTTAAACCGTGGTGAAA
TCAACCCTATCGCTTTTGAATCAAATAAAGTTATGGAGGGCTCTTTAGAG
AAAATGCTTTGTGACTTACATCTTAATAACAAACACATGAATGAGGATAC
AGTAACTTTTCAAGTACCTCCTGGATGTACAGAACCTAGTCATAGTCTTG
GTTGCACAGCTCACATTACTTTAGGGACGAGGGGTAACAACAAACCTGTG
ATTGCAAAAGATACCTTATACCAGATTGTTCATTTAGAAGCATACACTCT
accaaaaagtgaaacattAACCTCAGGGAATCTTGTAATTCGTTGCTATG
GGGATGATAAATGGGTTATCTATTTTCGACATCCGTTTATAGCGCAAGCA
TTGTTTTGTGGACACTatgatttgatgaaaaatacagggtgtcccaaaaa
gtagttttttttaggttttatccattcttttttactttttttgtacaGAA
AGTATGgttttaatatttatatttggaattatttttgtAGATAGCTGAAA
TTGAACATTATTTGGTTTTATCTTTTaactaacttttttattcatttgtt
tgTTAGTAAAGCCCTTAACATTTtaatattaataaaaacactaaaGCAT Run BLAST on NCBI transcript from alignment at scaffold_282:96929..100390- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056764 ID=TCONS_00056764|Name=TCONS_00056764|organism=Clytia hemisphaerica|type=transcript|length=3462bp|location=Sequence derived from alignment at scaffold_282:96929..100390- (Clytia hemisphaerica)
GGTTTCTTGAATTTCTTGAGTTTGTATTATTCTGCATTTTAATACTATTG
TTGTCATTTTTCAATTGTCTTATTACATTAATCTTCAGGTAGGTCCATTC
AGCATGTAGATTGTTTTATCTTATGACATTCAATTTTGTTTTAAAGAATA
ATCTCAAAGACAATAGGTTAATATTAGCATGTGTGGTTTTTATTTGTTCC
CGTTTTTTTTTTTTTTAACTCAAGAAATGAGCTAGCAAAAAATATGTTTC
AAGGCCAAAGGAGTAATGGAAGAGGAAGGGACCAAACAAGGGGTAGAGAG
AGAAGTAGGGGAAAGGGCCGAGGTCATGTTGGTAGAGTTTCAAGCAGGCA
GCAAGGTTCAGATGTTGGTAGAGGATCAAACACTAAGGAGAGTATGAAGC
CAGCTGCTCAAAGAAGAAACAGTAAACCCTCTGTGAAAAGCAGACAGAAG
GAAAGCCATACCAAAGAAGATCATCAACAGAATCAAAGTTGTGAGTCTAA
ACAATCAAACAAGTTTCGGTCAAGAAAACAAAAAGAGTCACAGCCTGGTA
AGGCCTGTAAATTCGTATAATTTAACATAATAAGGACGCCTTTGTTTTTT
TAATGGTCCTGTCATAATAGTTGCATTTCCAAGATATTTTTATTTTATAC
AATAATATAATTTCCTTGATTACATTGTATTGCCTAGAGATTGAGTAAGT
TTGGAAAAAGTGTCATAATTATAAATTAAATCTCAATCTTTCAATTTTCT
TTTAGAAAAGACTACTGGGTCAATTGCTATGAAAAAAGATTATCATAAAT
CTGGATCAGTTGCTGGCCAGTCTTCAGGAAAAGCAGGTTATTTATGTTTA
AAATCAAATCCAAAAAAAGAGATTCTGACTTGTCATATATTTCCTTAAAA
TGAGAAATTGTTTTTGTAAATGCCTTCAAAATTTTCTTCTTTCTAGATTG
CATTTTGTCTAACAGTTTTGGATGTGAAAACATCAATTGGTCAAGCAAAG
AACTGATCAAATTCTGTGAAAAGAATTTTGTTATGTTTATCATGCGTGGA
GTTCCTGGTTCAGGAAAAAGTACATTGGCTCAAAAAGTGAAATCATTTTA
TGGTGGAAGAGATGCTATCATTTGCTCAGCCGATGATTATAGGTAAGACA
CCGTAAGGTTGTATGGGATCAGGTGACTTCAATGCCTACTTTAATCTGCA
ATTATAGCATTTTTATTTCCCATTGAGCATTTGAGTTAATTTAGAATGAA
AGTAGAGAATTTATAAAACTCAGTATCAAACTACAAAACTAAAAATTTGT
AAGATGTGGGAAAATATTTTTGAAAATAAAATTGAAATTAAATAATTTAG
TCTTAGAACACGATTGCCGTTGAAAAAAGAAATGTTTTATACCAAAGTCA
AGGTTATATCCAGTCTTTTGGAAACGTTTTAGGCGCTGTTCACTGTTTCT
TGTTGATGTGTCACTGCACAATGTTGAACTTATTTTTATATTAAGGAGTT
GAGAATATAGGTTTCGCACTTTCCTTTTACAGGTACAATAGAAAAGGCGA
ATACATATTTAGTGTGGATCAACTTTACAAAACACATTTACAATGCCAAA
ACAAAGCTGAAACCTACTGTAGCAAACAGATTCATGTGATCATTATAGGT
AAGTTATTAATAGTGGCTGCAAAGTTTGGTACTATATATTGACGATGTGA
CTTGTTGATATACTTGATCTTTTCAGTTACCGATATTTTGAAAAGCAATA
GCAAGTGTAAGTAACTGAAAATTAGTTGTCTTTGCTTTTTCACTTGTTAC
TCTTTATTAATTTATGATTATATACCTTATTGGAACTAATTTTCGCGGGA
ACTAATTTTTGCGGTCAAAAAAAAATATCCGGAAAATTGCATTTCGCGGG
TTTTAATTTTCGTGGTTTTTTCCATTCTGGAATTTTCGCGGGTTTTAGTT
TTCGCGGTTTTGCCCTTTTTTGGACAAATTTCTTTCATTTTCCTAGGGAT
TTTTCAAATTTTTCGATAAAATTGGAAAAAATTGTTATTCGCGGGAATTA
ATTTTCGCGGGTTTTAGTTTTCGCGGTTTTGCCCTTTTTTGGACAAATTT
CTTTCATTTTCCTAGGGATTTTTCAAATTTTTCGATAAAATTGGAAAAAA
TTGTTATTCGCGGGAATTAATTTTCGCGGTTTTCAGCTCTCAAAATTTTT
CGCTAAAATTAAAACCCGCGAAAATTAGTTCCAATAAGGTATCAAAATGC
GTCTCTCATTCTTCTTTTTCAGATAACACAAACATACATTCAAAGGACTG
CAATCCTTATTTAACCCTGGCAAAGAAATACAATTATTTTGTTATTTTCT
TAAAAATGAAAGCTCAAGGTGTTGATCATCATGTTCAGTATAACACACAT
CAAGTTCCACGTGACACTATTGCCAAAATGATACTAAGTTATGGATCTAA
TCCGTTACCCTACTATTTCAACTGGGCTGTTCCTAATTCTGAGGGAGTGC
GCCTGAGAAATGTTACACAAAGACTAATTCAGAGTTGTATGAAAGCAGAT
AGCCATTTTAGTAACTTTTTAACAAATGAAATGAAAACTTCATCACAGAA
TCTTTTCAAGACATTTCATTTACAAAATGCCTCAAGTCATCATTACCATG
CTACAGTTGCTTATACCAACCAGTATAATGTACCAACTAAAATCAGTGAT
AAATATACAAAGTCTGCTACAGTGAAAAATGCTCTTGGTAGCGTCACCTT
CCTTCAAATAGCTGGTGTATACATCACACCAAAGTGTATAGCCGCTAGGT
TGCTATTGACTGAAGAACAGAAGAAACTATGGGGTAGAAATGATTCTTTA
AACCGTGGTGAAATCAACCCTATCGCTTTTGAATCAAATAAAGTTATGGA
GGGCTCTTTAGAGAAAATGCTTTGTGACTTACATCTTAATAACAAACACA
TGAATGAGGATACAGTAACTTTTCAAGTACCTCCTGGATGTACAGAACCT
AGTCATAGTCTTGGTTGCACAGCTCACATTACTTTAGGGACGAGGGGTAA
CAACAAACCTGTGATTGCAAAAGATACCTTATACCAGATTGTTCATTTAG
AAGCATACACTCTACCAAAAAGTGAAACATTAACCTCAGGGAATCTTGTA
ATTCGTTGCTATGGGGATGATAAATGGGTTATCTATTTTCGACATCCGTT
TATAGCGCAAGCATTGTTTTGTGGACACTATGATTTGATGAAAAATACAG
GGTGTCCCAAAAAGTAGTTTTTTTTAGGTTTTATCCATTCTTTTTTACTT
TTTTTGTACAGAAAGTATGGTTTTAATATTTATATTTGGAATTATTTTTG
TAGATAGCTGAAATTGAACATTATTTGGTTTTATCTTTTAACTAACTTTT
TTATTCATTTGTTTGTTAGTAAAGCCCTTAACATTTTAATATTAATAAAA
ACACTAAAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056764-exon-scaffold_282-1575043694:99844..100390 | TCONS_00056764-exon-scaffold_282-1575043694:99844..100390 | Clytia hemisphaerica | exon |
| TCONS_00056764-exon-scaffold_282-1575043694:99249..99444 | TCONS_00056764-exon-scaffold_282-1575043694:99249..99444 | Clytia hemisphaerica | exon |
| TCONS_00056764-exon-scaffold_282-1575043694:98743..98858 | TCONS_00056764-exon-scaffold_282-1575043694:98743..98858 | Clytia hemisphaerica | exon |
| TCONS_00056764-exon-scaffold_282-1575043694:96929..98118 | TCONS_00056764-exon-scaffold_282-1575043694:96929..98118 | Clytia hemisphaerica | exon |
| TCONS_00056764-exon-scaffold_282-1510915933:99844..100390 | TCONS_00056764-exon-scaffold_282-1510915933:99844..100390 | Clytia hemisphaerica | exon |
| TCONS_00056764-exon-scaffold_282-1510915933:99249..99444 | TCONS_00056764-exon-scaffold_282-1510915933:99249..99444 | Clytia hemisphaerica | exon |
| TCONS_00056764-exon-scaffold_282-1510915933:98743..98858 | TCONS_00056764-exon-scaffold_282-1510915933:98743..98858 | Clytia hemisphaerica | exon |
| TCONS_00056764-exon-scaffold_282-1510915933:96929..98118 | TCONS_00056764-exon-scaffold_282-1510915933:96929..98118 | Clytia hemisphaerica | exon |
| TCONS_00056764-exon-scaffold_282-1491911889:99844..100390 | TCONS_00056764-exon-scaffold_282-1491911889:99844..100390 | Clytia hemisphaerica | exon |
| TCONS_00056764-exon-scaffold_282-1491911889:99249..99444 | TCONS_00056764-exon-scaffold_282-1491911889:99249..99444 | Clytia hemisphaerica | exon |
| TCONS_00056764-exon-scaffold_282-1491911889:98743..98858 | TCONS_00056764-exon-scaffold_282-1491911889:98743..98858 | Clytia hemisphaerica | exon |
| TCONS_00056764-exon-scaffold_282-1491911889:96929..98118 | TCONS_00056764-exon-scaffold_282-1491911889:96929..98118 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_282 | supercontig | scaffold_282:96929..100390 - |
Blast
BLAST of TCONS_00056764 vs. Swiss-Prot (Human)
Match: CN37 (2',3'-cyclic-nucleotide 3'-phosphodiesterase OS=Homo sapiens GN=CNP PE=1 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 3.848e-19 Identity = 96/408 (23.53%), Postives = 163/408 (39.95%), Query Frame = 1
Query: 634 MFIMRGVPGSGKSTLAQKVKSFYGGRDAI-ICSADDYRYNRKGEYIFSVDQLYKTHLQCQNKAETYCSKQ-IHVIIIDNTNIHSKDCNPYLTLAKKYNYFVIFLKMK-AQGVD--HHVQYNTHQVPRDTIAKMILSYGSNPLPYYFNWAVPNSEGVRLRNVTQRLIQSCM--KA-DSHFSNFLTNEMKTSSQNLFKTFHLQNASSHHYHATVAYTNQYNVPTKISDKYTKSATVKNALGSVTFLQIAGVYITPKCIAARLLLTEEQKKLWGRN-DSLNRGEINPIAFESNKVMEGSLEKMLCDLHLNNKHMNEDTVTFQVPPGCTEPSHSL--GCTAHITLGTRGNNKPVIAKDTLYQIVHLEAYTLPKSET--LTSGNLVIRCYGDDKWVIYFRHPFIAQALFCGHY 1818
+FI+RG+PGSGKSTLA+ + Y RD + SAD Y+ FS + YK + YC ++ I ++++D+TN + +A +Y Y V+ ++ K A +D + N Q+ D + K+ + LP YF W + LR Q ++ KA F+ + +L F + H T + + P +++Y + +K + L I+ +++TPK AR+ L+E+Q +LW + D L+ P+ +L G AHITLG + + V L +I+ E E L+ G L G+ +W++ +A+F G+Y
Sbjct: 52 LFILRGLPGSGKSTLARVIVDKY--RDGTKMVSADAYKITPGARGAFSEE--YK---RLDEDLAAYCRRRDIRILVLDDTNHERERLEQLFEMADQYQYQVVLVEPKTAWRLDCAQLKEKNQWQLSADDLKKLKPGLEKDFLPLYFGWFLTKKSSETLRKAGQVFLEELGNHKAFKKELRQFVPGDEPREKMDLVTYFGKRPPGV--LHCTTKFCDYGKAPG--AEEYAQQDVLKKSYSKAFTLTISALFVTPKTTGARVELSEQQLQLWPSDVDKLS------------------------------------------------PTDNLPRGSRAHITLGCAADVEAVQTGLDLLEILRQEKGGSRGEEVGELSRGKLY--SLGNGRWMLTLAKNMEVRAIFTGYY 398
The following BLAST results are available for this feature:
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