TCONS_00056108 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056108
Unique NameTCONS_00056108
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length365

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056108 ID=TCONS_00056108|Name=TCONS_00056108|organism=Clytia hemisphaerica|type=transcript|length=365bp
ATGCCTACACGGGATGCGGTCGAAAGTCCCATCAAAGACAAAACTTTCAT
CAAGTCACCAAGACGCTTCAAGGTGGAAGATATCAACAAACCCGAGTATT
GGCGTATGGTTCGTTCATACCTTCATCACAACCTGAAATTCAAGACGTTA
AATGGACCTGTTGCTCACTCTTTGTTTCGtctcttcaaaaagtttgaagG
TGCATTGAAAAGTCCTCGACCACCAACGATGGCCGATCCAAAGCTAGATG
CTTCATTCTTGATTATAAATGAACAACGTCCAAACTTCAATATatctgga
tttttgaaaaagtatcCTTCCTGtgttaacaccatcaaagataTACGTGG
GAAAATTGGTGTGAG
Run BLAST on NCBI

protein sequence of TCONS_00056108-protein

>TCONS_00056108-protein ID=TCONS_00056108-protein|Name=TCONS_00056108-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MPTRDAVESPIKDKTFIKSPRRFKVEDINKPEYWRMVRSYLHHNLKFKTL
NGPVAHSLFRLFKKFEGALKSPRPPTMADPKLDASFLIINEQRPNFNISG
FLKKYPSCVNTIKDIRGKIGV
Run BLAST on NCBI

transcript from alignment at scaffold_267:662652..663144-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056108 ID=TCONS_00056108|Name=TCONS_00056108|organism=Clytia hemisphaerica|type=transcript|length=493bp|location=Sequence derived from alignment at scaffold_267:662652..663144- (Clytia hemisphaerica)
ATGCCTACACGGGATGGTAAGTGAACTATTTACGATTTACTATCTCCAAT
TTTTGAAAACATGGGTGCTCTGGTTGACCCAATTTAAGACAACACATAAC
AACTTGTGGTTCCACAAAGTGAGAAAAGTTTTTCCCCTTTTTAGCGGTCG
AAAGTCCCATCAAAGACAAAACTTTCATCAAGTCACCAAGACGCTTCAAG
GTGGAAGATATCAACAAACCCGAGTATTGGCGTATGGTTCGTTCATACCT
TCATCACAACCTGAAATTCAAGACGTTAAATGGACCTGTTGCTCACTCTT
TGTTTCGTCTCTTCAAAAAGTTTGAAGGTGCATTGAAAAGTCCTCGACCA
CCAACGATGGCCGATCCAAAGCTAGATGCTTCATTCTTGATTATAAATGA
ACAACGTCCAAACTTCAATATATCTGGATTTTTGAAAAAGTATCCTTCCT
GTGTTAACACCATCAAAGATATACGTGGGAAAATTGGTGTGAG

Coding sequence (CDS) from alignment at scaffold_267:662652..663144-

>TCONS_00056108 ID=TCONS_00056108|Name=TCONS_00056108|organism=Clytia hemisphaerica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_267:662652..663144- (Clytia hemisphaerica)
CGGTCGAAAGTCCCATCAAAGACAAAACTTTCATCAAGTCACCAAGACGC
TTCAAGGTGGAAGATATCAACAAACCCGAGTATTGGCGTATGGTTCGTTC
ATACCTTCATCACAACCTGAAATTCAAGACGTTAAATGGACCTGTTGCTC
ACTCTTTGTTTCGTCTCTTCAAAAAGTTTGAAGGTGCATTGAAAAGTCCT
CGACCACCAACGATGGCCGATCCAAAGCTAGATGCTTCATTCTTGATTAT
AAATGAACAACGTCCAAACTTCAATATATCTGGATTTTTGAAAAAGTATC
CTTCCTGTGTTAACACCATCAAAGATATACGTGGGAAAATTGGTGTGATG
CCTACACGGGATGCGGTCGAAAGTCCCATCAAAGACAAAACTTTCATCAA
GTCACCAAGACGCTTCAAGGTGGAAGATATCAACAAACCCGAGTATTGGC
GTATGGTTCGTTCATACCTTCATCACAACCTGAAATTCAAGACGTTAAAT
GGACCTGTTGCTCACTCTTTGTTTCGTCTCTTCAAAAAGTTTGAAGGTGC
ATTGAAAAGTCCTCGACCACCAACGATGGCCGATCCAAAGCTAGATGCTT
CATTCTTGATTATAAATGAACAACGTCCAAACTTCAATATATCTGGATTT
TTGAAAAAGTATCCTTCCTGTGTTAACACCATCAAAGATATACGTGGGAA
AATTGGTGTGATGCCTACACGGGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035310XLOC_035310Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056108-proteinTCONS_00056108-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056108-exon-scaffold_267-1575043694:663129..663144TCONS_00056108-exon-scaffold_267-1575043694:663129..663144Clytia hemisphaericaexon
TCONS_00056108-exon-scaffold_267-1575043694:662652..663000TCONS_00056108-exon-scaffold_267-1575043694:662652..663000Clytia hemisphaericaexon
TCONS_00056108-exon-scaffold_267-1510915933:663129..663144TCONS_00056108-exon-scaffold_267-1510915933:663129..663144Clytia hemisphaericaexon
TCONS_00056108-exon-scaffold_267-1510915933:662652..663000TCONS_00056108-exon-scaffold_267-1510915933:662652..663000Clytia hemisphaericaexon
TCONS_00056108-exon-scaffold_267-1491911889:663129..663144TCONS_00056108-exon-scaffold_267-1491911889:663129..663144Clytia hemisphaericaexon
TCONS_00056108-exon-scaffold_267-1491911889:662652..663000TCONS_00056108-exon-scaffold_267-1491911889:662652..663000Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_267supercontigscaffold_267:662652..663144 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.227421	0.887087	0	0	0.613381	0	0.877158	1.64237	0.574931	1.66167	0	0.605846	0.453752	1.41368	1.29137	2.21735	1.02435	0	1.69228	1.24723	0.439768	0.321755	0.260757	0.474132	0	3.7046	0.62368	0	0.50484	0.514352
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056108 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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