TCONS_00055854 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055854
Unique NameTCONS_00055854
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length139

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055854 ID=TCONS_00055854|Name=TCONS_00055854|organism=Clytia hemisphaerica|type=transcript|length=139bp
AAACAGACTTCTCAAGACcatgaatgtgatttttgttatcaaaattatga
atcgGTCAATGATATTGATAATTTGACGTGCTTCTTCCCAAACTCAGAGC
TCAAACATCAAACGACATTTCTTGAACTAAACTTGGGAA
Run BLAST on NCBI

transcript from alignment at scaffold_263:24376..24514

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055854 ID=TCONS_00055854|Name=TCONS_00055854|organism=Clytia hemisphaerica|type=transcript|length=139bp|location=Sequence derived from alignment at scaffold_263:24376..24514 (Clytia hemisphaerica)
TTCCCAAGTTTAGTTCAAGAAATGTCGTTTGATGTTTGAGCTCTGAGTTT
GGGAAGAAGCACGTCAAATTATCAATATCATTGACcgattcataattttg
ataacaaaaatcacattcatgGTCTTGAGAAGTCTGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035168XLOC_035168Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055854-exon-scaffold_263-1491911889:24376..24514TCONS_00055854-exon-scaffold_263-1491911889:24376..24514Clytia hemisphaericaexon
TCONS_00055854-exon-scaffold_263-1510915933:24376..24514TCONS_00055854-exon-scaffold_263-1510915933:24376..24514Clytia hemisphaericaexon
TCONS_00055854-exon-scaffold_263-1575043694:24376..24514TCONS_00055854-exon-scaffold_263-1575043694:24376..24514Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_263supercontigscaffold_263:24376..24514 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055854 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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