TCONS_00055462 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055462
Unique NameTCONS_00055462
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2093

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055462 ID=TCONS_00055462|Name=TCONS_00055462|organism=Clytia hemisphaerica|type=transcript|length=2093bp
AAAATTTCTATAATCACACATGCTAAAAGTCCCCTATTTATTCTTTAGAG
ATATGACtaaaacatgtatttttaaaaatctatatGCATCATTATTACCG
AAACAAACGAAACAAATCTGTCAATTCAGTACAGCAACATCAAGAAGATA
TAGCAAGAAAAATGCTGACACAAAGTTGATAGAAACTTCTGTCCGATATA
ATGGCGTCCGAATTCAAATGCCACCAAATAAAGAATGGTCAAATGAACAA
TTCGAATCCGAATTACTGAGGTTATCAGAAGGTTGGAGAGAGCGGGGTGC
TCGTAGTGCATTCCTTGAAATTCCCATTCAAATGAGTCACGTGATACCAG
TGGCCTCAAAGTATGGCTTTCAGTACCACCATGCACGTGGGCAGCAAGCA
GTGTTATGCAAATGGTTAGTTGagaatgaagaaaataaaatcCCAAACTT
TTCAAATCACACAGTAGGAGTGGCAGGGGCGTGTTATCGTGAAGATTCAA
ACGAGCTACTAGTCGTCCGTGACAAAGGAAAGTTTTCCCATTGGTGGAAA
TTCCCTGGTGGATATTCAGATTTAGGAGAATATATAGGTGAAACCGCAAC
GCGTGAAGTGTTCGAAGAAACTGGTGTACGATCAGAATTCAAATCGATTT
TGAGCTTCCGACAACACCACGGTGTTTTTTACGACCAATCCGATCTCTAC
TACATATGTCGATTGAACCCGTTAACATACGAACTTTCACCGTGTCCTCA
CGAAATCGAAGATTGTGCATGGAAAAATATCAACGAACTTTTAAACGTGG
ATAACACAACACCTTTCGTCAAAATGATTTGCCGTTTAATGCAACATGGA
CAAGAAGTCGGTTTCAATGAGGTCGATATCAGTGAGCATGATTTAGAGAA
CTGGGCAAGACCTGGTAATCGAATGAAAATCTTTCACCGGAATATCGAAT
CGTACCATGATTAAATTAAGTATTTGAACATGAGTATTTCATATTCATTT
ACCATTCATACAAAGCCGGATTGTTGGATTGTTGATAAAAACAGAATAAA
AGACGTATGATTTAAATCTAAGATTTGAGAATCTCCAAATGAAATTCAGA
TTTTACATTGGTCTTGACTCAATGCTATGCTGTTCACCCATCATTTCAGT
TTTTTCATTCAGAATTTCATTCCCTCCTCGTAATAGCCTAGTTTTGATGT
TGCATCTCGATCATGTATTGTTGCAATGCTCTCGCTTGTAATGTATAGTT
ACCATTGATAAGGCCGTTAGACTTGGTTGCAATTTTGCCAAACTTCCTAA
ACTGTAAGAATGTTCTGAAAAGACTTAATATTTTAAGGCCTTCTTATTCT
TCAACCACTCTGTCATCTGATAGGGTTACTGTTTATCATCCTGTCGAGGA
ACTCCATTTGACTTTGGATGGCTTCGGtcctgatttttgccaatttatcG
AAAATCTTAATTTCTGCACCAAGAATTACACCAAATAAATAGCAGGTCGT
TAGGTAACTTTGCTACTAATTTTATCATTAGTCTCGATAGAACAGTCAAT
GGTACTctcataaatttttcaaaaattcgtGTTACTGGTACAAGTACACA
CACACATTTcgtaaactttttgaaaacttttgattcTCCGGATGGATTGG
TGTTTACCAATGCGCATCCTTCAAGCTTGTCTTGATCATGTAGTCTACCT
GATCCAACAGGTCTGACACATTCTTAATCCCATCCAATTTGCATgtagat
ttttttgtaaaatattttgatcaaaattataATAGAATATGTTttataat
attatattttatttttaatttcgccttagcgaaagtattacgataggcat
gGTGTGATATCggacgaaaatttagaaaacgaaagtacttgatacggtgg
acaaactcactaaaatcaatttacatattacacgctcgtataaccacgga
agatcttcgcaggttttctttggattacgtcattataTTTTTGCGtctct
ttagcttcacagttttgatttttctttattttcttataagcatatacttt
ataagaatcaaatcaataactcttgatagacggtgacatacct
Run BLAST on NCBI

protein sequence of TCONS_00055462-protein

>TCONS_00055462-protein ID=TCONS_00055462-protein|Name=TCONS_00055462-protein|organism=Clytia hemisphaerica|type=polypeptide|length=314bp
MLKVPYLFFRDMTKTCIFKNLYASLLPKQTKQICQFSTATSRRYSKKNAD
TKLIETSVRYNGVRIQMPPNKEWSNEQFESELLRLSEGWRERGARSAFLE
IPIQMSHVIPVASKYGFQYHHARGQQAVLCKWLVENEENKIPNFSNHTVG
VAGACYREDSNELLVVRDKGKFSHWWKFPGGYSDLGEYIGETATREVFEE
TGVRSEFKSILSFRQHHGVFYDQSDLYYICRLNPLTYELSPCPHEIEDCA
WKNINELLNVDNTTPFVKMICRLMQHGQEVGFNEVDISEHDLENWARPGN
RMKIFHRNIESYHD
Run BLAST on NCBI

transcript from alignment at scaffold_253:1285650..1289407+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055462 ID=TCONS_00055462|Name=TCONS_00055462|organism=Clytia hemisphaerica|type=transcript|length=3758bp|location=Sequence derived from alignment at scaffold_253:1285650..1289407+ (Clytia hemisphaerica)
AAAATTTCTATAATCACACATGCTAAAAGTCCCCTATTTATTCTTTAGAG
ATATGACtaaaacatgtatttttaaaaatctatatGCATCATTATTACCG
AAACAAACGAAACAAATCTGTCAATTCAGTACAGCAACATCAAGAAGATA
TAGCAAGAAAAATGCTGACACAAAGTTGATAGAAACTTCTGTCCGATATA
ATGGCGTCCGAATTCAAATGCCACCAAATAAAGAATGGTCAAATGAACAA
TTCGAATCCGAATTACTGAGTAAGTGAGATTTTGGTTGAGACTAAATTAT
GTATATTCACTcaagagaaaaagaaattgagaaattCACTGGGCAGtctt
gaaaccacaatcgatttgtaagtgctctaaattaggttcgaagattagag
ttttaactctgagttttaacgctagacttaatacttaggatctgaggatc
caaaagctcaaaaatagtccaataaggctcaggaTATAGCCTGAAAgact
gccaacccctcccaaattgaaatattcgattgaacaggggggggtcagaa
ggtggcatgtatcctggggtgggtgggtgtttgagaaaaaaatttgtcat
gtactacctgtgtactataattggggTGTTGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGATtgaattaaagagatagcccaaaatctcgccaga
actttaaatcttgaaaaacgttaaaataaccggaattctcaaaatatatt
ttctgaaaaggGCTCGGCAATAAACATGTTAGAATATCGCAAATTTTCGT
TCCAGGGTTATCAGAAGGTTGGAGAGAGCGGGGTGCTCGTAGTGCATTCC
TTGAAATTCCCATTCAAATGAGTCACGTGATACCAGTGGCCTCAAAGTAT
GGCTTTCAGTACCACCATGCACGTGGGCAGCAAGCAGTGTTATGCAAATG
GTTAGTTGagaatgaagaaaataaaatcCCAAACTTTTCAAATCACACAG
TAGGAGTGGCAGGTAGGCTAAAATTATAGGTTCTTGATTTACTGCGTGAA
AAATGACAGATACAATCTGAGCCACGCATACTTCAAACAAAAGTCTATCA
CTCTTCTCAacgaaaaatttcatttaagtAAGATTCTTTTTGCATTTATT
TAACACGGTTACTTGATACTCAACTTAAACAACAACTAGAATATGAACTG
ATGATTCTGTCTATCTACGTCAAAAAGATCAGCATTTTATTTAACCTTGC
TCTTTCTTGTTTGTATTGATACCTGATAATTTTTCTGGTAGGGGCGTGTT
ATCGTGAAGATTCAAACGAGCTACTAGTCGTCCGTGACAAAGGAAAGGTA
AAGACAATTGTACTTTCGACCAACTACAACTAAGAAGCCTAGATCTGCTC
TAAAAGATGTCACCGTCATATTTTGGGTGGATTTGCctccctttaaaaaa
atttcaaaacatctcaaaaaatattttgctcattCTGTCTAGCTCGTCCA
ATTACGTCCGGAAATGTGACAGCTTGCCCTATGCACCCTACCATACCGTT
TAGATTGATTTTTTGATTGACCCTTTTTCTCATAGTTTTCCCATTGGTGG
AAATTCCCTGGTGGATATTCAGATTTAGGAGAATATATAGGTAAGTATCT
GACTAATATTTAAcctgatttaaaatttaaaattgctaGAATTTGTCATA
GataaatagcccaaatcacgcatcaggTCTCAAATGTTTGTCCTATCAcg
ctatcacacaagaaaaaaggCCAAATAATGTCATAACAGCCTGTTAgaag
aaaaccgcttttttacgcagtttaacaaataaaaaatttatggTTGGCGA
AAAGTACTGTCTAACCATCACGCAAGTTGGTAGGGGGGGACTCATTCTAG
AAATATGAACTATTATTACTCGGTTTTNTGAAAGTACTGTCTATTCATCA
CGCAAGTTGGTAGGGGGGACTCATTCTAGAAATATGAACTATTATTACTC
AGTTTTGTTTCTGTacatacatttttataagcGCTGATCGACTCTTTTTC
ATAACTATTTGATAGGTGAAACCGCAACGCGTGAAGTGTTCGAAGAAACT
GGTGTACGATCAGGTAATAATGTATTAATTATGTTAAACATTACCAAATC
CATGGAAAAAGCTGTAAATACTTTCGAAACCCATTCTCAGTCTTAATCAA
CAAGAAATAAGATAATTTTAATTCGTCTTATTTTCGCAGAATTCAAATCG
ATTTTGAGCTTCCGACAACACCACGGTGTTTTTTACGACCAATCCGATCT
CTACTACATATGTCGATTGAACCCGTTAACATACGAACTTTCACCGTGTC
CTCACGAAATCGAAGATTGTGCATGGAAAAATATCAACGAACTTTTAAAC
GTGGATAACACAACACCTTTCGTCAAAATGATTTGCCGTTTAATGCAACA
TGGACAAGAAGTCGGTTTCAATGAGGTCGATATCAGTGAGCATGATTTAG
AGAACTGGGCAAGACCTGGTAATCGAATGAAAATCTTTCACCGGAATATC
GAATCGTACCATGATTAAATTAAGTATTTGAACATGAGTATTTCATATTC
ATTTNGATATCGAATCGCACCATGATTAAATTAAGTATTTGAACATGAGT
ATTTCATATTCATTTACCATTCATACAAAGCCGGATTGTTGGATTGTTGA
TAAAAACAGAATAAAAGACGTATGATTTAAATCTAAGATTTGAGAATCTC
CAAATGAAATTCAGATTTTACATTGGTCTTGACTCAATGCTATGCTGTTC
ACCCATCATTTCAGTTTTTTCATTCAGAATTTCATTCCCTCCTCGTAATA
GCCTAGTTTTGATGTTGCATCTCGATCATGTATTGTTGCAATGCTCTCGC
TTGTAATGTATAGTTACCATTGATAAGGCCGTTAGACTTGGTTGCAATTT
TGCCAAACTTCCTAAACTGTAAGAATGTTCTGAAAAGACTTAATATTTTA
AGGCCTTCTTATTCTTCAACCACTCTGTCATCTGATAGGGTTACTGTTTA
TCATCCTGTCGAGGAACTCCATTTGACTTTGGATGGCTTCGGtcctgatt
tttgccaatttatcGAAAATCTTAATTTCTGCACCAAGAATTACACCAAA
TAAATAGCAGGTCGTTAGGTAACTTTGCTACTAATTTTATCATTAGTCTC
GATAGAACAGTCAATGGTACTctcataaatttttcaaaaattcgtGTTAC
TGGTACAAGTACACACACACATTTcgtaaactttttgaaaacttttgatt
cTCCGGATGGATTGGTGTTTACCAATGCGCATCCTTCAAGCTTGTCTTGA
TCATGTAGTCTACCTGATCCAACAGGTCTGACACATTCTTAATCCCATCC
AATTTGCATgtagatttttttgtaaaatattttgatcaaaattataATAG
AATATGTTttataatattatattttatttttaatttcgccttagcgaaag
tattacgataggcatgGTGTGATATCggacgaaaatttagaaaacgaaag
tacttgatacggtggacaaactcactaaaatcaatttacatattacacgc
tcgtataaccacggaagatcttcgcaggttttctttggattacgtcatta
taTTTTTGCGtctctttagcttcacagttttgatttttctttattttctt
ataagcatatactttataagaatcaaatcaataactcttgatagacggtg
acatacct

Coding sequence (CDS) from alignment at scaffold_253:1285650..1289407+

>TCONS_00055462 ID=TCONS_00055462|Name=TCONS_00055462|organism=Clytia hemisphaerica|type=CDS|length=5670bp|location=Sequence derived from alignment at scaffold_253:1285650..1289407+ (Clytia hemisphaerica)
ATGCTAAAAGTCCCCTATTTATTCTTTAGAGATATGACtaaaacatgtat
ttttaaaaatctatatGCATCATTATTACCGAAACAAACGAAACAAATCT
GTCAATTCAGTACAGCAACATCAAGAAGATATAGCAAGAAAAATGCTGAC
ACAAAGTTGATAGAAACTTCTGTCCGATATAATGGCGTCCGAATTCAAAT
GCCACCAAATAAAGAATGGTCAAATGAACAATTCGAATCCGAATTACTGA
GGTTATCAGAAGGTTGGAGAGAGCGGGGTGCTCGTAGTGCATTCCTTGAA
ATTCCCATTCAAATGAGTCACGTGATACCAGTGGCCTCAAAGTATGGCTT
TCAGTACCACCATGCACGTGGGCAGCAAGCAGTGTTATGCAAATGGTTAG
TTGagaatgaagaaaataaaatcCCAAACTTTTCAAATCACACAGTAGGA
GTGGCAGGGGCGTGTTATCGTGAAGATTCAAACGAGCTACTAGTCGTCCG
TGACAAAGGAAAGTTTTCCCATTGGTGGAAATTCCCTGGTGGATATTCAG
ATTTAGGAGAATATATAGGTGAAACCGCAACGCGTGAAGTGTTCGAAGAA
ACTGGTGTACGATCAGAATTCAAATCGATTTTGAGCTTCCGACAACACCA
CGGTGTTTTTTACGACCAATCCGATCTCTACTACATATGTCGATTGAACC
CGTTAACATACGAACTTTCACCGTGTCCTCACGAAATCGAAGATTGTGCA
TGGAAAAATATCAACGAACTTTTAAACGTGGATAACACAACACCTTTCGT
CAAAATGATTTGCCGTTTAATGCAACATGGACAAGAAGTCGGTTTCAATG
AGGTCGATATCAGTGAGCATGATTTAGAGAACTGGGCAAGACCTGGTAAT
CGAATGAAAATCTTTCACCGGAATATCGAATCGTACCATGATTAAATGCT
AAAAGTCCCCTATTTATTCTTTAGAGATATGACtaaaacatgtattttta
aaaatctatatGCATCATTATTACCGAAACAAACGAAACAAATCTGTCAA
TTCAGTACAGCAACATCAAGAAGATATAGCAAGAAAAATGCTGACACAAA
GTTGATAGAAACTTCTGTCCGATATAATGGCGTCCGAATTCAAATGCCAC
CAAATAAAGAATGGTCAAATGAACAATTCGAATCCGAATTACTGAGGTTA
TCAGAAGGTTGGAGAGAGCGGGGTGCTCGTAGTGCATTCCTTGAAATTCC
CATTCAAATGAGTCACGTGATACCAGTGGCCTCAAAGTATGGCTTTCAGT
ACCACCATGCACGTGGGCAGCAAGCAGTGTTATGCAAATGGTTAGTTGag
aatgaagaaaataaaatcCCAAACTTTTCAAATCACACAGTAGGAGTGGC
AGGGGCGTGTTATCGTGAAGATTCAAACGAGCTACTAGTCGTCCGTGACA
AAGGAAAGTTTTCCCATTGGTGGAAATTCCCTGGTGGATATTCAGATTTA
GGAGAATATATAGGTGAAACCGCAACGCGTGAAGTGTTCGAAGAAACTGG
TGTACGATCAGAATTCAAATCGATTTTGAGCTTCCGACAACACCACGGTG
TTTTTTACGACCAATCCGATCTCTACTACATATGTCGATTGAACCCGTTA
ACATACGAACTTTCACCGTGTCCTCACGAAATCGAAGATTGTGCATGGAA
AAATATCAACGAACTTTTAAACGTGGATAACACAACACCTTTCGTCAAAA
TGATTTGCCGTTTAATGCAACATGGACAAGAAGTCGGTTTCAATGAGGTC
GATATCAGTGAGCATGATTTAGAGAACTGGGCAAGACCTGGTAATCGAAT
GAAAATCTTTCACCGGAATATCGAATCGTACCATGATTAAATGCTAAAAG
TCCCCTATTTATTCTTTAGAGATATGACtaaaacatgtatttttaaaaat
ctatatGCATCATTATTACCGAAACAAACGAAACAAATCTGTCAATTCAG
TACAGCAACATCAAGAAGATATAGCAAGAAAAATGCTGACACAAAGTTGA
TAGAAACTTCTGTCCGATATAATGGCGTCCGAATTCAAATGCCACCAAAT
AAAGAATGGTCAAATGAACAATTCGAATCCGAATTACTGAGGTTATCAGA
AGGTTGGAGAGAGCGGGGTGCTCGTAGTGCATTCCTTGAAATTCCCATTC
AAATGAGTCACGTGATACCAGTGGCCTCAAAGTATGGCTTTCAGTACCAC
CATGCACGTGGGCAGCAAGCAGTGTTATGCAAATGGTTAGTTGagaatga
agaaaataaaatcCCAAACTTTTCAAATCACACAGTAGGAGTGGCAGGGG
CGTGTTATCGTGAAGATTCAAACGAGCTACTAGTCGTCCGTGACAAAGGA
AAGTTTTCCCATTGGTGGAAATTCCCTGGTGGATATTCAGATTTAGGAGA
ATATATAGGTGAAACCGCAACGCGTGAAGTGTTCGAAGAAACTGGTGTAC
GATCAGAATTCAAATCGATTTTGAGCTTCCGACAACACCACGGTGTTTTT
TACGACCAATCCGATCTCTACTACATATGTCGATTGAACCCGTTAACATA
CGAACTTTCACCGTGTCCTCACGAAATCGAAGATTGTGCATGGAAAAATA
TCAACGAACTTTTAAACGTGGATAACACAACACCTTTCGTCAAAATGATT
TGCCGTTTAATGCAACATGGACAAGAAGTCGGTTTCAATGAGGTCGATAT
CAGTGAGCATGATTTAGAGAACTGGGCAAGACCTGGTAATCGAATGAAAA
TCTTTCACCGGAATATCGAATCGTACCATGATTAAATGCTAAAAGTCCCC
TATTTATTCTTTAGAGATATGACtaaaacatgtatttttaaaaatctata
tGCATCATTATTACCGAAACAAACGAAACAAATCTGTCAATTCAGTACAG
CAACATCAAGAAGATATAGCAAGAAAAATGCTGACACAAAGTTGATAGAA
ACTTCTGTCCGATATAATGGCGTCCGAATTCAAATGCCACCAAATAAAGA
ATGGTCAAATGAACAATTCGAATCCGAATTACTGAGGTTATCAGAAGGTT
GGAGAGAGCGGGGTGCTCGTAGTGCATTCCTTGAAATTCCCATTCAAATG
AGTCACGTGATACCAGTGGCCTCAAAGTATGGCTTTCAGTACCACCATGC
ACGTGGGCAGCAAGCAGTGTTATGCAAATGGTTAGTTGagaatgaagaaa
ataaaatcCCAAACTTTTCAAATCACACAGTAGGAGTGGCAGGGGCGTGT
TATCGTGAAGATTCAAACGAGCTACTAGTCGTCCGTGACAAAGGAAAGTT
TTCCCATTGGTGGAAATTCCCTGGTGGATATTCAGATTTAGGAGAATATA
TAGGTGAAACCGCAACGCGTGAAGTGTTCGAAGAAACTGGTGTACGATCA
GAATTCAAATCGATTTTGAGCTTCCGACAACACCACGGTGTTTTTTACGA
CCAATCCGATCTCTACTACATATGTCGATTGAACCCGTTAACATACGAAC
TTTCACCGTGTCCTCACGAAATCGAAGATTGTGCATGGAAAAATATCAAC
GAACTTTTAAACGTGGATAACACAACACCTTTCGTCAAAATGATTTGCCG
TTTAATGCAACATGGACAAGAAGTCGGTTTCAATGAGGTCGATATCAGTG
AGCATGATTTAGAGAACTGGGCAAGACCTGGTAATCGAATGAAAATCTTT
CACCGGAATATCGAATCGTACCATGATTAAATGCTAAAAGTCCCCTATTT
ATTCTTTAGAGATATGACtaaaacatgtatttttaaaaatctatatGCAT
CATTATTACCGAAACAAACGAAACAAATCTGTCAATTCAGTACAGCAACA
TCAAGAAGATATAGCAAGAAAAATGCTGACACAAAGTTGATAGAAACTTC
TGTCCGATATAATGGCGTCCGAATTCAAATGCCACCAAATAAAGAATGGT
CAAATGAACAATTCGAATCCGAATTACTGAGGTTATCAGAAGGTTGGAGA
GAGCGGGGTGCTCGTAGTGCATTCCTTGAAATTCCCATTCAAATGAGTCA
CGTGATACCAGTGGCCTCAAAGTATGGCTTTCAGTACCACCATGCACGTG
GGCAGCAAGCAGTGTTATGCAAATGGTTAGTTGagaatgaagaaaataaa
atcCCAAACTTTTCAAATCACACAGTAGGAGTGGCAGGGGCGTGTTATCG
TGAAGATTCAAACGAGCTACTAGTCGTCCGTGACAAAGGAAAGTTTTCCC
ATTGGTGGAAATTCCCTGGTGGATATTCAGATTTAGGAGAATATATAGGT
GAAACCGCAACGCGTGAAGTGTTCGAAGAAACTGGTGTACGATCAGAATT
CAAATCGATTTTGAGCTTCCGACAACACCACGGTGTTTTTTACGACCAAT
CCGATCTCTACTACATATGTCGATTGAACCCGTTAACATACGAACTTTCA
CCGTGTCCTCACGAAATCGAAGATTGTGCATGGAAAAATATCAACGAACT
TTTAAACGTGGATAACACAACACCTTTCGTCAAAATGATTTGCCGTTTAA
TGCAACATGGACAAGAAGTCGGTTTCAATGAGGTCGATATCAGTGAGCAT
GATTTAGAGAACTGGGCAAGACCTGGTAATCGAATGAAAATCTTTCACCG
GAATATCGAATCGTACCATGATTAAATGCTAAAAGTCCCCTATTTATTCT
TTAGAGATATGACtaaaacatgtatttttaaaaatctatatGCATCATTA
TTACCGAAACAAACGAAACAAATCTGTCAATTCAGTACAGCAACATCAAG
AAGATATAGCAAGAAAAATGCTGACACAAAGTTGATAGAAACTTCTGTCC
GATATAATGGCGTCCGAATTCAAATGCCACCAAATAAAGAATGGTCAAAT
GAACAATTCGAATCCGAATTACTGAGGTTATCAGAAGGTTGGAGAGAGCG
GGGTGCTCGTAGTGCATTCCTTGAAATTCCCATTCAAATGAGTCACGTGA
TACCAGTGGCCTCAAAGTATGGCTTTCAGTACCACCATGCACGTGGGCAG
CAAGCAGTGTTATGCAAATGGTTAGTTGagaatgaagaaaataaaatcCC
AAACTTTTCAAATCACACAGTAGGAGTGGCAGGGGCGTGTTATCGTGAAG
ATTCAAACGAGCTACTAGTCGTCCGTGACAAAGGAAAGTTTTCCCATTGG
TGGAAATTCCCTGGTGGATATTCAGATTTAGGAGAATATATAGGTGAAAC
CGCAACGCGTGAAGTGTTCGAAGAAACTGGTGTACGATCAGAATTCAAAT
CGATTTTGAGCTTCCGACAACACCACGGTGTTTTTTACGACCAATCCGAT
CTCTACTACATATGTCGATTGAACCCGTTAACATACGAACTTTCACCGTG
TCCTCACGAAATCGAAGATTGTGCATGGAAAAATATCAACGAACTTTTAA
ACGTGGATAACACAACACCTTTCGTCAAAATGATTTGCCGTTTAATGCAA
CATGGACAAGAAGTCGGTTTCAATGAGGTCGATATCAGTGAGCATGATTT
AGAGAACTGGGCAAGACCTGGTAATCGAATGAAAATCTTTCACCGGAATA
TCGAATCGTACCATGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034899XLOC_034899Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055462-proteinTCONS_00055462-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055462-exon-scaffold_253-1491911889:1285650..1285918TCONS_00055462-exon-scaffold_253-1491911889:1285650..1285918Clytia hemisphaericaexon
TCONS_00055462-exon-scaffold_253-1510915933:1285650..1285918TCONS_00055462-exon-scaffold_253-1510915933:1285650..1285918Clytia hemisphaericaexon
TCONS_00055462-exon-scaffold_253-1575043694:1285650..1285918TCONS_00055462-exon-scaffold_253-1575043694:1285650..1285918Clytia hemisphaericaexon
TCONS_00055462-exon-scaffold_253-1491911889:1286455..1286661TCONS_00055462-exon-scaffold_253-1491911889:1286455..1286661Clytia hemisphaericaexon
TCONS_00055462-exon-scaffold_253-1510915933:1286455..1286661TCONS_00055462-exon-scaffold_253-1510915933:1286455..1286661Clytia hemisphaericaexon
TCONS_00055462-exon-scaffold_253-1575043694:1286455..1286661TCONS_00055462-exon-scaffold_253-1575043694:1286455..1286661Clytia hemisphaericaexon
TCONS_00055462-exon-scaffold_253-1491911889:1286941..1286996TCONS_00055462-exon-scaffold_253-1491911889:1286941..1286996Clytia hemisphaericaexon
TCONS_00055462-exon-scaffold_253-1510915933:1286941..1286996TCONS_00055462-exon-scaffold_253-1510915933:1286941..1286996Clytia hemisphaericaexon
TCONS_00055462-exon-scaffold_253-1575043694:1286941..1286996TCONS_00055462-exon-scaffold_253-1575043694:1286941..1286996Clytia hemisphaericaexon
TCONS_00055462-exon-scaffold_253-1491911889:1287235..1287289TCONS_00055462-exon-scaffold_253-1491911889:1287235..1287289Clytia hemisphaericaexon
TCONS_00055462-exon-scaffold_253-1510915933:1287235..1287289TCONS_00055462-exon-scaffold_253-1510915933:1287235..1287289Clytia hemisphaericaexon
TCONS_00055462-exon-scaffold_253-1575043694:1287235..1287289TCONS_00055462-exon-scaffold_253-1575043694:1287235..1287289Clytia hemisphaericaexon
TCONS_00055462-exon-scaffold_253-1491911889:1287715..1287762TCONS_00055462-exon-scaffold_253-1491911889:1287715..1287762Clytia hemisphaericaexon
TCONS_00055462-exon-scaffold_253-1510915933:1287715..1287762TCONS_00055462-exon-scaffold_253-1510915933:1287715..1287762Clytia hemisphaericaexon
TCONS_00055462-exon-scaffold_253-1575043694:1287715..1287762TCONS_00055462-exon-scaffold_253-1575043694:1287715..1287762Clytia hemisphaericaexon
TCONS_00055462-exon-scaffold_253-1491911889:1287889..1288232TCONS_00055462-exon-scaffold_253-1491911889:1287889..1288232Clytia hemisphaericaexon
TCONS_00055462-exon-scaffold_253-1510915933:1287889..1288232TCONS_00055462-exon-scaffold_253-1510915933:1287889..1288232Clytia hemisphaericaexon
TCONS_00055462-exon-scaffold_253-1575043694:1287889..1288232TCONS_00055462-exon-scaffold_253-1575043694:1287889..1288232Clytia hemisphaericaexon
TCONS_00055462-exon-scaffold_253-1491911889:1288294..1289407TCONS_00055462-exon-scaffold_253-1491911889:1288294..1289407Clytia hemisphaericaexon
TCONS_00055462-exon-scaffold_253-1510915933:1288294..1289407TCONS_00055462-exon-scaffold_253-1510915933:1288294..1289407Clytia hemisphaericaexon
TCONS_00055462-exon-scaffold_253-1575043694:1288294..1289407TCONS_00055462-exon-scaffold_253-1575043694:1288294..1289407Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:1285650..1289407 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.1695	21.6581	17.5268	16.6063	13.9271	9.67215	21.0633	21.9559	12.5851	12.2133	9.62202	11.6249	9.40402	10.1237	10.9582	12.7972	17.3929	19.7301	9.47703	10.1956	19.8498	20.2032	23.0397	23.0705	15.6158	19.1961	7.82625	7.31835	16.8818	16.3742
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003293Nudix_hydrolase6-like
IPR000086NUDIX_hydrolase_dom
IPR020084NUDIX_hydrolase_CS
IPR015797NUDIX_hydrolase_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016787 hydrolase activity
Blast
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BLAST of TCONS_00055462 vs. Swiss-Prot (Human)
Match: NUDT6 (Nucleoside diphosphate-linked moiety X motif 6 OS=Homo sapiens GN=NUDT6 PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 4.483e-54
Identity = 96/257 (37.35%), Postives = 150/257 (58.37%), Query Frame = 2 
Query:  194 RYNGVRIQMP---PNKEWSNEQFESELLRLSEGWRERGARSAFLEIPIQMSHVIPVASKYGFQYHHARGQQAVLCKWLVENEENKIPNFSNHTVGVAGACYREDSNELLVVRDKGKFSHWWKFPGGYSDLGEYIGETATREVFEETGVRSEFKSILSFRQHH---GVFYDQSDLYYICRLNPLTYELSPCPHEIEDCAWKNINELLNVDNTTPFVKMICRLMQHGQEVGFNEVDISEHDLENWARPGNRMKIFHRNI 946
            R+ G+ +++             F+  L    + WR  G  + +L IPI  S  I  A+  GF +HHA    + L  WL E   +++P +++H VGVAGA + E + ++LVV+D+ K  + WKFPGG S+  E IG+TA REVFEETG++SEF+S+LS RQ H   G F  +SD+Y ICRL P ++ ++ C  E   C W ++N+L   +NTTP    + RL+ +G   GF+++D++  +L      G   K++H+ +
Sbjct:   52 RFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLHIPILQSRFIAPAASLGFCFHHAESDSSTLTLWLREGP-SRLPGYASHQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGAF-GKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAKTENTTPITSRVARLLLYGYREGFDKIDLTVEELPA-VYTGLFYKLYHKEL 305
The following BLAST results are available for this feature:
BLAST of TCONS_00055462 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NUDT64.483e-5437.35Nucleoside diphosphate-linked moiety X motif 6 OS=... [more]
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