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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055869 ID=TCONS_00055869|Name=TCONS_00055869|organism=Clytia hemisphaerica|type=transcript|length=2065bp
actcgccaaaataagttcccgccaaaattaaattttttgttttcttgcct
aaagaagtGTTTGAAAAATTACCTATTTCAAATGAAACATCTTTTCTCTT
TGGAGTGGatgttttcgttttctttttcttggtaGGCTGAGCTGCTTTTG
GGATGGTTGGGATTGTTCTTGGGATGGTTGGTTTCGTTGTAGGTTTTTTC
TGTGTGACCGGACTTGTGTCACACTTTTTAATCCAAAATATGTTTCCAAG
CTATAAAAAGGTGAAAGGGAACAATTACCCAAGACCCCACAGAGAGAAAA
TCACACTTCTTATACAAAGAAAACCCAAATTTACGTTGGCATTTGCGTCA
GCAATAGCCGAATGCCGACGCGAATTAGAATGGCTGGGGTTCCCACTTAA
gggggggtcttcttacctAATGGAGGGTCTTCTTACCTAAtggggggggg
tcttgacccctctagaaactatgccCTTaatggcgttatttttgggctcg
tgcgTGGCGTGATTAAGGGCCGCGTTAAAAGGACCGGcgtaaaatgggcc
aaaatctttctatttttaCTTAGGCGGCATtaatgttttcactttttttt
cttgtttaaaGCAATCTAGGGCCAAATTTAGAACCCCCACTGGGGGGCTT
AAAGCGACCCCCAGACCCCCAGCTAAATCGCATTTGAAACTCAATATAAT
TATACAAAAACTGTAGTAgctcaaagtgcttgaaaaaatCCCTGATACCT
TCAGTTGATGGAAATTAGCCACCAAATTTTCTTGATGTTTTGGTAATTCA
ATCAGCGTTTTAGTATCGTATTGTGAATTCAAGTAGAGTTTGTACATATC
ATCTATTGAAGTAAATACAAAGAAATAATTGTTGGATGAATTTCTCAAAT
TTATTCATATTTGTGAAATTTACGTACTAAAGACTTATAGGAAATGCTGA
TTCATCAAAATATATATACACAAAATGTTTGGAACTTTATATGAAGCATA
ATTTAAGGAAGTTTCGTAAaagaccattcaaaaagtatgtacACTCAAAA
TACGTTATACGTAATTTTTGGAACTATGTACTtcacaaaaaattcaaact
acTATTCTTTAAATAAATATTTGAGTCTTACTTCAGTGTTGCAGCAAATA
TAAAAGTATggacaaaaatttaaattctttgtattttctaaGTTACCTGT
GGACTCAAGAACCAAGGCTTTTCCGACTTTCTTGGCTCTCACGTAAGCCC
TGTGAACGACATAAACTTTGTACCTGGAATTAAATGAGTCGACGTTTTTG
TCATAACTGTCATAACCTACTGCCCCCTATTTTGTCTTCTAAACTTCGGT
CTGAATAACAAAGGAATGTGGTTTTTTGACGCCTTGCCTCAAAATGTCTG
AAACCATTTTGATTACAATTTTCATTGAAGTATAACATACCCAACCCCAC
AAAAACTTTTGCTgactccaaattttgaaaaattaatttaattataccga
ccatatttttccaacattctgaacaacaacagaacaacaaatttaatCTG
TTTCGTGCCTCATTAAAACTCACCCTGTTTTTAAGTTGAAATTAGCCGGG
AggctttttgtctttttgaacGTGGTTGAAACCTCTGTTCCTCGTTTTTT
TTTCGCCAAGGTCTATTGTAGAGAACAAATTAAACAATAGTCGAACATGA
GCAAcacactgggctcaacttcagtatttttcAAACTCTTTGGAGGCCCA
TTTGTAGCAGTTGCGAAAAACCTGTCCCAGACCCCAAGAACCAAAGTTGA
GAATAAATCATGGATATTGCGATTTcatcatgttttttatggctgagaAT
CCCCCcactaattgattttttttccaccCACCCCGCTTATCCCGTCCATC
AGGTACACGAGAGTAGAACAGTTTTTGGGAAGCAAATAATGAATTGAATC
AGTTCTTACAGAAAGGTGGTTTCGATGATTGTTCATCGTCAGGTTGACGC
AGTCTTCAATTTCACGAATTGACATGTTATTCTTCATATCATTAACCACC
TAAGGATAATAAGCA Run BLAST on NCBI transcript from alignment at scaffold_264:59198..61520+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055869 ID=TCONS_00055869|Name=TCONS_00055869|organism=Clytia hemisphaerica|type=transcript|length=2323bp|location=Sequence derived from alignment at scaffold_264:59198..61520+ (Clytia hemisphaerica)
actcgccaaaataagttcccgccaaaattaaattttttgttttcttgcct
aaagaagtGTTTGAAAAATTACCTATTTCAAATGAAACATCTTTTCTCTT
TGGAGTGGatgttttcgttttctttttcttggtaGGCTGAGCTGCTTTTG
GGATGGTTGGGATTGTTCTTGGGATGGTTGGTTTCGTTGTAGGTTTTTTC
TGTGTGACCGGACTTGTGTCACACTTTTTAATCCAAAATATGTTTCCAAG
CTATAAAAAGGTGAAAGGGAACAATTACCCAAGACCCCACAGAGAGAAAA
TCACACTTCTTATACAAAGAAAACCCAAATTTACGTTGGCATTTGCGTCA
GCAATAGCCGAATGCCGACGCGAATTAGAATGGCTGGGGTTCCCACTTAA
gggggggtcttcttacctAATGGAGGGTCTTCTTACCTAAtggggggggg
tcttgacccctctagaaactatgccCTTaatggcgttatttttgggctcg
tgcgTGGCGTGATTAAGGGCCGCGTTAAAAGGACCGGcgtaaaatgggcc
aaaatctttctatttttaCTTAGGCGGCATtaatgttttcactttttttt
cttgtttaaaGCAATCTAGGGCCAAATTTAGAACCCCCACTGGGGGGCTT
AAAGCGACCCCCAGACCCCCAGCTAAATCGCATTTGAAACTCAATATAAT
TATACAAAAACTGTAGTAgctcaaagtgcttgaaaaaatCCCTGATACCT
TCAGTTGATGGAAATTAGCCACCAAATTTTCTTGATGTTTTGGTAATTCA
ATCAGCGTTTTAGTATCGTATTGTGAATTCAAGTAGAGTTTGTACATATC
ATCTATTGAAGTAAATACAAAGAAATAATTGTTGGATGAATTTCTCAAAT
TTATTCATATTTGTGAAATTTACGTACTAAAGACTTATAGGAAATGCTGA
TTCATCAAAATATATATACACAAAATGTTTGGAACTTTATATGAAGCATA
ATTTAAGGAAGTTTCGTAAaagaccattcaaaaagtatgtacACTCAAAA
TACGTTATACGTAATTTTTGGAACTATGTACTtcacaaaaaattcaaact
acTATTCTTTAAATAAATATTTGAGTCTTACTTCAGTGTTGCAGCAAATA
TAAAAGTATggacaaaaatttaaattctttgtattttctaaGTTACCTGT
GGACTCAAGAACCAAGGCTTTTCCGACTTTCTTGGCTCTCACGTAAGCCC
TGTGAACGACATAAACTTTGTACCTGGAATTAAATGAGTCGACGTTTTTG
TCATAACTGTCATAACCTACTGCCCCCTATTTTGTCTTCTAAACTTCGGT
CTGAATAACAAAGGAATGTGGTTTTTTGACGCCTTGCCTCAAAATGTCTG
AAACCATTTTGATTACAATTTTCATTGAAGTATAACATACCCAACCCCAC
AAAAACTTTTGCTgactccaaattttgaaaaattaatttaattataccga
ccatatttttccaacattctgaacaacaacagaacaacaaatttaatCTG
TTTCGTGCCTCATTAAAACTCACCCTGTTTTTAAGTTGAAATTAGCCGGG
AggctttttgtctttttgaacGTGGTTGAAACCTCTGTTCCTCGTTTTTT
TTTCGCCAAGGTCTATTGTAGAGAACAAATTAAACAATAGTCGAACATGA
GCAAcacactgggctcaacttcagtatttttcAAACTCTTTGGAGGCCCA
TTTGTAGCAGTTGCGAAAAACCTGTCCCAGACCCCAAGAACCAAAGTTGA
GAATAAATCATGGATATTGCGATTTcatcatgttttttatggctgagaAT
CCCCCcactaattgattttttttccaccCACCCCGCTTATCCCGTCCATC
AGGTACACGAGAGTAGAACAGTTTTTGGGAAGCAAATAATGAATTGAATC
AGTTCTTACAGAAAGGTGGTTTCGATGATTGTTCATCGTCAGGTTGACGC
AGTCTTCAATTTCACGAATAGACATGTTATTCTTCATATCATTAATCACC
TAAGGATAATAAGCAAATATTATAATTCTGAATTATAAGAAATAATACCC
TTGGAATAGTCTCTTATAAAATTGGTCTTTGGATAACTAGAAAGAATAAT
TTATATTTTACCTGgttatttcaaagtttgatttgttTATTGGAATTTTG
GACTGCCTAAGCAGTGACAcgtatgaaaaaaattgttctctGTAACGGTT
GGTAAACNGGTCTTCAATTTCACGAATTGACATGTTATTCTTCATATCAT
TAACCACCTAAGGATAATAAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055869-exon-scaffold_264-1491911889:59198..61198 | TCONS_00055869-exon-scaffold_264-1491911889:59198..61198 | Clytia hemisphaerica | exon |
| TCONS_00055869-exon-scaffold_264-1510915933:59198..61198 | TCONS_00055869-exon-scaffold_264-1510915933:59198..61198 | Clytia hemisphaerica | exon |
| TCONS_00055869-exon-scaffold_264-1575043694:59198..61198 | TCONS_00055869-exon-scaffold_264-1575043694:59198..61198 | Clytia hemisphaerica | exon |
| TCONS_00055869-exon-scaffold_264-1491911889:61457..61520 | TCONS_00055869-exon-scaffold_264-1491911889:61457..61520 | Clytia hemisphaerica | exon |
| TCONS_00055869-exon-scaffold_264-1510915933:61457..61520 | TCONS_00055869-exon-scaffold_264-1510915933:61457..61520 | Clytia hemisphaerica | exon |
| TCONS_00055869-exon-scaffold_264-1575043694:61457..61520 | TCONS_00055869-exon-scaffold_264-1575043694:61457..61520 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_264 | supercontig | scaffold_264:59198..61520 + |
Blast
The following BLAST results are available for this feature:
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