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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056020 ID=TCONS_00056020|Name=TCONS_00056020|organism=Clytia hemisphaerica|type=transcript|length=6961bpRun BLAST on NCBI transcript from alignment at scaffold_266:365784..381423- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056020 ID=TCONS_00056020|Name=TCONS_00056020|organism=Clytia hemisphaerica|type=transcript|length=15640bp|location=Sequence derived from alignment at scaffold_266:365784..381423- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00056020 vs. Swiss-Prot (Human)
Match: SIN3A (Paired amphipathic helix protein Sin3a OS=Homo sapiens GN=SIN3A PE=1 SV=2) HSP 1 Score: 775.007 bits (2000), Expect = 0.000e+0 Identity = 386/714 (54.06%), Postives = 516/714 (72.27%), Query Frame = 2
Query: 3233 DVTLAEAIKLGNFSEFAFFEKVRKALKSPEVYENFLRCLVLFNSEVITRSELIQLTTTFLGKFPDLFTWFKVFLGYKENQQTETNITTFKDRGTGGELAHLEIDFASCKRSGASYRAYPNTYVQPKCVGRTQLCKEVLNDTWVSLPSWSEDTQFPGTRKTQYEEYIYKCEDERFELDVVIETNLCTIKVLEGVQKKLSRMSSDDQQKFRLDNSLGGTSDIIHKKAIYRIYGDKSPEVIDGLKKTPHVVLPLVLKRLKQKDEEWRTAQKQFNKIWRDQNEKYYLKSLDHQGINFKQNDLKNIRPKSLVREIEQILEERTDQMEDGNAEI-VGPHFEFSYPDASLLEDATALIIHHMKRQTGIHKEDKTKIKSILLIFLQEMFFASPGELS--DDEQDADEEMPDATAPSVKSPESTNTPSKSSSKDKEAVLSPSTLIKEENADDFYNLFFVNNTWYILLRLHQMLCERLLKMYKQAMKVASFEARD----------KKYRHEGTAEALRLKKPAVTDVEDFYPAFQDMVKNLLDGQLETNQYEDTLRETFGVNSFVAFTMDKLIQNIVRQLHSLVTDETSLKLMDIFKQEKKNKAAGGPSVTATARTPFELSYQKKVENLLVDENCYKIYLHKNKTSCKVTFELLPTEDDQSEDQNEIEKWSDYIEKYIGSSEIVTELRDHLLKKPIFLLRNARVIRK----RVEDAQNEKESNT 5323
D ++A+A K G +E FF+KVRKAL+S E YENFLRCLV+FN EVI+R+EL+QL + FLGKFP+LF WFK FLGYKE+ ET K+R T G +EID+ASCKR G+SYRA P +Y QPKC GRT LCKEVLNDTWVS PSWSED+ F ++KTQYEE+IY+CEDERFELDVV+ETNL TI+VLE +QKKLSR+S+++Q KFRLDN+LGGTS++IH+KA+ RIY DK+ ++IDGL+K P + +P+VLKRLK K+EEWR AQ+ FNK+WR+QNEKYYLKSLDHQGINFKQND K +R KSL+ EIE I +ER +Q + NA + VGPH +Y D +LEDA ALIIHH+KRQTGI KEDK KIK I+ F+ ++ FA G+LS ++E++ + ++ +AT K +P KS + + S + K D+ YNLF+VNN WYI +RLHQ+LC RLL++ QA + E R+ K+ + + A LRLK+P DVED+YPAF DMV++LLDG ++++QYED+LRE F +++++AFTMDKLIQ+IVRQL +V+DE +++ D++ E N A GG T +R+ E +YQ+K E L+ DENC+K+ +++ ++T ELL TE++ S+D E E+WSDY+E+Y+ S ELR+HL +KP+FL RN R IRK R + + KE N+
Sbjct: 449 DSSMADASKHGGGTESLFFDKVRKALRSAEAYENFLRCLVIFNQEVISRAELVQLVSPFLGKFPELFNWFKNFLGYKESVHLETYP---KERATEG--IAMEIDYASCKRLGSSYRALPKSYQQPKCTGRTPLCKEVLNDTWVSFPSWSEDSTFVSSKKTQYEEHIYRCEDERFELDVVLETNLATIRVLEAIQKKLSRLSAEEQAKFRLDNTLGGTSEVIHRKALQRIYADKAADIIDGLRKNPSIAVPIVLKRLKMKEEEWREAQRGFNKVWREQNEKYYLKSLDHQGINFKQNDTKVLRSKSLLNEIESIYDERQEQATEENAGVPVGPHLSLAYEDKQILEDAAALIIHHVKRQTGIQKEDKYKIKQIMHHFIPDLLFAQRGDLSDVEEEEEEEMDVDEATGAVKKHNGVGGSPPKS-----KLLFSNTAAQKLRGMDEVYNLFYVNNNWYIFMRLHQILCLRLLRICSQAERQIEEENREREWEREVLGIKRDKSDSPAIQLRLKEPMDVDVEDYYPAFLDMVRSLLDGNIDSSQYEDSLREMFTIHAYIAFTMDKLIQSIVRQLQHIVSDEICVQVTDLYLAENNNGATGGQLNTQNSRSLLESTYQRKAEQLMSDENCFKLMFIQSQGQVQLTIELLDTEEENSDDPVEAERWSDYVERYMNSDTTSPELREHLAQKPVFLPRNLRRIRKCQRGREQQEKEGKEGNS 1152 HSP 2 Score: 171.4 bits (433), Expect = 1.643e-42 Identity = 86/114 (75.44%), Postives = 93/114 (81.58%), Query Frame = 2
Query: 2090 PPTAA--GQQQYQRLKVEDALSYLDQVKLQFGNQPQVYNEFLDIMKEFKSQTIDTPGVISRVSALFKGHPDLIVGFNTFLPPGYKIEVSLTDINTVNVCAPTGTTTHLISGSGL 2425
PP A GQQQ+QRLKVEDALSYLDQVKLQFG+QPQVYN+FLDIMKEFKSQ+IDTPGVISRVS LFKGHPDLI+GFNTFLPPGYKIEV D+ VNV P H I G+
Sbjct: 107 PPVAPVQGQQQFQRLKVEDALSYLDQVKLQFGSQPQVYNDFLDIMKEFKSQSIDTPGVISRVSQLFKGHPDLIMGFNTFLPPGYKIEVQTNDM--VNVTTP--GQVHQIPTHGI 216 HSP 3 Score: 98.2117 bits (243), Expect = 4.004e-20 Identity = 54/102 (52.94%), Postives = 67/102 (65.69%), Query Frame = 2
Query: 2651 SPGMQSQTQAQ-HHAINYVTKIKNRFQGQPEVYQKFLDILNNYQTEQKAIKENSVDQYGRPLQEQEVFNREGKLASEVYAQVAKLFNKQEDLLKEFSQFLPD 2953
+P +Q+ + +HAINYV KIKNRFQGQP++Y+ FL+IL+ YQ EQ+ KE + Y L EQ EVYAQVA+LF QEDLL EF QFLPD
Sbjct: 293 APSLQNNQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGN-YTPALTEQ-----------EVYAQVARLFKNQEDLLSEFGQFLPD 382 The following BLAST results are available for this feature:
BLAST of TCONS_00056020 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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