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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055532 ID=TCONS_00055532|Name=TCONS_00055532|organism=Clytia hemisphaerica|type=transcript|length=2958bpRun BLAST on NCBI protein sequence of TCONS_00055532-protein >TCONS_00055532-protein ID=TCONS_00055532-protein|Name=TCONS_00055532-protein|organism=Clytia hemisphaerica|type=polypeptide|length=559bp MHRYETLKTLGDGTYGSVLLGKAHDTGEPVAIKKMKRKYYSWEECINLRERun BLAST on NCBI transcript from alignment at scaffold_253:754380..761362- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055532 ID=TCONS_00055532|Name=TCONS_00055532|organism=Clytia hemisphaerica|type=transcript|length=6983bp|location=Sequence derived from alignment at scaffold_253:754380..761362- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_253:754380..761362- >TCONS_00055532 ID=TCONS_00055532|Name=TCONS_00055532|organism=Clytia hemisphaerica|type=CDS|length=20160bp|location=Sequence derived from alignment at scaffold_253:754380..761362- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055532 vs. Swiss-Prot (Human)
Match: MAK (Serine/threonine-protein kinase MAK OS=Homo sapiens GN=MAK PE=1 SV=2) HSP 1 Score: 478.404 bits (1230), Expect = 5.940e-156 Identity = 250/498 (50.20%), Postives = 331/498 (66.47%), Query Frame = 2
Query: 113 MHRYETLKTLGDGTYGSVLLGKAHDTGEPVAIKKMKRKYYSWEECINLREVKSLRKLSHTNLIKLKEVIRENNQLFFVFEYMKENLYQLMKNRDKLFPETTVRNIMYQILQGLAFMHKTGYFHRDMKPENLLCSGPEIVKIADFGLVREIRSRPPYTDYVSTRWYRAPEVLLRSTNYNSPIDIFALGCIMAELYTLRPLFPGSSEVDMIFKICSVLGTPNKNDWEEGYQLASKMNFKFPKMVSTPLRQLIPNASQDGIEILYAMLAWNPQQRPSSQKSLAHKFFTVGQNL-----HRSHKQ----KAKPLKAETGLGERNNTNLQETVKPIXXXXXXXXXXXXXXXXXXASGGKFDFEPK---------------------KPEGPKKSQEPRKRWGSSNMNNKQNAAATKDSVDEFDSILDG--------LGSSTNSFNKRHPIKKRDTMESISDKEKVLGGFQALPSIGSGK---KRTTPGSAKEHYLQKSRYYPG 1483
M+RY T++ LGDGTYGSVL+GK++++GE VAIK+MKRK+YSW+EC+NLREVKSL+KL+H N+IKLKEVIREN+ L+F+FEYMKENLYQLMK+R+KLFPE+ +RNIMYQILQGLAF+HK G+FHRDMKPENLLC GPE+VKIADFGL RE+RS+PPYTDYVSTRWYRAPEVLLRS+ Y+SPID++A+G IMAELY LRPLFPG+SEVD IFKIC VLGTP K+DW EGYQLAS MNF+FP+ V L+ LIPNAS + I+++ ML W+P++RP++ ++L H +F VGQ L H KQ + +PL+++ L E L + + + + + PK KP G + R+RWG Q + DS +E + G +G K P + + + S S+ G ++LP++ S K + +T ++K++YL++SRY PG
Sbjct: 1 MNRYTTMRQLGDGTYGSVLMGKSNESGELVAIKRMKRKFYSWDECMNLREVKSLKKLNHANVIKLKEVIRENDHLYFIFEYMKENLYQLMKDRNKLFPESVIRNIMYQILQGLAFIHKHGFFHRDMKPENLLCMGPELVKIADFGLARELRSQPPYTDYVSTRWYRAPEVLLRSSVYSSPIDVWAVGSIMAELYMLRPLFPGTSEVDEIFKICQVLGTPKKSDWPEGYQLASSMNFRFPQCVPINLKTLIPNASNEAIQLMTEMLNWDPKKRPTASQALKHPYFQVGQVLGPSSNHLESKQSLNKQLQPLESKPSLVEVEPKPLPDIIDQVVGQPQPKTSQQPLQPIQPPQNLSVQQPPKQQSQEKPPQTLFPSIVKNMPTKPNGTLSHKSGRRRWG-------QTIFKSGDSWEELEDYDFGASHSKKPSMGVFKEKRKKDSPFRLPEPVPSGSNHST--GENKSLPAVTSLKSDSELSTAPTSKQYYLKQSRYLPG 489 The following BLAST results are available for this feature:
BLAST of TCONS_00055532 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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