TCONS_00056074 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056074
Unique NameTCONS_00056074
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1386

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056074 ID=TCONS_00056074|Name=TCONS_00056074|organism=Clytia hemisphaerica|type=transcript|length=1386bp
TGAACCTAAAATTCCATTATCAGATATTCTCAACCTGActaatttggaga
tttttcaTAATCGTTTTAAATGCAATAAACAAAACGATGAATCAATCATT
GAACCCCTGGACGCTCCACCGATATCTGGTTCTACACCAAAAAAATCGAA
CGTCCAAGTCGTAGAAGCTGAAATATCCGAAATTAATTTCGAAGTTGTCA
AAACCGTCAAGCCTAATGATGTTGTCGACACAGAAAAATCCGCCAAAAAG
TCCTTGAAATTGCTTCCATTTTACAATCTTACCGAAGTCGATTTCAAATT
GGTCATCGATAATTTGGACACTACACATAAAGTTTCAGACATGaacgaaa
acaaccaaaacgtCAGCACACACCATACAGTCAAGGTCGCTGTTTTTGAT
CGAGTCATTCCACCAAAGGAATTAAGCGCAACACGCCCGAAATGTACCAT
TGAAGAATTAGATGATAGTGCGTTCCTTTGCTCATCCGCTGAGCACGTCA
AACAGCGACTGAATTATATTGTCATGGTATCCCGAATTTGACAGAATATG
TTAAATGCATGGAACCATTGAAATCTGAGGTCATCCAACATATCGCACAT
GATCATTCTAAAGAAATGAGAAGAAAGAGTGACAAAGTCTTTTTGGGAAT
AATCTATGAGGATGAAAACACTAATGTAGGAGGCAGAAAGATTCTTGAGA
ATTTACAAGGGTACCAGTCAACAACTGGAGAAGGAGATGACAAGACCTTT
ACTGAAAAAGCAGTTGTTGGGGACCAGTTGACAATCGAGAGATTGCTCCA
GATAATCTTTCAAGCACTAGGTGCGTTCGACCCAGAAGAGCGATTCGAAG
GAATTCACTGTGAGGTTGCTGATTTCCATTTTGACATGAAAATAATGCAG
GTAACAAATTTATACTTGCAACGCTTTTAAAAAATTCCTACTTTCATGGA
ACTAACTACTGTGCTGGTTTTGAATCGAAAAGGCGAACGTTTCCAAATTT
AAACATCGAATTTCctaatattttcattcaaattttttattctatATTTT
TTAGTATGCCATGGAtcatttcttcaaaaattcttTCACTGACAAGTGCA
CGTTGGGGTCCGACAAATCGTTCATTAACAGAAGAAATGTGTCAACTGAA
GTCAAAAAGCGTTATTCTGCAGTCAAAAGTTTTCTTGACGTTGAATTTCA
TTGCTGCTGCACTAGAGATCCTTAAAATTAATGACCTTGGCGAGGAAACA
AAAACTTTCAACATGAATTATTTTAAAACGAAAGCTTCAACAACGGAAAA
AAGAAGGTAAACTTAACTTCTTTAGAAGGGAAACGTAAATGAGGGTTACT
CTTGTCCTCCTCAAAAAGACACAAATCCGTTTTTTT
Run BLAST on NCBI

protein sequence of TCONS_00056074-protein

>TCONS_00056074-protein ID=TCONS_00056074-protein|Name=TCONS_00056074-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
EPKIPLSDILNLTNLEIFHNRFKCNKQNDESIIEPLDAPPISGSTPKKSN
VQVVEAEISEINFEVVKTVKPNDVVDTEKSAKKSLKLLPFYNLTEVDFKL
VIDNLDTTHKVSDMNENNQNVSTHHTVKVAVFDRVIPPKELSATRPKCTI
EELDDSAFLCSSAEHVKQRLNYIVMVSRI
Run BLAST on NCBI

transcript from alignment at scaffold_267:253274..256322+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056074 ID=TCONS_00056074|Name=TCONS_00056074|organism=Clytia hemisphaerica|type=transcript|length=3049bp|location=Sequence derived from alignment at scaffold_267:253274..256322+ (Clytia hemisphaerica)
TGAACCTAAAATTCCATTATCAGGTATGGTAATATTTTAACATTAAAATA
GTGGTAAAATAAGAATcatcaataattattttgaattgaatACATTATGT
ATATTGGTTCTGTATTATACAATAAAGTGTTAAGTTTACATTCTGAATAT
ATGAATTATCTTAGAATTAATCAATTTAAGGGTATAAAGAGTTTAGCTCC
ATTCTTTTTGAACAACATGCAAATCTAGTAATCAACCCTTCTCAAGTGGG
ATCATCATCTCGGGAAAAAATTCAAAGAGgattttatgacgtcacatcat
tttaaaaatattatgttAATATCATATCTTAATAGATTTAGGCTGATTTA
GGGTAGTTTGGGCGTGCTGTAGTGATCAGATCATGATCAAATTATGGGGT
TCTCATTCAAAATTGTCGAAAGATAATTCTATTGGCTACATGTTTCAATT
CATATAAAAATTTACATTTCTTGTCTCTTAGATATTCTCAACCTGActaa
tttggagatttttcaTAATCGTTTTAGCaagtcttttttcaaaaactttt
ctaaaGATCTACAGaaagagtttgaaaaaaaaattccagctTGAATAATT
CTAAAAAGCTCGTTCAAAAACAGTATAAATTTACCACTTCTAAACggtaa
aaaaatgtataaaaaagtataaaaatgttAGCAAAAAATTACCAATTGAA
GGTGGAAATATGTAAACGAAACAACTCATTTAATTTCATTCACTAACTTA
TTTAGAATGCAATAAACAAAACGATGAATCAATCATTGAACCCCTGGACG
CTCCACCGATATCTGGTAACAAAATTagttattttttacaaatttgctag
tatattaatatttatttaaatatttctttaggTATCCTATCACCCTGTGT
TATCACAGTATAACGTTTTCTTCCAGGTTCTACACCAAAAAAATCGAACG
TCCAAGTCGTAGAAGCTGAAATATCCGAAATTAATTTCGAAGTTGTCAAA
ACCGTCAAGCCTAATGATGTTGTCGACACAGAAAAATCCGCCAAAAAGTC
CTTGAAATTGCTTCCATTTTACAATCGTAAGTTTATGAACTTGTTCTTCT
ATTTGCAGTTCAGATATGCAAGCGATTATGTAcataaataatttcatttt
ctattCAACGTTTCGTATCTTCCATTGTAGTTACCGAAGTCGATTTCAAA
TTGGTCATCGATAATTTGGACACTACACATAAAGTTTCAGACATGaacga
aaacaaccaaaacgtCAGCACACACCATACAGTCAAGGTCGCTGTTTTTG
ATCGAGTCATTCCACCAAAGGAATTAAGCGCAACACGCCCGAAATGTACC
ATTGAAGAATTAGATGATAGTGCGTTCCTTTGCTCATCCGCTGAGCACGT
CAAACAGCGACTGAATTATATTGTCATGGTATCCCGAATTTGACAGAATA
TGTTAAATGCATGGAACCATTGAAATCTGAGGTCATCCAACATATCGCAC
ATGATCATTCTAAAGAAATGAGAAGAAAGAGTGACAAAGTAAGTCTGACT
ATATTGAATTGGGTAAACATGATACAATAGAAAAATTGTTTGCACTCATA
AATTCtcgattagtactagtaatcgtatggtttggagtgcaattaacgat
taatcacgagtaacaaaggagaaaatagtaatttgcacgagtccgaagga
cgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNcaccgaagagtgcaaaaagtg
gtaatagtgcaattaacgattaattgcactcctctaaaccaatcagattc
gagtaattttgcacggctgacgattagaCTTTAAACACAGAATTATATTA
AAATTcttctaaatatcaaaattaaaCGTGATTCATTTGTGTTCTTCAGG
TCTTTTTGGGAATAATCTATGAGGATGAAAACACTAATGTAGGAGGCAGA
AAGATTCTTGAGAATTTACAAGGGTACCAGTCAACAACTGGAGAAGGAGA
TGACAAGACCTTTACTGAAAAAGCAGTTGTTGGGGACCAGTTGACAATCG
AGAGATTGCTCCAGATAATCTTTCAAGCACTAGGTGCGTTCGACCCAGAA
GAGCGATTCGAAGGAATTCACTGTGAGGTTGCTGATTTCCATTTTGACAT
GAAAATAATGCAGGTAACAAATTTATACTTGCAACGCTTTTAAAAAATTC
CTACTTTCATGGAACTAACTACTGTGCTGGTTTTGAATCGAAAAGGCGAA
CGTTTCCAAATTTAAACATCGAATTTCctaatattttcattcaaattttt
tattctatATTTTTTAGTATGCCATGGAtcatttcttcaaaaattcttTC
ACTGACAAGTGCACGTTGGGGTCCGACAAATCGTTCATTAACAGAAGAAA
TGTGTCAACTGAAGTCAAAAAGCGTTATTCTGCAGTCAAAAGTTTTCTTG
ACGTTGAATTTCATTGCTGCTGCACTAGAGATCCTTAAAATTAATGACCT
TGGCGAGGAAACAAAAACTTTCAACATGAATTATTTTAAAACGAAAGCTT
CAACAACGGAAAAAAGAAGGTAAACTTAACTTCTTTAGAAGGGAAACGTA
AATGAGGGTTACTCTTGTCCTCCTCAAAAAGACACAAATCCGTTTTTTT

Coding sequence (CDS) from alignment at scaffold_267:253274..256322+

>TCONS_00056074 ID=TCONS_00056074|Name=TCONS_00056074|organism=Clytia hemisphaerica|type=CDS|length=2700bp|location=Sequence derived from alignment at scaffold_267:253274..256322+ (Clytia hemisphaerica)
GAACCTAAAATTCCATTATCAGATATTCTCAACCTGActaatttggagat
ttttcaTAATCGTTTTAAATGCAATAAACAAAACGATGAATCAATCATTG
AACCCCTGGACGCTCCACCGATATCTGGTTCTACACCAAAAAAATCGAAC
GTCCAAGTCGTAGAAGCTGAAATATCCGAAATTAATTTCGAAGTTGTCAA
AACCGTCAAGCCTAATGATGTTGTCGACACAGAAAAATCCGCCAAAAAGT
CCTTGAAATTGCTTCCATTTTACAATCTTACCGAAGTCGATTTCAAATTG
GTCATCGATAATTTGGACACTACACATAAAGTTTCAGACATGaacgaaaa
caaccaaaacgtCAGCACACACCATACAGTCAAGGTCGCTGTTTTTGATC
GAGTCATTCCACCAAAGGAATTAAGCGCAACACGCCCGAAATGTACCATT
GAAGAATTAGATGATAGTGCGTTCCTTTGCTCATCCGCTGAGCACGTCAA
ACAGCGACTGAATTATATTGTCATGGTATCCCGAATTTGAGAACCTAAAA
TTCCATTATCAGATATTCTCAACCTGActaatttggagatttttcaTAAT
CGTTTTAAATGCAATAAACAAAACGATGAATCAATCATTGAACCCCTGGA
CGCTCCACCGATATCTGGTTCTACACCAAAAAAATCGAACGTCCAAGTCG
TAGAAGCTGAAATATCCGAAATTAATTTCGAAGTTGTCAAAACCGTCAAG
CCTAATGATGTTGTCGACACAGAAAAATCCGCCAAAAAGTCCTTGAAATT
GCTTCCATTTTACAATCTTACCGAAGTCGATTTCAAATTGGTCATCGATA
ATTTGGACACTACACATAAAGTTTCAGACATGaacgaaaacaaccaaaac
gtCAGCACACACCATACAGTCAAGGTCGCTGTTTTTGATCGAGTCATTCC
ACCAAAGGAATTAAGCGCAACACGCCCGAAATGTACCATTGAAGAATTAG
ATGATAGTGCGTTCCTTTGCTCATCCGCTGAGCACGTCAAACAGCGACTG
AATTATATTGTCATGGTATCCCGAATTTGAGAACCTAAAATTCCATTATC
AGATATTCTCAACCTGActaatttggagatttttcaTAATCGTTTTAAAT
GCAATAAACAAAACGATGAATCAATCATTGAACCCCTGGACGCTCCACCG
ATATCTGGTTCTACACCAAAAAAATCGAACGTCCAAGTCGTAGAAGCTGA
AATATCCGAAATTAATTTCGAAGTTGTCAAAACCGTCAAGCCTAATGATG
TTGTCGACACAGAAAAATCCGCCAAAAAGTCCTTGAAATTGCTTCCATTT
TACAATCTTACCGAAGTCGATTTCAAATTGGTCATCGATAATTTGGACAC
TACACATAAAGTTTCAGACATGaacgaaaacaaccaaaacgtCAGCACAC
ACCATACAGTCAAGGTCGCTGTTTTTGATCGAGTCATTCCACCAAAGGAA
TTAAGCGCAACACGCCCGAAATGTACCATTGAAGAATTAGATGATAGTGC
GTTCCTTTGCTCATCCGCTGAGCACGTCAAACAGCGACTGAATTATATTG
TCATGGTATCCCGAATTTGAGAACCTAAAATTCCATTATCAGATATTCTC
AACCTGActaatttggagatttttcaTAATCGTTTTAAATGCAATAAACA
AAACGATGAATCAATCATTGAACCCCTGGACGCTCCACCGATATCTGGTT
CTACACCAAAAAAATCGAACGTCCAAGTCGTAGAAGCTGAAATATCCGAA
ATTAATTTCGAAGTTGTCAAAACCGTCAAGCCTAATGATGTTGTCGACAC
AGAAAAATCCGCCAAAAAGTCCTTGAAATTGCTTCCATTTTACAATCTTA
CCGAAGTCGATTTCAAATTGGTCATCGATAATTTGGACACTACACATAAA
GTTTCAGACATGaacgaaaacaaccaaaacgtCAGCACACACCATACAGT
CAAGGTCGCTGTTTTTGATCGAGTCATTCCACCAAAGGAATTAAGCGCAA
CACGCCCGAAATGTACCATTGAAGAATTAGATGATAGTGCGTTCCTTTGC
TCATCCGCTGAGCACGTCAAACAGCGACTGAATTATATTGTCATGGTATC
CCGAATTTGAGAACCTAAAATTCCATTATCAGATATTCTCAACCTGActa
atttggagatttttcaTAATCGTTTTAAATGCAATAAACAAAACGATGAA
TCAATCATTGAACCCCTGGACGCTCCACCGATATCTGGTTCTACACCAAA
AAAATCGAACGTCCAAGTCGTAGAAGCTGAAATATCCGAAATTAATTTCG
AAGTTGTCAAAACCGTCAAGCCTAATGATGTTGTCGACACAGAAAAATCC
GCCAAAAAGTCCTTGAAATTGCTTCCATTTTACAATCTTACCGAAGTCGA
TTTCAAATTGGTCATCGATAATTTGGACACTACACATAAAGTTTCAGACA
TGaacgaaaacaaccaaaacgtCAGCACACACCATACAGTCAAGGTCGCT
GTTTTTGATCGAGTCATTCCACCAAAGGAATTAAGCGCAACACGCCCGAA
ATGTACCATTGAAGAATTAGATGATAGTGCGTTCCTTTGCTCATCCGCTG
AGCACGTCAAACAGCGACTGAATTATATTGTCATGGTATCCCGAATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035290XLOC_035290Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056074-exon-scaffold_267-1491911889:253274..253296TCONS_00056074-exon-scaffold_267-1491911889:253274..253296Clytia hemisphaericaexon
TCONS_00056074-exon-scaffold_267-1510915933:253274..253296TCONS_00056074-exon-scaffold_267-1510915933:253274..253296Clytia hemisphaericaexon
TCONS_00056074-exon-scaffold_267-1575043694:253274..253296TCONS_00056074-exon-scaffold_267-1575043694:253274..253296Clytia hemisphaericaexon
TCONS_00056074-exon-scaffold_267-1491911889:253755..253799TCONS_00056074-exon-scaffold_267-1491911889:253755..253799Clytia hemisphaericaexon
TCONS_00056074-exon-scaffold_267-1510915933:253755..253799TCONS_00056074-exon-scaffold_267-1510915933:253755..253799Clytia hemisphaericaexon
TCONS_00056074-exon-scaffold_267-1575043694:253755..253799TCONS_00056074-exon-scaffold_267-1575043694:253755..253799Clytia hemisphaericaexon
TCONS_00056074-exon-scaffold_267-1491911889:254029..254088TCONS_00056074-exon-scaffold_267-1491911889:254029..254088Clytia hemisphaericaexon
TCONS_00056074-exon-scaffold_267-1510915933:254029..254088TCONS_00056074-exon-scaffold_267-1510915933:254029..254088Clytia hemisphaericaexon
TCONS_00056074-exon-scaffold_267-1575043694:254029..254088TCONS_00056074-exon-scaffold_267-1575043694:254029..254088Clytia hemisphaericaexon
TCONS_00056074-exon-scaffold_267-1491911889:254200..254349TCONS_00056074-exon-scaffold_267-1491911889:254200..254349Clytia hemisphaericaexon
TCONS_00056074-exon-scaffold_267-1510915933:254200..254349TCONS_00056074-exon-scaffold_267-1510915933:254200..254349Clytia hemisphaericaexon
TCONS_00056074-exon-scaffold_267-1575043694:254200..254349TCONS_00056074-exon-scaffold_267-1575043694:254200..254349Clytia hemisphaericaexon
TCONS_00056074-exon-scaffold_267-1491911889:254454..254811TCONS_00056074-exon-scaffold_267-1491911889:254454..254811Clytia hemisphaericaexon
TCONS_00056074-exon-scaffold_267-1510915933:254454..254811TCONS_00056074-exon-scaffold_267-1510915933:254454..254811Clytia hemisphaericaexon
TCONS_00056074-exon-scaffold_267-1575043694:254454..254811TCONS_00056074-exon-scaffold_267-1575043694:254454..254811Clytia hemisphaericaexon
TCONS_00056074-exon-scaffold_267-1491911889:255573..256322TCONS_00056074-exon-scaffold_267-1491911889:255573..256322Clytia hemisphaericaexon
TCONS_00056074-exon-scaffold_267-1510915933:255573..256322TCONS_00056074-exon-scaffold_267-1510915933:255573..256322Clytia hemisphaericaexon
TCONS_00056074-exon-scaffold_267-1575043694:255573..256322TCONS_00056074-exon-scaffold_267-1575043694:255573..256322Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056074-proteinTCONS_00056074-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_267supercontigscaffold_267:253274..256322 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.678913	0.61121	0.531126	0.62357	0.424054	0.12101	0.126075	0.118248	0.170023	1.31309	0.370746	0.358792	0.547071	0.50697	0.304333	0.43518	0.256555	0.356979	0.70126	0.599786	0.349884	0.371567	0.262248	0.188158	0.0481534	0.0429758	0.499791	0.408887	0.457394	0.940065
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056074 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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