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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056514 ID=TCONS_00056514|Name=TCONS_00056514|organism=Clytia hemisphaerica|type=transcript|length=2305bpRun BLAST on NCBI protein sequence of TCONS_00056514-protein >TCONS_00056514-protein ID=TCONS_00056514-protein|Name=TCONS_00056514-protein|organism=Clytia hemisphaerica|type=polypeptide|length=758bp METPELQLQEIECAGNDENTSHQIHSKHVRIKPSISNSFQANTASNKVKVRun BLAST on NCBI transcript from alignment at scaffold_276:524868..535671- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056514 ID=TCONS_00056514|Name=TCONS_00056514|organism=Clytia hemisphaerica|type=transcript|length=10804bp|location=Sequence derived from alignment at scaffold_276:524868..535671- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_276:524868..535671- >TCONS_00056514 ID=TCONS_00056514|Name=TCONS_00056514|organism=Clytia hemisphaerica|type=CDS|length=31836bp|location=Sequence derived from alignment at scaffold_276:524868..535671- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056514 vs. Swiss-Prot (Human)
Match: EDC4 (Enhancer of mRNA-decapping protein 4 OS=Homo sapiens GN=EDC4 PE=1 SV=1) HSP 1 Score: 280.026 bits (715), Expect = 1.832e-79 Identity = 179/507 (35.31%), Postives = 268/507 (52.86%), Query Frame = 1
Query: 19 RTTIMETPELQLQE---IECAGNDENTSHQIHSKHVRIKPSISNSFQANT-ASNKVKVSQISKLGWKEKFYLGNLVSCNETFFAYIIQARTKEEADSVRVMNQHTSSRTLIKGFNKRVVDISFESFRSNRLACVDSTGTLHVYEISDGGASSVEYPFQFKSIIKISRKEELSDVS--SRVVWAPNLLLPVEAGQDTM-----LALSTGKGAVIFNLEIILKNHGE-DVYLEDIKDGVIILKGCHKETITCLALSPDKRVLATSSVDGEVKFWGFSFEEPNSEDEEPNCLHEWEPHDGKPVTSLFFCDDLLIADDSSPFWRYLITGTDYNTTLKVWCAVKWECLQTIEFS-QASAEVEKPSKFKVALDITAKYLLLADIYNPVVYVCQLHKDDEPSSSFIFYVSEFLLKEPLLSFSIHVAKERKEKSRSVTSXXXXXXXXXXXXXXXXXXXSLEQNEFSSDHEDNDDAKERLS--IVTLFSTNRASLQKLSIKFKCAPFPGVTAPTNT 1494
+T + P + LQE I +G+D +T I +K V I S +S + SNKVK+ ++K W++K+Y GNL++ + +F AY I+A A VRV++ TS RTL+KGF V D++F S +LAC+D G L V+ ++ V Q + ++ I R+ E + ++ R++W P +P E+ +AL A +++L+++ +H V + IK G I++KG H ++ ALSPD VLAT+S DG VKFW E +EP CLHEW+PHDG+P++ L FCD+ D PFWR+LITG D N LK+WC V W CLQTI FS + V P KV LD++A+YL+L+D+ V+YV +L ++ E + +SEFLL P+LSF I V + + V E E + +D A E + ++ LF + +LQ + I+F+ P V AP T
Sbjct: 63 KTGLRTMPPINLQEKQVICLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVKIQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSA-MVRVISVSTSERTLLKGFTGSVADLAFAHLNSPQLACLDEAGNLFVWRLA-----LVNGKIQEEILVHI-RQPEGTPLNHFRRIIWCP--FIPEESEDCCEESSPTVALLHEDRAEVWDLDMLRSSHSTWPVDVSQIKQGFIVVKG-HSTCLSEGALSPDGTVLATASHDGYVKFWQIYIEG----QDEPRCLHEWKPHDGRPLSCLLFCDNHKKQDPDVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAEYLILSDVQRKVLYVMELLQNQEEGHACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLPAEE------------------ENDSLGADGTHGAGAMESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPT 537 The following BLAST results are available for this feature:
BLAST of TCONS_00056514 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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