TCONS_00055965 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055965
Unique NameTCONS_00055965
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1923

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055965 ID=TCONS_00055965|Name=TCONS_00055965|organism=Clytia hemisphaerica|type=transcript|length=1923bp
CAATTTTGGTTAAATGTTTTGGCATTATAAAGTCtgtgatttatttttat
ttttgaggtATAATTATTCAAGATCTGGAGTTTTGAAAAGGGACCaagaa
aatgaattaaaaaaattatctcatTGAGTGAAAAATctcagatatttttt
ggatttttgttgCTGCCAATTTGAAAACTAATTGGTTCAAGGTTTGACGA
CATAAAAATCAAGCCGGTATAGTCAAAATGGGTTCAAATAAGCAAGGTGA
AATGCAGAAAACTGTCAAAgtgaaaatcgcaaaaataaacaataacaaca
acaacaacgctAAGAAAACAAAAGCACCCAACCCACCCAAAATAAAAACA
GTCATCACTACAAAAACCAAAGTCAAAGAAACGAAAACAAAGGAGACAAA
AGTCAATATAAAAAACACTCCAGGAAGCAGTAAAACCAccataaaaacaa
caacaaaaactgGGCAGAGTTCAGGATCTACTGTAAAATTACCTAATATC
AGCATCCCAAGAATACCTACACCCACAGTTGCATATGCTCAATTTAAAGC
CTTGAAATGGACTAAATGGACCAAGATGGTTTTTGCCTttcttattttat
tgtttttcatgCAAATAGTATGCACATCGACTACGAGTTGGGTTGCTTTT
GGATCAACACAATCTCATGGATTGTTTCGTGTTTGCAAAGAAGAAAGTGT
TGGATCAGGGACAACAGAATGCTCAGATTATCAACATTTGGCTGACTTCC
AGATTCAAATGCAAGCATTAATGATGGTGTCAATcttcatgtttttgttt
tgcttcGTTTACCTCATCTTCTGGATGAAAGGAAGAAATCTTCCACTGAT
CGTTTTGGCTGTGCTGGTTGAGATTACAGccttaCTAATCGTGGTCTCAG
CTTCTATATTCACTGACAAACATTTCTGTGCGGTGGGACGCTCTAAACTT
GGAACATTTGGTTGGAGCTATTACCTAGCATGGGCTACAAGTCTTGTTGC
TATAGTTACTGGAATATTGGTCACCAAAGTAAGTTGATTGGTGTACTGTA
ACAAGAAAGTTTGTGTATGGTAATGATATAGAGTAATGGTGATTCATAGT
TGAGAGtggaaaaattcattttctttaaattaaTCTGCTGAAATAGCAAA
CCAAAAAGACATTCCCTTTATTTATAAACGTTTCTTTCGGCTGCCAgtaa
ttttgattgaaagaacCTAATTCAAAAAAGTGGCAGGCTGAAAAGATtga
tctacaatcagtgccataacatattggcacttttcgctaatttaccattt
tacgaaaattgaagttcgagcgagaatgtcaatttcgggccctcaacttg
atttcaacgattatttcgatctgggagggatttattggtttctaggctat
atttcaagccctactggaccatttttgaacttttgaatcctcacatccta
aggtatagtcttaagtctagcgttaaaactcagagttaaaactctaccct
tcgaacctactttagagcacttgcaaatcgattgtggtttcaaaacACCC
CGGTGGGTTTCCTTTTTGTGCCAAGTTTTTCGTCACTGATTGTAGAGAGA
GAGGTTTTGAACGAGCCCAAACATGGTTGAGGTGAGGCCTGTTGAAGTTA
TCATACTATCAAATGTTGAATGATTGGTAGAATGTTGTATTTCTAAGACA
GAGGGTTTCAATAATTTGCAGTTACCTTGAAATAACTTTAAATATATATC
TTTAAATTTCGTAATATTTGTAAATACTAAATGATTTTTTGAAtaggaaa
ataaaatgaaaaagatatacATAATATATCTGGataataaaaatatgttt
tgtataataaatctatgttttttaaattgtatgaataatcagaaaataaa
ttatatttgaaaaaaaataaata
Run BLAST on NCBI

protein sequence of TCONS_00055965-protein

>TCONS_00055965-protein ID=TCONS_00055965-protein|Name=TCONS_00055965-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp
MGSNKQGEMQKTVKVKIAKINNNNNNNAKKTKAPNPPKIKTVITTKTKVK
ETKTKETKVNIKNTPGSSKTTIKTTTKTGQSSGSTVKLPNISIPRIPTPT
VAYAQFKALKWTKWTKMVFAFLILLFFMQIVCTSTTSWVAFGSTQSHGLF
RVCKEESVGSGTTECSDYQHLADFQIQMQALMMVSIFMFLFCFVYLIFWM
KGRNLPLIVLAVLVEITALLIVVSASIFTDKHFCAVGRSKLGTFGWSYYL
AWATSLVAIVTGILVTKVS
Run BLAST on NCBI

transcript from alignment at scaffold_266:19302..21783-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055965 ID=TCONS_00055965|Name=TCONS_00055965|organism=Clytia hemisphaerica|type=transcript|length=2482bp|location=Sequence derived from alignment at scaffold_266:19302..21783- (Clytia hemisphaerica)
CAATTTTGGTTAAATGTTTTGGCATTATAAAGTCTGTGATTTATTTTTAT
TTTTGAGGTATAATTATTCAAGATCTGGAGTTTTGAAAAGGGACCAAGAA
AATGAATTAAAAAAATTATCTCATTGAGTGAAAAATCTCAGATATTTTTT
GGATTTTTGTTGCTGCCAATTTGAAAACTAATTGGTTCAAGGTTTGACGA
CATAAAAATCAAGCCGGTATAGTCAAAATGGGTTCAAATAAGCAAGGTGA
AATGCAGAAAACTGTCAAAGTGAAAATCGCAAAAATAAACAATAACAACA
ACAACAACGCTAAGAAAACAAAAGCACCCAACCCACCCAAAATAAAAACA
GTCATCACTACAAAAACCAAAGTCAAAGAAACGAAAACAAAGGAGACAAA
AGTCAATATAAAAAACACTCCAGGAAGCAGTAAAACCACCATAAAAACAA
CAACAAAAACTGGGCAGAGTTCAGGATCTACTGTAAAATTACCTAATATC
AGCATCCCAAGAATACCTACACCCACAGTTGCATATGCTCAATTTAAAGC
CTTGAAATGGACTAAATGGACCAAGATGGTTTTTGCCTTTCTTATTTTAT
TGTTTTTCATGCAAATAGTATGCACATCGACTACGAGTTGGGTTGCTTTT
GGATCAACACAATCTCATGGATTGTTTCGTGTTTGCAAAGAAGAAAGTGT
TGGATCAGGGACAACAGAATGCTCAGATTATCAACATTTGGCTGGTAAGT
TAAACACTCCCGTTTTATAGATCTGCTTGGAATAGTCATTTACCCACCGT
AAGGTCCCTACTGGCAGTGTCCAGTTAAAAAATGAACGTAACGTAACATA
CCTCTTTCCCTGGAATGATTGTTTATTATATAATTGTCATGGCTTTACAT
AAAGTAAAGGGTTTAGAAATCTTACAATATATATTGTTTTGTTTGAATGT
GGTCTAAAAGGGAGTGACATATTCTTCTATTCATTTTTCAGACTTCCAGA
TTCAAATGCAAGCATTAATGATGGTGTCAATCTTCATGTTTTTGTTTTGC
TTCGTTTACCTCATCTTCTGGATGAAAGGAAGAAATCTTCCACTGATCGT
TTTGGCTGTGCTGGTTGAGATTACAGGTACTTATTTGTCACGAGAATACT
CCCTTGTTTCGGACGCTCTTATTACAATTACATTACAGTTGACGCTCTCT
AATTCAAATAGCTATTCGAAACGGTCCATTATTCCATAACATTGAAAGTC
ACTTTAAACAAACTCTCAACTCTCTATCGATAGGCTCCGTTATTTGCTGA
ATATATAATTGCCCTTAAAATAGAATTAGAGTGTCAACAGTACATTGTCG
TTATGGTGACTAGATTGCTTGGTTTTGCGATTCTGTGCATATTTAGGAGA
AAATTGACTTCGACTTAACCTACTTCTTTTTTTTTCAGCCTTACTAATCG
TGGTCTCAGCTTCTATATTCACTGACAAACATTTCTGTGCGGTGGGACGC
TCTAAACTTGGAACATTTGGTTGGAGCTATTACCTAGCATGGGCTACAAG
TCTTGTTGCTATAGTTACTGGAATATTGGTCACCAAAGTAAGTTGATTGG
TGTACTGTAACAAGAAAGTTTGTGTATGGTAATGATATAGAGTAATGGTG
ATTCATAGTTGAGAGTGGAAAAATTCATTTTCTTTAAATTAATCTGCTGA
AATAGCAAACCAAAAAGACATTCCCTTTATTTATAAACGTTTCTTTCGGC
TGCCAGTAATTTTGATTGAAAGAACCTAATTCAAAAAAGTGGCAGGCTGA
AAAGATTGATCTACAATCAGTGCCATAACATATTGGCACTTTTCGCTAAT
TTACCATTTTACGAAAATTGAAGTTCGAGCGAGAATGTCAATTTCGGGCC
CTCAACTTGATTTCAACGATTATTTCGATCTGGGAGGGATTTATTGGTTT
CTAGGCTATATTTCAAGCCCTACTGGACCATTTTTGAACTTTTGAATCCT
CACATCCTAAGGTATAGTCTTAAGTCTAGCGTTAAAACTCAGAGTTAAAA
CTCTACCCTTCGAACCTACTTTAGAGCACTTGCAAATCGATTGTGGTTTC
AAAACACCCCGGTGGGTTTCCTTTTTGTGCCAAGTTTTTCGTCACTGATT
GTAGAGAGAGAGGTTTTGAACGAGCCCAAACATGGTTGAGGTGAGGCCTG
TTGAAGTTATCATACTATCAAATGTTGAATGATTGGTAGAATGTTGTATT
TCTAAGACAGAGGGTTTCAATAATTTGCAGTTACCTTGAAATAACTTTAA
ATATATATCTTTAAATTTCGTAATATTTGTAAATACTAAATGATTTTTTG
AATAGGAAAATAAAATGAAAAAGATATACATAATATATCTGGATAATAAA
AATATGTTTTGTATAATAAATCTATGTTTTTTAAATTGTATGAATAATCA
GAAAATAAATTATATTTGAAAAAAAATAAATA

Coding sequence (CDS) from alignment at scaffold_266:19302..21783-

>TCONS_00055965 ID=TCONS_00055965|Name=TCONS_00055965|organism=Clytia hemisphaerica|type=CDS|length=2430bp|location=Sequence derived from alignment at scaffold_266:19302..21783- (Clytia hemisphaerica)
CCTTACTAATCGTGGTCTCAGCTTCTATATTCACTGACAAACATTTCTGT
GCGGTGGGACGCTCTAAACTTGGAACATTTGGTTGGAGCTATTACCTAGC
ATGGGCTACAAGTCTTGTTGCTATAGTTACTGGAATATTGGTCACCAAAG
TAAGTTGAACTTCCAGATTCAAATGCAAGCATTAATGATGGTGTCAATCT
TCATGTTTTTGTTTTGCTTCGTTTACCTCATCTTCTGGATGAAAGGAAGA
AATCTTCCACTGATCGTTTTGGCTGTGCTGGTTGAGATTACAGATGGGTT
CAAATAAGCAAGGTGAAATGCAGAAAACTGTCAAAGTGAAAATCGCAAAA
ATAAACAATAACAACAACAACAACGCTAAGAAAACAAAAGCACCCAACCC
ACCCAAAATAAAAACAGTCATCACTACAAAAACCAAAGTCAAAGAAACGA
AAACAAAGGAGACAAAAGTCAATATAAAAAACACTCCAGGAAGCAGTAAA
ACCACCATAAAAACAACAACAAAAACTGGGCAGAGTTCAGGATCTACTGT
AAAATTACCTAATATCAGCATCCCAAGAATACCTACACCCACAGTTGCAT
ATGCTCAATTTAAAGCCTTGAAATGGACTAAATGGACCAAGATGGTTTTT
GCCTTTCTTATTTTATTGTTTTTCATGCAAATAGTATGCACATCGACTAC
GAGTTGGGTTGCTTTTGGATCAACACAATCTCATGGATTGTTTCGTGTTT
GCAAAGAAGAAAGTGTTGGATCAGGGACAACAGAATGCTCAGATTATCAA
CATTTGGCTGCCTTACTAATCGTGGTCTCAGCTTCTATATTCACTGACAA
ACATTTCTGTGCGGTGGGACGCTCTAAACTTGGAACATTTGGTTGGAGCT
ATTACCTAGCATGGGCTACAAGTCTTGTTGCTATAGTTACTGGAATATTG
GTCACCAAAGTAAGTTGAACTTCCAGATTCAAATGCAAGCATTAATGATG
GTGTCAATCTTCATGTTTTTGTTTTGCTTCGTTTACCTCATCTTCTGGAT
GAAAGGAAGAAATCTTCCACTGATCGTTTTGGCTGTGCTGGTTGAGATTA
CAGATGGGTTCAAATAAGCAAGGTGAAATGCAGAAAACTGTCAAAGTGAA
AATCGCAAAAATAAACAATAACAACAACAACAACGCTAAGAAAACAAAAG
CACCCAACCCACCCAAAATAAAAACAGTCATCACTACAAAAACCAAAGTC
AAAGAAACGAAAACAAAGGAGACAAAAGTCAATATAAAAAACACTCCAGG
AAGCAGTAAAACCACCATAAAAACAACAACAAAAACTGGGCAGAGTTCAG
GATCTACTGTAAAATTACCTAATATCAGCATCCCAAGAATACCTACACCC
ACAGTTGCATATGCTCAATTTAAAGCCTTGAAATGGACTAAATGGACCAA
GATGGTTTTTGCCTTTCTTATTTTATTGTTTTTCATGCAAATAGTATGCA
CATCGACTACGAGTTGGGTTGCTTTTGGATCAACACAATCTCATGGATTG
TTTCGTGTTTGCAAAGAAGAAAGTGTTGGATCAGGGACAACAGAATGCTC
AGATTATCAACATTTGGCTGCCTTACTAATCGTGGTCTCAGCTTCTATAT
TCACTGACAAACATTTCTGTGCGGTGGGACGCTCTAAACTTGGAACATTT
GGTTGGAGCTATTACCTAGCATGGGCTACAAGTCTTGTTGCTATAGTTAC
TGGAATATTGGTCACCAAAGTAAGTTGAACTTCCAGATTCAAATGCAAGC
ATTAATGATGGTGTCAATCTTCATGTTTTTGTTTTGCTTCGTTTACCTCA
TCTTCTGGATGAAAGGAAGAAATCTTCCACTGATCGTTTTGGCTGTGCTG
GTTGAGATTACAGATGGGTTCAAATAAGCAAGGTGAAATGCAGAAAACTG
TCAAAGTGAAAATCGCAAAAATAAACAATAACAACAACAACAACGCTAAG
AAAACAAAAGCACCCAACCCACCCAAAATAAAAACAGTCATCACTACAAA
AACCAAAGTCAAAGAAACGAAAACAAAGGAGACAAAAGTCAATATAAAAA
ACACTCCAGGAAGCAGTAAAACCACCATAAAAACAACAACAAAAACTGGG
CAGAGTTCAGGATCTACTGTAAAATTACCTAATATCAGCATCCCAAGAAT
ACCTACACCCACAGTTGCATATGCTCAATTTAAAGCCTTGAAATGGACTA
AATGGACCAAGATGGTTTTTGCCTTTCTTATTTTATTGTTTTTCATGCAA
ATAGTATGCACATCGACTACGAGTTGGGTTGCTTTTGGATCAACACAATC
TCATGGATTGTTTCGTGTTTGCAAAGAAGAAAGTGTTGGATCAGGGACAA
CAGAATGCTCAGATTATCAACATTTGGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035230XLOC_035230Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055965-proteinTCONS_00055965-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055965-exon-scaffold_266-1575043694:21040..21783TCONS_00055965-exon-scaffold_266-1575043694:21040..21783Clytia hemisphaericaexon
TCONS_00055965-exon-scaffold_266-1575043694:20658..20792TCONS_00055965-exon-scaffold_266-1575043694:20658..20792Clytia hemisphaericaexon
TCONS_00055965-exon-scaffold_266-1575043694:19302..20345TCONS_00055965-exon-scaffold_266-1575043694:19302..20345Clytia hemisphaericaexon
TCONS_00055965-exon-scaffold_266-1510915933:21040..21783TCONS_00055965-exon-scaffold_266-1510915933:21040..21783Clytia hemisphaericaexon
TCONS_00055965-exon-scaffold_266-1510915933:20658..20792TCONS_00055965-exon-scaffold_266-1510915933:20658..20792Clytia hemisphaericaexon
TCONS_00055965-exon-scaffold_266-1510915933:19302..20345TCONS_00055965-exon-scaffold_266-1510915933:19302..20345Clytia hemisphaericaexon
TCONS_00055965-exon-scaffold_266-1491911889:21040..21783TCONS_00055965-exon-scaffold_266-1491911889:21040..21783Clytia hemisphaericaexon
TCONS_00055965-exon-scaffold_266-1491911889:20658..20792TCONS_00055965-exon-scaffold_266-1491911889:20658..20792Clytia hemisphaericaexon
TCONS_00055965-exon-scaffold_266-1491911889:19302..20345TCONS_00055965-exon-scaffold_266-1491911889:19302..20345Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_266supercontigscaffold_266:19302..21783 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.347554	0.505474	0.939629	1.54231	0.172794	0.227221	0.244174	0	0	0.0907057	0	0.0649527	6.53007	5.41666	0.113407	0.0647604	1.97489	2.70206	17.3378	19.4603	5.97646	6.10054	1.58227	2.03173	3.23059	2.89931	0.0333466	0	0.204916	0.0153298
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004031PMP22/EMP/MP20/Claudin
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055965 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top