|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056102 ID=TCONS_00056102|Name=TCONS_00056102|organism=Clytia hemisphaerica|type=transcript|length=1319bp
AAACAAGTTGCAGATCAAACCTCTGTAACAAATTCTAATACATTGACAAA
ATTAAAGGAAAAGCTtgagaataaaagaaaaagcgacAATGTTACTTTTT
CAAAGGCTGGACACCTCGATCAGTTCAAACATAATACAGAAGTTTTGGAG
AAAATTGATGATGCCATTGAAGCTATCGAAATGGACGTGGAAGGAATAAC
AACTGCTTTAAAGAAAGAGAGATTTTGGGAATTTGAGCAATCTTCCGAAA
GCGTCTCCGTTGCTGGtaagataatgaaattttcgcACTTTTgggaaaaa
gatttgaaagcATCAAAATTCGCCCTGGGTGTCGTACGTGAAGGCTATAA
AATACCCTTTGAATCAAACCCACCACCTTTTTACGCTAAGAACAATGCGT
CCAGTTTAAAGAACGACCATTTTGTCGAAGAcagtatcaaaaaacttttg
gaaGACAGCTGTATTGAAAAAGTAGCGGAGCCAACCTACTGCATCAACCC
CTTAACCGTAGCAGAAAAAGCTTAGGTTGGTATTAGATCTCAGACACGTC
AATAAATTCATCAaaccaaaaaaattcaaatacgaAAATTTAAAACAAGC
TTCAGAGTTAATCGACCAGAACGATTTTTTAATCACTTTCGACCTCAAAA
GTGGATACCATCATGTACCGATCAATCCTgtttttcgaatctttttggGA
TTCGCATGGGAATTCGACGGTGAAATGCAATNATCAATCATATTTTTCGA
ACCTTTTTGGGATTCGCATGGGAATTCGACggtaaaatgcaattttttgt
gTTCAAAGTTTTGCCATTTGGGTTAAATATAGCATGCttagtttttacaa
agctcaTGCGACAATTAGTAAAGAGATGGCGTTCGATGGGAATTAAATGC
GCGAGGTATCTTGATGACGGTATAGCTGGGGATAGTTCACATTTTTCTTT
GATTCGATCAAGAGATAGGATGCTGCAAGACATGCAATCAGCTGGTTTGA
CTGTAAACTTTGAAAAGTCGAGCCTCGAAcccgaaaaaagaaaaacatgg
cTAGGTTTCATAATCGAgactgaaaaaatgaaatttgaagtCCCAAtaac
aaaaattctgaaagtcCAAAACTTACTTTTAGAAGCTTTAAATTGTGAAT
TTATTTCAGCTAGAGAAATTTCTAGAATAGCAGGAAATCTTATTTCTATG
GCACAAGCTATCGGGCCacttgtttatttatttacaaaGCAATTGTACAA
ATTTGTCGAATCCAGTTTCTCTTGGGACAAAAAATGTCTCCTAACATTTG
ATGTAAGACAAGAGCTCGT Run BLAST on NCBI transcript from alignment at scaffold_267:540432..542405- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056102 ID=TCONS_00056102|Name=TCONS_00056102|organism=Clytia hemisphaerica|type=transcript|length=1974bp|location=Sequence derived from alignment at scaffold_267:540432..542405- (Clytia hemisphaerica)
AAACAAGTTGCAGATCAAACCTCTGTAACAAATTCTAATACATTGACAAA
ATTAAAGGAAAAGCTTGAGAATAAAAGAAAAAGCGACAATGTTACTTTTT
CAAAGGCTGGACACCTCGATCAGTTCAAACATAATACAGAAGTTTTGGAG
AAAATTGATGATGCCATTGAAGCTATCGAAATGGACGTGGAAGGAATAAC
AACTGCTTTAAAGAAAGGTAAGCAATTACTTGAAACCAGGATAAATCATT
TAAGGATCGCCGATGCCTAACAGTTAAGGAATTTAAAGCTAATGAATTGA
CATCTGGGGAGGCAGAGGAGAAAAGACTAAAGAGGGCAATAAAAAATGCA
GAGATTGTTAAAGGCCGTTTTTATAAAAAACAAAAACTTTCCGAAGATTC
GGATTATAATAAAGTAATAAGAAATAGAACCGAACAAAGAAGTCGCATGG
ACGAAGTAGTATGCTACTCCTGTAAACGTGTCGGACATTACGTATCGCAC
TGTCCCTTTCCGAATATAGTATCGCCTTTGTCTCTCCCATACTCAACAAA
ATCACATTCATCGTCATCAAAAAATAAAAATTCGTCAAGTTATTCAAAAA
GCTCGAAAGACGGTAAAAGTACCTCTGGATAAAAATATTCGTTATCACTT
TAAATTTCACAGTCAAGTTGCTTACTAGTGTTGAAAAATTGAAGCGTTAT
AATTCAAACGACTTTCCTTAGTATTATTTTATCTTTTATGAACAATTGAA
TTTATTGTGTTTGATGTACTTTAATCAAAAGACAGTAATTTCAAATTTTG
TAACATCGTTGTTTTCCAAATAACTTTCGCCAATTTGATATCAAGTTTTT
GTTCGTTTTTTCGCTTCTCCAGAGAGATTTTGGGAATTTGAGCAATCTTC
CGAAAGCGTCTCCGTTGCTGGTAAGATAATGAAATTTTCGCACTTTTGGG
AAAAAGATTTGAAAGCATCAAAATTCGCCCTGGGTGTCGTACGTGAAGGC
TATAAAATACCCTTTGAATCAAACCCACCACCTTTTTACGCTAAGAACAA
TGCGTCCAGTTTAAAGAACGACCATTTTGTCGAAGACAGTATCAAAAAAC
TTTTGGAAGACAGCTGTATTGAAAAAGTAGCGGAGCCAACCTACTGCATC
AACCCCTTAACCGTAGCAGAAAAAGCTTAGGTTGGTATTAGATCTCAGAC
ACGTCAATAAATTCATCAAACCAAAAAAATTCAAATACGAAAATTTAAAA
CAAGCTTCAGAGTTAATCGACCAGAACGATTTTTTAATCACTTTCGACCT
CAAAAGTGGATACCATCATGTACCGATCAATCCTGTTTTTCGAATCTTTT
TGGGATTCGCATGGGAATTCGACGGTGAAATGCAATNATCAATCATATTT
TTCGAACCTTTTTGGGATTCGCATGGGAATTCGACGGTAAAATGCAATTT
TTTGTGTTCAAAGTTTTGCCATTTGGGTTAAATATAGCATGCTTAGTTTT
TACAAAGCTCATGCGACAATTAGTAAAGAGATGGCGTTCGATGGGAATTA
AATGCGCGAGGTATCTTGATGACGGTATAGCTGGGGATAGTTCACATTTT
TCTTTGATTCGATCAAGAGATAGGATGCTGCAAGACATGCAATCAGCTGG
TTTGACTGTAAACTTTGAAAAGTCGAGCCTCGAACCCGAAAAAAGAAAAA
CATGGCTAGGTTTCATAATCGAGACTGAAAAAATGAAATTTGAAGTCCCA
ATAACAAAAATTCTGAAAGTCCAAAACTTACTTTTAGAAGCTTTAAATTG
TGAATTTATTTCAGCTAGAGAAATTTCTAGAATAGCAGGAAATCTTATTT
CTATGGCACAAGCTATCGGGCCACTTGTTTATTTATTTACAAAGCAATTG
TACAAATTTGTCGAATCCAGTTTCTCTTGGGACAAAAAATGTCTCCTAAC
ATTTGATGTAAGACAAGAGCTCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056102-exon-scaffold_267-1575043694:542189..542405 | TCONS_00056102-exon-scaffold_267-1575043694:542189..542405 | Clytia hemisphaerica | exon |
| TCONS_00056102-exon-scaffold_267-1575043694:540432..541533 | TCONS_00056102-exon-scaffold_267-1575043694:540432..541533 | Clytia hemisphaerica | exon |
| TCONS_00056102-exon-scaffold_267-1510915933:542189..542405 | TCONS_00056102-exon-scaffold_267-1510915933:542189..542405 | Clytia hemisphaerica | exon |
| TCONS_00056102-exon-scaffold_267-1510915933:540432..541533 | TCONS_00056102-exon-scaffold_267-1510915933:540432..541533 | Clytia hemisphaerica | exon |
| TCONS_00056102-exon-scaffold_267-1491911889:542189..542405 | TCONS_00056102-exon-scaffold_267-1491911889:542189..542405 | Clytia hemisphaerica | exon |
| TCONS_00056102-exon-scaffold_267-1491911889:540432..541533 | TCONS_00056102-exon-scaffold_267-1491911889:540432..541533 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_267 | supercontig | scaffold_267:540432..542405 - |
Blast
The following BLAST results are available for this feature:
|
