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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056377 ID=TCONS_00056377|Name=TCONS_00056377|organism=Clytia hemisphaerica|type=transcript|length=746bp
GGATGATATTTCCTTGAAGATGTCAAAGCTGAAGCTGGACTCATTGGCGA
AAAAGATTATTCTTCAAGATATTTTTGGAAACTCATCATCTCAGGTTTTG
GGATTGGTTGATTGTGAGGATGCTGCTGATTTATTTCCACGGATGCCTGA
TACATATGCTAAATGGAACAAACTCACCAAAAGTGAAGAGTTTTCCAATT
ACTTCGAAACGTACATCCTTCAAAATTTTGCCCATGGATGTTTGGCTGGG
GTTAGAAGAAGCGCAGGCCttggtgaaaacttcttttATACCAATGCAAT
TGAATCTACCCACAAGAAATTCAAGACATACATTAAGCAAGATAAGATGG
ACAACCAGATTTCTGGAATGATTAATCCAAAATCTTCTTGGACTGAAGCT
GCTTTAAAATATGTTGAAATGATTGCTGTTCATCATAGGAATTTGgatag
cctgggtatccagactcaaaattttagaaaaaaacactcttacctcaaca
tacaaagtttctaaaattatagagtctggtgcaactaaaaaagtctgaNT
GCTGTTCATCATAGGAATTTGGAGCGTGCTTTGATGGACCAAGGGATATA
TGAACTTGCTCCAGATTTCCAGCATCTTTTAATCGACAAGGATAAAATGG
CTAACATGACAGATGAGCAGATCAACACGAAAAAGGCACAATTCTGTGGA
AAGTTTCCAGTCATGTACAAGAAGTCTTCTGGAAAGGAAACTGGTA Run BLAST on NCBI protein sequence of TCONS_00056377-protein >TCONS_00056377-protein ID=TCONS_00056377-protein|Name=TCONS_00056377-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
DDISLKMSKLKLDSLAKKIILQDIFGNSSSQVLGLVDCEDAADLFPRMPD
TYAKWNKLTKSEEFSNYFETYILQNFAHGCLAGVRRSAGLGENFFYTNAI
ESTHKKFKTYIKQDKMDNQISGMINPKSSWTEAALKYVEMIAVHHRNLDS
LGIQTQNFRKKHSYLNIQSF Run BLAST on NCBI transcript from alignment at scaffold_274:16..1635+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056377 ID=TCONS_00056377|Name=TCONS_00056377|organism=Clytia hemisphaerica|type=transcript|length=1620bp|location=Sequence derived from alignment at scaffold_274:16..1635+ (Clytia hemisphaerica)
GGATGATATTTCCTTGAAGATGTCAAAGCTGAAGCTGGACTCATTGGCGA
AAAAGATTATTCTTCAAGATATTTTTGGAAACTCATCATCTCAGGTAATG
AATGCGTTTCCTTAGTAAGTATCTATTATTAATTTTTGTGTGGactaaat
ttaaaatcaaatcagCCTGTTTTTCATCCAatttcattttacaattttaa
aaatttggcgTGGTGTGAACAGAGGCTGAGTCTAAATTAATCCACATGAA
AATTAAATCACAATACCAATAAAGATACCAAATGTTTGGGTCTattgttt
atcattttcaataaaaccattccttatttgtttttttaactaTATTTTTG
TAGAGGGGTTAAAACCCTAAAGTCAGAGTTTGAATTCCCATAAAGCTATG
TATCACTAAATAACGTTTTCAGGCTCAGATTTAAATATGTGTATCTGCTT
TGCAATTAGGGAATAAGTTAATGCGAATTTGGCCCTTTAtagcaaaatta
aatttcacaaaacttgaaatttcaaccATTTGCACTAATTAATTCCGCGA
ACCTTGAAATTTTGGACCATTAATTAATAACACATTCATTAATTCCACAA
AACATAAATAAAGCTATTGCATTAACTTATTCCGCATTAAATTTAAATAT
TCCCAACCAATCAGTTAGGTCTTCAGGAGAAATTGCAGTGATGTATATTA
TGAAGTGAACACAAAGTGATTAAATTCTTCTTTCATTCAGGTTTTGGGAT
TGGTTGATTGTGAGGATGCTGCTGATTTATTTCCACGGATGCCTGATACA
TATGCTAAATGGAACAAACTCACCAAAAGTGAAGAGTTTTCCAATTACTT
CGAAACGTACATCCTTCAAAATTTTGCCCATGGATGTTTGGCTGGGGTTA
GAAGAAGCGCAGGCCttggtgaaaacttcttttATACCAATGCAATTGAA
TCTACCCACAAGAAATTCAAGACATACATTAAGCAAGATAAGATGGACAA
CCAGATTTCTGGAATGATTAATCCAAAATCTTCTTGGACTGAAGCTGCTT
TAAAATATGTTGAAATGATTGCTGTTCATCATAGGAATTTGgatagcctg
ggtatccagactcaaaattttagaaaaaaacactcttacctcaacataca
aagtttctaaaattatagagtctggtgcaactaaaaaagtctgaNTGCTG
TTCATCATAGGAATTTGGAGCGTGCTTTGATGGACCAAGGTAACTGGATT
TGCATAACTATAAGCACTTGAAAGGGAGAGTGCCAGATTTTCAAAAGTAT
AAATTTTTAGGTCTAATTTTAGCCAAAAAACTGCTATTAAACTTTAAAAG
CCAGTTAAAATATTCGAAGATAGAGCAGGTTAGAGTTGGCTCCCTAGGGT
TCTGCACTTGAAGTGATCATCAGGTTAGTAGAAAGAAAATCTTATCCTAT
ATAAATACTCTTTTCAGGGATATATGAACTTGCTCCAGATTTCCAGCATC
TTTTAATCGACAAGGATAAAATGGCTAACATGACAGATGAGCAGATCAAC
ACGAAAAAGGCACAATTCTGTGGAAAGTTTCCAGTCATGTACAAGAAGTC
TTCTGGAAAGGAAACTGGTA Coding sequence (CDS) from alignment at scaffold_274:16..1635+ >TCONS_00056377 ID=TCONS_00056377|Name=TCONS_00056377|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_274:16..1635+ (Clytia hemisphaerica)
GATGATATTTCCTTGAAGATGTCAAAGCTGAAGCTGGACTCATTGGCGAA
AAAGATTATTCTTCAAGATATTTTTGGAAACTCATCATCTCAGGTTTTGG
GATTGGTTGATTGTGAGGATGCTGCTGATTTATTTCCACGGATGCCTGAT
ACATATGCTAAATGGAACAAACTCACCAAAAGTGAAGAGTTTTCCAATTA
CTTCGAAACGTACATCCTTCAAAATTTTGCCCATGGATGTTTGGCTGGGG
TTAGAAGAAGCGCAGGCCttggtgaaaacttcttttATACCAATGCAATT
GAATCTACCCACAAGAAATTCAAGACATACATTAAGCAAGATAAGATGGA
CAACCAGATTTCTGGAATGATTAATCCAAAATCTTCTTGGACTGAAGCTG
CTTTAAAATATGTTGAAATGATTGCTGTTCATCATAGGAATTTGgatagc
ctgggtatccagactcaaaattttagaaaaaaacactcttacctcaacat
acaaagtttctaaGATGATATTTCCTTGAAGATGTCAAAGCTGAAGCTGG
ACTCATTGGCGAAAAAGATTATTCTTCAAGATATTTTTGGAAACTCATCA
TCTCAGGTTTTGGGATTGGTTGATTGTGAGGATGCTGCTGATTTATTTCC
ACGGATGCCTGATACATATGCTAAATGGAACAAACTCACCAAAAGTGAAG
AGTTTTCCAATTACTTCGAAACGTACATCCTTCAAAATTTTGCCCATGGA
TGTTTGGCTGGGGTTAGAAGAAGCGCAGGCCttggtgaaaacttcttttA
TACCAATGCAATTGAATCTACCCACAAGAAATTCAAGACATACATTAAGC
AAGATAAGATGGACAACCAGATTTCTGGAATGATTAATCCAAAATCTTCT
TGGACTGAAGCTGCTTTAAAATATGTTGAAATGATTGCTGTTCATCATAG
GAATTTGgatagcctgggtatccagactcaaaattttagaaaaaaacact
cttacctcaacatacaaagtttctaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056377-exon-scaffold_274-1491911889:16..109 | TCONS_00056377-exon-scaffold_274-1491911889:16..109 | Clytia hemisphaerica | exon |
| TCONS_00056377-exon-scaffold_274-1510915933:16..109 | TCONS_00056377-exon-scaffold_274-1510915933:16..109 | Clytia hemisphaerica | exon |
| TCONS_00056377-exon-scaffold_274-1575043694:16..109 | TCONS_00056377-exon-scaffold_274-1575043694:16..109 | Clytia hemisphaerica | exon |
| TCONS_00056377-exon-scaffold_274-1491911889:756..1254 | TCONS_00056377-exon-scaffold_274-1491911889:756..1254 | Clytia hemisphaerica | exon |
| TCONS_00056377-exon-scaffold_274-1510915933:756..1254 | TCONS_00056377-exon-scaffold_274-1510915933:756..1254 | Clytia hemisphaerica | exon |
| TCONS_00056377-exon-scaffold_274-1575043694:756..1254 | TCONS_00056377-exon-scaffold_274-1575043694:756..1254 | Clytia hemisphaerica | exon |
| TCONS_00056377-exon-scaffold_274-1491911889:1483..1635 | TCONS_00056377-exon-scaffold_274-1491911889:1483..1635 | Clytia hemisphaerica | exon |
| TCONS_00056377-exon-scaffold_274-1510915933:1483..1635 | TCONS_00056377-exon-scaffold_274-1510915933:1483..1635 | Clytia hemisphaerica | exon |
| TCONS_00056377-exon-scaffold_274-1575043694:1483..1635 | TCONS_00056377-exon-scaffold_274-1575043694:1483..1635 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_274 | supercontig | scaffold_274:16..1635 + |
Blast
The following BLAST results are available for this feature:
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