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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056187 ID=TCONS_00056187|Name=TCONS_00056187|organism=Clytia hemisphaerica|type=transcript|length=1521bp
AAATTCAACTGTAAATGATATAAACAGATTTGAGAGAGCACAAGGATGAT
ATATTTTGTTGGCAATATGTTTTTTGAcgagaaaatgcacttttattGAT
TTAAAGCCATGTTTACGCGTTTTACGCAGAGTTGACGCAAAATACTTGGA
GATTCCCGGAGCACGTGGaaggccatttttttcaaaaaacttggacTATT
TTAGTATTTCCAGTACCTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaattgtggaaagtttcatt
gaaaaatatttactacttcacaagatataacaaaaagtttaaaaaatgac
atttcaaatttctcatatgactacccccttaagAGAGTGACAATTCACTA
AATAACGACATCACATCTCAAAAACTTTGACTTGAATCAATAAGGAATAT
CCATAGGATGTATAATGAGTGATTCTATATCGTCATGCTACTCCACACGA
TTATGATTCTTAACCACCATGCATAAACTAACCTAACAAATCCCGGGATT
GAAAAGATTTAAAACGAACTGAAAAGTGAATAAAATGGATAATAAAGAAA
TCGCAAACCTCCAACCGTGCTATCTGACGTGAAAGGCGAACGAAGCTTTA
TGTTACCCAAAGTTTGGCAATGTAAAATTTGGTGTAAAGCTTCATGCCAC
TAGCTGAGACAACTTCAATGGAGGGTGCAAGGTTGACGTAAAGCCTTGAC
CACACGCCGAGTGCATTCTAAAAGCGGGTGCCACGATTCTGACGTATATG
CAACGAACTATAGAAAAGACACctgctgaaaaattgaaagaatagACTAA
TCACTGGGTGtgtttgggtttgtttttaGCACCCAGCACATCTTATTATT
GTTTAAGTAAGACAATAAAAGAGCTTCTAAAATAATTAATAACGAAGGCT
CAATAAAGACAATGGGGCCCTGTTGAGGGCCATAAATACCTTACATACAA
AAAAGAAGGGTCCTTTCGGGGACAAAAAAAAGCtattaataaacaaaaaa
acttattttttccttACTTTTGTTGGATATAGTTTTGGTAAGAGTATGCT
AAGATCTTTGTATGAAGCTACACGTACGGTAGATCTGGCAATACAATGGA
AAAAGGAGGTGAGCGGAAATCCACACAAATCTTTTATCCCGGGtaattaa
aaaatgacgtcatcagaaacAATGGAGGATTATCATGGTTCGTTATTCAT
AATCTGTTAGTGGAGTAATTACGACAATTGACTCATTAAAAGGATGCATA
CGGTCAGCTTAATGACTTCCAAATGGGAAACCTAAAAAGGTTTCTCTGGA
TTTGAACAATCTTTCGTGTAGCTTGTCCTGTGTAAAGCTACATGCTGATC
TAAGGTCAACTTGGATTGACTCTGTTGGACATTTTTAAAAccatataaaa
tgaaaattttgtaaaaatattttttatttatcagaaaaataattagaaat
taataaaaatcaaGCAATCCA Run BLAST on NCBI transcript from alignment at scaffold_268:161347..162867 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056187 ID=TCONS_00056187|Name=TCONS_00056187|organism=Clytia hemisphaerica|type=transcript|length=1521bp|location=Sequence derived from alignment at scaffold_268:161347..162867 (Clytia hemisphaerica)
TGGATTGCttgatttttattaatttctaattatttttctgataaataaaa
aatatttttacaaaattttcattttatatggTTTTAAAAATGTCCAACAG
AGTCAATCCAAGTTGACCTTAGATCAGCATGTAGCTTTACACAGGACAAG
CTACACGAAAGATTGTTCAAATCCAGAGAAACCTTTTTAGGTTTCCCATT
TGGAAGTCATTAAGCTGACCGTATGCATCCTTTTAATGAGTCAATTGTCG
TAATTACTCCACTAACAGATTATGAATAACGAACCATGATAATCCTCCAT
TgtttctgatgacgtcattttttaattaCCCGGGATAAAAGATTTGTGTG
GATTTCCGCTCACCTCCTTTTTCCATTGTATTGCCAGATCTACCGTACGT
GTAGCTTCATACAAAGATCTTAGCATACTCTTACCAAAACTATATCCAAC
AAAAGTaaggaaaaaataagtttttttgtttattaataGCTTTTTTTTGT
CCCCGAAAGGACCCTTCTTTTTTGTATGTAAGGTATTTATGGCCCTCAAC
AGGGCCCCATTGTCTTTATTGAGCCTTCGTTATTAATTATTTTAGAAGCT
CTTTTATTGTCTTACTTAAACAATAATAAGATGTGCTGGGTGCtaaaaac
aaacccaaacaCACCCAGTGATTAGTctattctttcaatttttcagcagG
TGTCTTTTCTATAGTTCGTTGCATATACGTCAGAATCGTGGCACCCGCTT
TTAGAATGCACTCGGCGTGTGGTCAAGGCTTTACGTCAACCTTGCACCCT
CCATTGAAGTTGTCTCAGCTAGTGGCATGAAGCTTTACACCAAATTTTAC
ATTGCCAAACTTTGGGTAACATAAAGCTTCGTTCGCCTTTCACGTCAGAT
AGCACGGTTGGAGGTTTGCGATTTCTTTATTATCCATTTTATTCACTTTT
CAGTTCGTTTTAAATCTTTTCAATCCCGGGATTTGTTAGGTTAGTTTATG
CATGGTGGTTAAGAATCATAATCGTGTGGAGTAGCATGACGATATAGAAT
CACTCATTATACATCCTATGGATATTCCTTATTGATTCAAGTCAAAGTTT
TTGAGATGTGATGTCGTTATTTAGTGAATTGTCACTCTcttaagggggta
gtcatatgagaaatttgaaatgtcattttttaaactttttgttatatctt
gtgaagtagtaaatatttttcaatgaaactttccacaattNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
AAAAGGTACTGGAAATACTAAAATAgtccaagttttttgaaaaaaatggc
cttCCACGTGCTCCGGGAATCTCCAAGTATTTTGCGTCAACTCTGCGTAA
AACGCGTAAACATGGCTTTAAATCaataaaagtgcattttctcgTCAAAA
AACATATTGCCAACAAAATATATCATCCTTGTGCTCTCTCAAATCTGTTT
ATATCATTTACAGTTGAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056187-exon-scaffold_268-1491911889:161347..162867 | TCONS_00056187-exon-scaffold_268-1491911889:161347..162867 | Clytia hemisphaerica | exon |
| TCONS_00056187-exon-scaffold_268-1510915933:161347..162867 | TCONS_00056187-exon-scaffold_268-1510915933:161347..162867 | Clytia hemisphaerica | exon |
| TCONS_00056187-exon-scaffold_268-1575043694:161347..162867 | TCONS_00056187-exon-scaffold_268-1575043694:161347..162867 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_268 | supercontig | scaffold_268:161347..162867 . |
Blast
The following BLAST results are available for this feature:
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