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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055870 ID=TCONS_00055870|Name=TCONS_00055870|organism=Clytia hemisphaerica|type=transcript|length=619bp
ccccccccccatactTGGATCTTTGCCCAAAAACCCGTTCCCCCATGAAT
CcaggggaggacactatgcaaTATTTTCTCGCACCTAGAAAAACTATTAG
AAAAATTTCCCCAAAGGTTATCACAGAACATTACCAAGAAAAAAACAAGA
CTTGACAAACACACAAGCAAACAACTGCTTTTTTTTACAGATGATGGTAT
TATGGTATGATAGCTACTACAAGATgatattttaaaggaaaattgcATAC
CTGATGAAGCTTCTGTTTGAGCTTCCGCTTGAGCTTCTGCTGCTTTCAAG
TTTTTCCGTTCAAGAGCTGAAAGTGAGaAATTCCACGGTACAATGTTTGG
ATTATTGGCATAAACAAGCAAAATCGACCACTTACTGGATTCTTAGGAGG
AGCTGACGATTTTATTTCTTTCACCCAATTTACGTATCTGTTAGTAGTGC
CTGATAATGGAAAAACGACAATTATTGTTTTTGTTCATGGAAAATTGCAA
ACTTTTaatcaaaagtttgatttttagagaaaggaatttcaaaatgagaa
aattcaAAGAGGCAGTTGCAATTAAGGAACACAAAACTAATttactaaat
aaaaaagaagaaattaaac Run BLAST on NCBI transcript from alignment at scaffold_264:62638..64264+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055870 ID=TCONS_00055870|Name=TCONS_00055870|organism=Clytia hemisphaerica|type=transcript|length=1627bp|location=Sequence derived from alignment at scaffold_264:62638..64264+ (Clytia hemisphaerica)
ccccccccccatactTGGATCTTTGCCCAAAAACCCGTTCCCCCATGAAT
CcaggggaggacactatgcaaTATTTTCTCGCACCTAGAAAAACTATTAG
AAAAATTTCCCCAAAGGTTATCACAGAACATTACCAAGAAAAAAACAAGA
CTTGACAAACACACAAGCAAACAACTGCTTTTTTTTACAGATGATGGTAT
TATGGTATGATAGCTACTACAAGATgatattttaaaggaaaattgcATAC
CTGATGAAGCTTCTGTTTGAGCTTCCGCTTGAGCTTCTGCTGCTTTCAAG
TTTTTCCGTTCAAGAGCTGAAAGTGAGGTAAGTGTGTgaatattatttca
aaaattcaatttacTCTGTTTTAATATGTGATTGATGTGCTCATAAATAA
CACCACCCCATTACAAATTTACAACAACCCCCTCATTTTATGAATTTGCA
AAAATGAGTCCCACACAAGGGTCATTTTTTAACCACACCCCCAACACCTC
GACTTTCGTGCGAAATCCCACAGAGATTAAAAGATCTTTTGTTTAGGGAa
gggtggaaatattttaactcgctgtttttgatcatatttttatatatgaa
aAGTGAGCATTGAGTGTACCTGAGTTAacgatatttttcattttagcatT
GATCTGATTTGCTTTAACACATGCTTCAGGGCATCTTCGATAAAATTTTA
GCTAAAAAGTGTACAATACGTTTAATCTTTGTCAGTCTGGTTCTTTTAGG
CCgtggaaaaaaaatccaaaaattccACTTGTTGAACATCCTTTTTAGGA
CAGGGTTTTTTGTACTCAAGATAAAGACCTCTGAGGACAAGATtgtattg
aaaatttaaaactgATTCATATCAGTCATTTTGATAATGGTGTCTTCGTT
GCTCACTggtcaacaaaaacaaacaggGTTCCCAGAGGTTTCCCTTCTGC
TTAGGGTGGGAGATAATCTGGGGTTGGCACTTAGGCAAGGTTTGGTacag
ggacgtgccgctggtcagggtaccctTTTCTTAAGGCTCTGAAAATGTCT
GACAGGATcccaaatttcaaagtttctaGAGGAGTCTTGACCCCTTATGT
AGAAAAACACTCCTCCCTCAAATGGTACACCTAGATTTCCTAGACCTTGA
GCTGTCAAGACACCATATCATTGACTTTTTTCGAAGAATCGACTAACTTT
TCTTATACAATTGAATAAAGCTCCATTCTTGATAATTTCAACAGCAGTCC
AGTTTTTCTCATCAACTTCATTCAAAAGTTTGATCAGTTTGGGATAGTTC
TGAAAGtgaattgtatatttttttaatttttacagaAATTCCACGGTACA
ATGTTTGGATTATTGGCATAAACAAGCAAAATCGACCACTTACTGGATTC
TTAGGAGGAGCTGACGATTTTATTTCTTTCACCCAATTTACGTATCTGTT
AGTAGTGCCTGATAATGGAAAAACGACAATTATTGTTTTTGTTCATGGAA
AATTGCAAACTTTTaatcaaaagtttgatttttagagaaaggaatttcaa
aatgagaaaattcaAAGAGGCAGTTGCAATTAAGGAACACAAAACTAATt
tactaaataaaaaagaagaaattaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055870-exon-scaffold_264-1491911889:62638..62964 | TCONS_00055870-exon-scaffold_264-1491911889:62638..62964 | Clytia hemisphaerica | exon |
| TCONS_00055870-exon-scaffold_264-1510915933:62638..62964 | TCONS_00055870-exon-scaffold_264-1510915933:62638..62964 | Clytia hemisphaerica | exon |
| TCONS_00055870-exon-scaffold_264-1575043694:62638..62964 | TCONS_00055870-exon-scaffold_264-1575043694:62638..62964 | Clytia hemisphaerica | exon |
| TCONS_00055870-exon-scaffold_264-1491911889:63973..64264 | TCONS_00055870-exon-scaffold_264-1491911889:63973..64264 | Clytia hemisphaerica | exon |
| TCONS_00055870-exon-scaffold_264-1510915933:63973..64264 | TCONS_00055870-exon-scaffold_264-1510915933:63973..64264 | Clytia hemisphaerica | exon |
| TCONS_00055870-exon-scaffold_264-1575043694:63973..64264 | TCONS_00055870-exon-scaffold_264-1575043694:63973..64264 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_264 | supercontig | scaffold_264:62638..64264 + |
Blast
The following BLAST results are available for this feature:
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