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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056333 ID=TCONS_00056333|Name=TCONS_00056333|organism=Clytia hemisphaerica|type=transcript|length=3821bpRun BLAST on NCBI protein sequence of TCONS_00056333-protein >TCONS_00056333-protein ID=TCONS_00056333-protein|Name=TCONS_00056333-protein|organism=Clytia hemisphaerica|type=polypeptide|length=512bp MAFQELFGAGIFVTTIVAGSINFSTTFMMARRPFLRDNIFYLVAVIWTFVRun BLAST on NCBI transcript from alignment at scaffold_272:244288..262470- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056333 ID=TCONS_00056333|Name=TCONS_00056333|organism=Clytia hemisphaerica|type=transcript|length=18183bp|location=Sequence derived from alignment at scaffold_272:244288..262470- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_272:244288..262470- >TCONS_00056333 ID=TCONS_00056333|Name=TCONS_00056333|organism=Clytia hemisphaerica|type=CDS|length=20007bp|location=Sequence derived from alignment at scaffold_272:244288..262470- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056333 vs. Swiss-Prot (Human)
Match: NCLX (Mitochondrial sodium/calcium exchanger protein OS=Homo sapiens GN=SLC8B1 PE=1 SV=2) HSP 1 Score: 168.703 bits (426), Expect = 2.501e-43 Identity = 94/242 (38.84%), Postives = 138/242 (57.02%), Query Frame = 3
Query: 903 DLVYTNNDSVTMKDFVRPMNIVERLTG---IRKVN------WQNQSKLSKAFSIIQVPIIFMLSITCPVVDRDVQGQKWDKWLSIWHCFASPIFVVFALQVGTVSVYND---FLVYHLVLVIGSILGCLLYFISSSDYTPKFHVIFALFGFAVAVVWIKCTAQEVVNLLQTFGWISHLSYGIMGLTLLAWGNSIGDFISNLTMARNGAPRMAIAACYGGPLLNMLLGVGISCTISAIRDGGE 1592
D V +N +S D RP+ + T +R +N W+ +S KA + ++P+ F+L +T PVVD D Q W + L+ H SP+ VV LQ GT VY V+ +V++ G+ L + +F +S P+ H +FA GF + +WI A EVVN+L++ G + LS ++GLTLLAWGNSIGD S+ T+AR G PRMA +AC+GG + N+L+GVG+ C + R E
Sbjct: 276 DRVSSNTNSYDYGDEYRPLFFYQETTAQILVRALNPLDYMKWRRKSAYWKALKVFKLPVEFLLLLTVPVVDPDKDDQNWKRPLNCLHLVISPLVVVLTLQSGTYGVYEIGGLVPVWVVVVIAGTALASVTFFATSDSQPPRLHWLFAFLGFLTSALWINAAATEVVNILRSLGVVFRLSNTVLGLTLLAWGNSIGDAFSDFTLARQGYPRMAFSACFGGIIFNILVGVGLGCLLQISRSHTE 517 HSP 2 Score: 114.39 bits (285), Expect = 5.535e-26 Identity = 59/124 (47.58%), Postives = 79/124 (63.71%), Query Frame = 3
Query: 150 DVKGVTLLALGNGAPDIFSVIAAVNNKNPRTTAMAFQELFGAGIFVTTIVAGSINFSTTFMMARRPFLRDNIFYLVAVIWTFVVIYRREIKTIEATGFIALYVLYVSIVIIGQIVNRFLRRRTL 521
+V GVT LA GNGAPDIFS + A ++ P T +A LFGAG+ VTT+VAG I FM A RPF RD +FY+VAV TF++++R + A G++ LYV YV VI+ + + RR +L
Sbjct: 138 NVAGVTFLAFGNGAPDIFSALVAFSD--PHTAGLALGALFGAGVLVTTVVAGGITILHPFMAASRPFFRDIVFYMVAVFLTFLMLFRGRVTLAWALGYLGLYVFYVVTVILCTWIYQRQRRGSL 259 The following BLAST results are available for this feature:
BLAST of TCONS_00056333 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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