TCONS_00055699 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055699
Unique NameTCONS_00055699
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1142

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055699 ID=TCONS_00055699|Name=TCONS_00055699|organism=Clytia hemisphaerica|type=transcript|length=1142bp
AAAAAGATTCAAGCCTTCTGAAGGACTACCTGGAACACCTATTAAAGACT
GAAATGGCTGGCCTGGTGCGTCCTCCTGCTTTATGCAAAGGTTGTGTGAA
TATATCAACAGAAGAGACAAATACATCAAAATATGAGTCCGAGTGAACCA
CTCCACGACTTGAAGGGTCACATACGCAATCTATGGGATCTTTTACCAGA
TCATCTCCCTACAAATTTAAAGGAAGAGTTCGAAAAGGAGGTCGCTATTA
TTCTCGGACCAAAGGACAAATATCGTGGTGCTGACTTCCGTTTCTCTGCT
ATTGTTGTTCACCGTCAAATGAAACCTAAATTTCCATCCGAAGTTTCTGA
TTTAACTTATTCGCTGGTTGAGATTTCTAGGCTTGTTTACCAACCCGCAC
TGAGACGATctccaaaatcaattttgaggCTCTATACAATGTCTTTCTTG
CATAGTATGAGGTAACGTGGTTCAAATGCAAAGTTTTTGGTAAGTGAGTT
CGAAAGTCAAGACTGGCGTGCCTTCATACAACAAATCAGTGACTTTTTGA
AACACGATGAAGGAGTTTGGTGGAAAAGAGACGGCAATTATGTCGAATTT
TTGGATGGTGAAGATGCAGATGATTTTCGCGAAGAAGGTCCACGGTTGAA
GGATTTTACTGATACAATGTTTTATGAAcTTTACGAGCCTTTGAAGCAAG
ACTGGGAAGAGTGTAAAAGGAACGGCGTTGCTGCGAAACTATTGGATAGC
AGCTACATCGACGAAGACGATGATCCAGAAGTTGAGGAGCCGAGAAAAGA
AAGTCCTCCACAAGAACGAGAgaaagaacaagaagaagaacGCGTGGAAA
TCATTGAGGTTGCTGCAAATGTTGAGAGCGAGAGACCAGAATGTCCAGTA
AATACCATCAAACACGACCTGTCACACACCCTCAAATCGAGTACTTCAAA
AAGTCTTTACATCTTGTTCGGTATGTGTGACGACATCAAAAACTTTGATC
ATCACCGAATGAAGCACCGTACCGATAGAAATGAAAGATCTATGGAAATA
TGTCGGACAATCCAAAACAGATTAAGGCCTCAAATTGTTACCATCCATGA
AGAGCagaaaaaattggtgaaaaagtGGGAAGGTAAATTCTT
Run BLAST on NCBI

protein sequence of TCONS_00055699-protein

>TCONS_00055699-protein ID=TCONS_00055699-protein|Name=TCONS_00055699-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
MFYELYEPLKQDWEECKRNGVAAKLLDSSYIDEDDDPEVEEPRKESPPQE
REKEQEEERVEIIEVAANVESERPECPVNTIKHDLSHTLKSSTSKSLYIL
FGMCDDIKNFDHHRMKHRTDRNERSMEICRTIQNRLRPQIVTIHEEQKKL
VKKWEGKF
Run BLAST on NCBI

transcript from alignment at scaffold_257:2023..5823+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055699 ID=TCONS_00055699|Name=TCONS_00055699|organism=Clytia hemisphaerica|type=transcript|length=3801bp|location=Sequence derived from alignment at scaffold_257:2023..5823+ (Clytia hemisphaerica)
AAAAAGATTCAAGCCTTCTGAAGGACTACCTGGAACACCTATTAAAGACT
GAAATGGCTGGCCTGGTGCGTCCTCCTGCTTTATGCAAAGGTTGTGTGAA
TATATCAACAGAAGAGACAAATACATCAAAATATGAGGTTTGACATTTGA
CTTTACCAGACACTAACTTTACTTGACATAACATGACATCAATTGCTCCC
ATGAGCTAGCTATAAGACCTGGTAGCTTAATTTGGTAGAGCAAGGACACA
AGTCCTGACATGAGTTCGAATCTCATCCAGGACAAATTGACTGATTACAA
CTGACTAATATTAcaaaattttattctttttaatttgttatGAAGATTTT
CTAACATTaactaaaattacaaaattttattCTGTTTAATTTGTTATGAA
GATTTCTCTCTGTTTGAAAGTCATTATATGTATTTTACTGTATTCTATTT
AAGATTGATCACTTtctaaatggaaaaaaatggaACATGAATATCAATAA
CTTATACATTTACTCAATAAAGTTCCATTTTTTTCCATGTTTATCCCACA
ATGATAATGATTCTTTTCAGATTAGTCCGAGTGAACCACTCCACGACTTG
AAGGGTCACATACGCAATCTATGGGATCTTTTACCAGATCATCTCCCTAC
AAATTTAAAGGAAGAGTTCGAAAAGGAGGTCGCTATTATTCTCGGACCAA
AGGACAAATATCGTGGTGCTGACTTCCGTTTCTCTGCTATTGTTGTTCAC
CGTCAAATGAAACCTAAATTTCCATCCGAAGTTTCTGATTTAACTTATTC
GCTGGTTGAGATTTCTAGGCTTGTTTACCAACCCGCACTGAGACGATctc
caaaatcaattttgaggCTCTATACAATGTCTTTCTTGCATAGTATGAGG
TGTAAGCAAATCTTTGGTGAATATCCAAAATTATCTAAGTTTTATGGTGA
ATACTATCACTCAATCATCGATCATTTTGCCTTTGTTCAAAGAATTGTCG
CCCCTTCATCTCTCCACACGGAAAGTGAAGAGCGACTATTTGGAACGCTG
CGATTGATAGGTCTGGCCACATCAGGAAGATCAGTAGAATCAGTTCGTGA
TGTTGGTATAGTAAGGTAGACTTTTACGTTATTTCAGACAAGGCCAATCC
TTCAGTGGAAATTTAGAGTTTATCaatgtttttacgtttttaagtcttag
tattttctttgttggaagtgattttttaaaagtttagcCTAGAGAAATAA
AAATCTTTCAGAAAGTGGTTTTGATGTTATTTGTATTTATTAAGAAATAT
TAAGTGACATATGCATATGAATGTAAGTTTCGATtgtagattttgtaatt
ttagagTTCAAGCAGAGAAAGATTTTCAACAGAGAAATGGTAGAAGAAAG
TCTGGTGtagatagcaaaattagcaaaGCTGCTAAAGGCCTAGGTAAATT
GAACTATAAGTTTAGAATTCAATTATTCAGTAAAGACTGAAATACTTCAG
GGAAGTTATCTCGCCTTCTTTTAAGATAATTAGAACATAGCTATAATACA
AGATATCTTTTCTGTTGAATGGCTAAGctgttattattgttatttagAAC
GTGGTTCAAATGCAAAGTTTTTGGTAAGTGAGTTCGAAAGTCAAGACTGG
CGTGCCTTCATACAACAAATCAGTGACTTTTTGAAACACGATGAAGGAGT
TTGGTGGAAAAGAGACGGCAATTATGTCGAATTTTTGGATGGTGAAGATG
CAGATGATTTTCGCGAAGAAGGTCCACGGTTGAAGGATTTTACTGATACA
ATGTTTTATGAAGTAAGTTAACTTTATTTTTTGGCTCATTTTTTCCCTGG
CCAGTCAGAGGTGTGATTCTATTGGAAGTGATTATGAATCCCTTTTCTCT
TTTGTGTctaatttttgtgattttccctCTGAAAATGAAGGTCATAATCA
GTCATAAAAATGAAGGAGGTCTTTAAAGTGATATTGAGTTGAGAAATCtg
ataaattgctttttaaaagagtacaaaattctgattcaaattttattttt
ctttaatttagcTTTACGAGCCTTTGAAGCAAGACTGGGAAGAGTGTAAA
AGGAACGGCGTTGCTGCGAAACTATTGGATAGCAGCTACATCGACGAAGG
TATATTAGTTTCTTTTTCATAATCATAACTAAAACCATAAAGTGGGGAGG
ATCATAATTAAATGCTATGGGGTGATTCATTTTTctctaataaaaatttc
taataaaATGGAAAAGATATTAAACCTGCATATCCACCACTCATTCACAT
CTATAACATTTCATTTTCTAAGACGATGATCCAGAAGTTGAGGAGCCAAG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATCTAAAAACGATG
CATGGTTTCCATGGTGCTCAACTTTGAGATCTAGTTCTTTAGGGTAAATC
TGTTTGTAGCAATTATGAAACTCATCTCTGTCATCTCTGTCATTTTATAT
ATAAACCTGCATATCCACCACTCATTCACACCTATAACATTTCATTTTCT
AAGACGATGATCCAGAAGTTGAGGAGCCGAGAAAAGAAAGTCCTCCACAA
GAACGAGAgaaagaacaagaagaagaacGCGTGGAAATCATTGAGGTTGC
TGCAAATGTTGAGAGCGAGAGACCAGAATGTCCAGGTAAATACACCTTTT
ACGGTTAGCTGCTTtctataaaaagtcaccaaaatttcgagtaaacaaat
catctcattggctaaaagcaaaaacagGTGTATTGTATGATGTGTACAAC
TATAGTTAACTTAAGATTACTTCTGTTTAAAAGTTATTTAATGCTAAAAA
TATCGAGTTAACGATTATTTTTGCaatgttttctcaaaaatcattttatt
ctttCAGTAAATACCATCAAACACGACCTGTCACACACCCTCAAATCGAG
TACTTCAAAAAGTCTTTACATCTTGTTCGGTATGTGTGACGACATCAAAA
ACTTTGATCATCACCGAATGAAGCACCGTACCGATAGAAATGAAAGATCT
ATGGAAATATGTCGGACAATCCAAAACAGATTAAGGCCTCAAATTGTTAC
CATCCATGAAGAGCagaaaaaattggtgaaaaagtGGGAAGGTAAATTCT
T

Coding sequence (CDS) from alignment at scaffold_257:2023..5823+

>TCONS_00055699 ID=TCONS_00055699|Name=TCONS_00055699|organism=Clytia hemisphaerica|type=CDS|length=1896bp|location=Sequence derived from alignment at scaffold_257:2023..5823+ (Clytia hemisphaerica)
ATGTTTTATGAAcTTTACGAGCCTTTGAAGCAAGACTGGGAAGAGTGTAA
AAGGAACGGCGTTGCTGCGAAACTATTGGATAGCAGCTACATCGACGAAG
ACGATGATCCAGAAGTTGAGGAGCCGAGAAAAGAAAGTCCTCCACAAGAA
CGAGAgaaagaacaagaagaagaacGCGTGGAAATCATTGAGGTTGCTGC
AAATGTTGAGAGCGAGAGACCAGAATGTCCAGTAAATACCATCAAACACG
ACCTGTCACACACCCTCAAATCGAGTACTTCAAAAAGTCTTTACATCTTG
TTCGGTATGTGTGACGACATCAAAAACTTTGATCATCACCGAATGAAGCA
CCGTACCGATAGAAATGAAAGATCTATGGAAATATGTCGGACAATCCAAA
ACAGATTAAGGCCTCAAATTGTTACCATCCATGAAGAGCagaaaaaattg
gtgaaaaagtGGGAAGGTAAATTCATGTTTTATGAAcTTTACGAGCCTTT
GAAGCAAGACTGGGAAGAGTGTAAAAGGAACGGCGTTGCTGCGAAACTAT
TGGATAGCAGCTACATCGACGAAGACGATGATCCAGAAGTTGAGGAGCCG
AGAAAAGAAAGTCCTCCACAAGAACGAGAgaaagaacaagaagaagaacG
CGTGGAAATCATTGAGGTTGCTGCAAATGTTGAGAGCGAGAGACCAGAAT
GTCCAGTAAATACCATCAAACACGACCTGTCACACACCCTCAAATCGAGT
ACTTCAAAAAGTCTTTACATCTTGTTCGGTATGTGTGACGACATCAAAAA
CTTTGATCATCACCGAATGAAGCACCGTACCGATAGAAATGAAAGATCTA
TGGAAATATGTCGGACAATCCAAAACAGATTAAGGCCTCAAATTGTTACC
ATCCATGAAGAGCagaaaaaattggtgaaaaagtGGGAAGGTAAATTCAT
GTTTTATGAAcTTTACGAGCCTTTGAAGCAAGACTGGGAAGAGTGTAAAA
GGAACGGCGTTGCTGCGAAACTATTGGATAGCAGCTACATCGACGAAGAC
GATGATCCAGAAGTTGAGGAGCCGAGAAAAGAAAGTCCTCCACAAGAACG
AGAgaaagaacaagaagaagaacGCGTGGAAATCATTGAGGTTGCTGCAA
ATGTTGAGAGCGAGAGACCAGAATGTCCAGTAAATACCATCAAACACGAC
CTGTCACACACCCTCAAATCGAGTACTTCAAAAAGTCTTTACATCTTGTT
CGGTATGTGTGACGACATCAAAAACTTTGATCATCACCGAATGAAGCACC
GTACCGATAGAAATGAAAGATCTATGGAAATATGTCGGACAATCCAAAAC
AGATTAAGGCCTCAAATTGTTACCATCCATGAAGAGCagaaaaaattggt
gaaaaagtGGGAAGGTAAATTCATGTTTTATGAAcTTTACGAGCCTTTGA
AGCAAGACTGGGAAGAGTGTAAAAGGAACGGCGTTGCTGCGAAACTATTG
GATAGCAGCTACATCGACGAAGACGATGATCCAGAAGTTGAGGAGCCGAG
AAAAGAAAGTCCTCCACAAGAACGAGAgaaagaacaagaagaagaacGCG
TGGAAATCATTGAGGTTGCTGCAAATGTTGAGAGCGAGAGACCAGAATGT
CCAGTAAATACCATCAAACACGACCTGTCACACACCCTCAAATCGAGTAC
TTCAAAAAGTCTTTACATCTTGTTCGGTATGTGTGACGACATCAAAAACT
TTGATCATCACCGAATGAAGCACCGTACCGATAGAAATGAAAGATCTATG
GAAATATGTCGGACAATCCAAAACAGATTAAGGCCTCAAATTGTTACCAT
CCATGAAGAGCagaaaaaattggtgaaaaagtGGGAAGGTAAATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035053XLOC_035053Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055699-exon-scaffold_257-1491911889:2023..2159TCONS_00055699-exon-scaffold_257-1491911889:2023..2159Clytia hemisphaericaexon
TCONS_00055699-exon-scaffold_257-1510915933:2023..2159TCONS_00055699-exon-scaffold_257-1510915933:2023..2159Clytia hemisphaericaexon
TCONS_00055699-exon-scaffold_257-1575043694:2023..2159TCONS_00055699-exon-scaffold_257-1575043694:2023..2159Clytia hemisphaericaexon
TCONS_00055699-exon-scaffold_257-1491911889:2598..2923TCONS_00055699-exon-scaffold_257-1491911889:2598..2923Clytia hemisphaericaexon
TCONS_00055699-exon-scaffold_257-1510915933:2598..2923TCONS_00055699-exon-scaffold_257-1510915933:2598..2923Clytia hemisphaericaexon
TCONS_00055699-exon-scaffold_257-1575043694:2598..2923TCONS_00055699-exon-scaffold_257-1575043694:2598..2923Clytia hemisphaericaexon
TCONS_00055699-exon-scaffold_257-1491911889:3620..3834TCONS_00055699-exon-scaffold_257-1491911889:3620..3834Clytia hemisphaericaexon
TCONS_00055699-exon-scaffold_257-1510915933:3620..3834TCONS_00055699-exon-scaffold_257-1510915933:3620..3834Clytia hemisphaericaexon
TCONS_00055699-exon-scaffold_257-1575043694:3620..3834TCONS_00055699-exon-scaffold_257-1575043694:3620..3834Clytia hemisphaericaexon
TCONS_00055699-exon-scaffold_257-1491911889:4084..4171TCONS_00055699-exon-scaffold_257-1491911889:4084..4171Clytia hemisphaericaexon
TCONS_00055699-exon-scaffold_257-1510915933:4084..4171TCONS_00055699-exon-scaffold_257-1510915933:4084..4171Clytia hemisphaericaexon
TCONS_00055699-exon-scaffold_257-1575043694:4084..4171TCONS_00055699-exon-scaffold_257-1575043694:4084..4171Clytia hemisphaericaexon
TCONS_00055699-exon-scaffold_257-1491911889:5226..5357TCONS_00055699-exon-scaffold_257-1491911889:5226..5357Clytia hemisphaericaexon
TCONS_00055699-exon-scaffold_257-1510915933:5226..5357TCONS_00055699-exon-scaffold_257-1510915933:5226..5357Clytia hemisphaericaexon
TCONS_00055699-exon-scaffold_257-1575043694:5226..5357TCONS_00055699-exon-scaffold_257-1575043694:5226..5357Clytia hemisphaericaexon
TCONS_00055699-exon-scaffold_257-1491911889:5580..5823TCONS_00055699-exon-scaffold_257-1491911889:5580..5823Clytia hemisphaericaexon
TCONS_00055699-exon-scaffold_257-1510915933:5580..5823TCONS_00055699-exon-scaffold_257-1510915933:5580..5823Clytia hemisphaericaexon
TCONS_00055699-exon-scaffold_257-1575043694:5580..5823TCONS_00055699-exon-scaffold_257-1575043694:5580..5823Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055699-proteinTCONS_00055699-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_257supercontigscaffold_257:2023..5823 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0845224	0.114371	0	0	0.186386	0.0999173	0.335317	0.359035	0.173939	0.0733423	0.113582	0.202573	0.309393	0.170581	0.309999	0.352089	1.0899	0.505487	0.55154	0.466664	0.305919	0.0067328	0.236793	0.0839467	0.368381	0.409921	0.92508	0.462152	0.229649	0.143718
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055699 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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