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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055528 ID=TCONS_00055528|Name=TCONS_00055528|organism=Clytia hemisphaerica|type=transcript|length=952bp
GTTTAAAAGAGTGGAAAGAGAATTAATAAAGTGTGTTTTTCTAGAGTTCA
AGTTCAAGAGAAAGTCAAAAGGGTAACGTCTGATTTGATTTCAACATTCG
ATTAAAATGATTCAAATATTACATAACCAGCGAGCAGCAAAGAAGAAACA
AAGTGAAAACAAGGGAGGACCAGCAGAATGGGGTACCCCCAGAAGTGTTT
CTCATTGCAACATGGAAAGAAGATCAAGCATCACAGCTGGGGGAACCATT
TGGACGCCGCCTGCTCTCGCATCAAAATCAACGGCCACTCGCCCACGACC
ATCAAGCCTAAATGACAAACATAAAACCAAAGGCAACGAGAAACGAAAGC
CAAGAGTAACAAAGAAAGAACGATTGGAAGATTATGACAAAAATAATCAA
CATGCTTATATCGCTGTTACTAACGAAGATATTATTTTGAGGTCTACGCT
TAACGAACATAAAGCGATGAATAAAAAATGCACGGATATCGTAAAACAAT
TTGACGGGGTTAAAGACCTAATCGCGCAACGAGTAGCTGAGAAATGTGCG
GCAACGACATCGAATATAGTTGTAAATATCGATGATCATTCGAATGatat
tgaaaacgaaagtgaaagttgtTGTGGCGTTGATTGTGGAGATCATGTGG
AAACAGTCAATGTTTACAACGAAGCTGACATCGATGCTTATGCTTGTGAA
ACGAGTGAATGTGAACTCAATTGTCAAATGGAATGTGTCGGTATAGATAG
TTGATGAACGGCGAGGAGCTTCTACAGAATTTGGTGTCAAGAATTTCTTT
GCTTCATTATAACTTCTTTTACAAAAGGAAGCACAAACTTACCCCAAGAA
TCTCgtgtgaaaaaatcaaaacttaaaaGCTCAAAATAAAATAGTCAGAT
ATGTTTTTTGGATTGTTTGGTAAATAGATGCtgaattaaaatttgatata
ac Run BLAST on NCBI protein sequence of TCONS_00055528-protein >TCONS_00055528-protein ID=TCONS_00055528-protein|Name=TCONS_00055528-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
MIQILHNQRAAKKKQSENKGGPAEWGTPRSVSHCNMERRSSITAGGTIWT
PPALASKSTATRPRPSSLNDKHKTKGNEKRKPRVTKKERLEDYDKNNQHA
YIAVTNEDIILRSTLNEHKAMNKKCTDIVKQFDGVKDLIAQRVAEKCAAT
TSNIVVNIDDHSNDIENESESCCGVDCGDHVETVNVYNEADIDAYACETS
ECELNCQMECVGIDS Run BLAST on NCBI transcript from alignment at scaffold_253:747533..748823- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055528 ID=TCONS_00055528|Name=TCONS_00055528|organism=Clytia hemisphaerica|type=transcript|length=1291bp|location=Sequence derived from alignment at scaffold_253:747533..748823- (Clytia hemisphaerica)
GTTTAAAAGAGTGGAAAGAGAATTAATAAAGTGTGTTTTTCTAGAGTTCA
AGTTCAAGAGAAAGTCAAAAGGGTAACGTCTGATTTGATTTCAACATTCG
ATTAAAATGATTCAAATATTACATAACCAGCGAGCAGCAAAGAAGAAACA
AAGTGAAAACAAGGGAGGACCAGCAGAATGGGGTACCCCCAGAAGTGTTT
CTCATTGCAACATGGAAAGAAGATCAAGCATCACAGGCAAGAAAATAGTT
TACCATGATATTCATGACGTAATATTTTTTACGGAAACACTCAGGTTTTT
GTCATTGGTGACAAATATTATTTATGTTAGAGAAAAACTGTTTAAAATTT
GCCTCTACTGGAAAATCCAGGGTGTTTCTAACGAAAAATTATGGAACGTA
CGTACTAGGAATATATAACGGACTTGACTGTATATACCCCCTTTCTCATT
TATCCTCAAGAAAAGCTTCACCAATCCAAGACTTTTTTGTTAATTCAGTA
TATTCGTCTTGTTGCGAAGAAAAAAAGACCTGAAGTATATCACCTACAAA
ACATTTCTGTGTTTTTATCTTTCAGCTGGGGGAACCATTTGGACGCCGCC
TGCTCTCGCATCAAAATCAACGGCCACTCGCCCACGACCATCAAGCCTAA
ATGACAAACATAAAACCAAAGGCAACGAGAAACGAAAGCCAAGAGTAACA
AAGAAAGAACGATTGGAAGATTATGACAAAAATAATCAACATGCTTATAT
CGCTGTTACTAACGAAGATATTATTTTGAGGTCTACGCTTAACGAACATA
AAGCGATGAATAAAAAATGCACGGATATCGTAAAACAATTTGACGGGGTT
AAAGACCTAATCGCGCAACGAGTAGCTGAGAAATGTGCGGCAACGACATC
GAATATAGTTGTAAATATCGATGATCATTCGAATGATATTGAAAACGAAA
GTGAAAGTTGTTGTGGCGTTGATTGTGGAGATCATGTGGAAACAGTCAAT
GTTTACAACGAAGCTGACATCGATGCTTATGCTTGTGAAACGAGTGAATG
TGAACTCAATTGTCAAATGGAATGTGTCGGTATAGATAGTTGATGAACGG
CGAGGAGCTTCTACAGAATTTGGTGTCAAGAATTTCTTTGCTTCATTATA
ACTTCTTTTACAAAAGGAAGCACAAACTTACCCCAAGAATCTCGTGTGAA
AAAATCAAAACTTAAAAGCTCAAAATAAAATAGTCAGATATGTTTTTTGG
ATTGTTTGGTAAATAGATGCTGAATTAAAATTTGATATAAC Coding sequence (CDS) from alignment at scaffold_253:747533..748823- >TCONS_00055528 ID=TCONS_00055528|Name=TCONS_00055528|organism=Clytia hemisphaerica|type=CDS|length=1296bp|location=Sequence derived from alignment at scaffold_253:747533..748823- (Clytia hemisphaerica)
CTGGGGGAACCATTTGGACGCCGCCTGCTCTCGCATCAAAATCAACGGCC
ACTCGCCCACGACCATCAAGCCTAAATGACAAACATAAAACCAAAGGCAA
CGAGAAACGAAAGCCAAGAGTAACAAAGAAAGAACGATTGGAAGATTATG
ACAAAAATAATCAACATGCTTATATCGCTGTTACTAACGAAGATATTATT
TTGAGGTCTACGCTTAACGAACATAAAGCGATGAATAAAAAATGCACGGA
TATCGTAAAACAATTTGACGGGGTTAAAGACCTAATCGCGCAACGAGTAG
CTGAGAAATGTGCGGCAACGACATCGAATATAGTTGTAAATATCGATGAT
CATTCGAATGATATTGAAAACGAAAGTGAAAGTTGTTGTGGCGTTGATTG
TGGAGATCATGTGGAAACAGTCAATGTTTACAACGAAGCTGACATCGATG
CTTATGCTTGTGAAACGAGTGAATGTGAACTCAATTGTCAAATGGAATGT
GTCGGTATAGATAGTTGAATGATTCAAATATTACATAACCAGCGAGCAGC
AAAGAAGAAACAAAGTGAAAACAAGGGAGGACCAGCAGAATGGGGTACCC
CCAGAAGTGTTTCTCATTGCAACATGGAAAGAAGATCAAGCATCACAGCT
GGGGGAACCATTTGGACGCCGCCTGCTCTCGCATCAAAATCAACGGCCAC
TCGCCCACGACCATCAAGCCTAAATGACAAACATAAAACCAAAGGCAACG
AGAAACGAAAGCCAAGAGTAACAAAGAAAGAACGATTGGAAGATTATGAC
AAAAATAATCAACATGCTTATATCGCTGTTACTAACGAAGATATTATTTT
GAGGTCTACGCTTAACGAACATAAAGCGATGAATAAAAAATGCACGGATA
TCGTAAAACAATTTGACGGGGTTAAAGACCTAATCGCGCAACGAGTAGCT
GAGAAATGTGCGGCAACGACATCGAATATAGTTGTAAATATCGATGATCA
TTCGAATGATATTGAAAACGAAAGTGAAAGTTGTTGTGGCGTTGATTGTG
GAGATCATGTGGAAACAGTCAATGTTTACAACGAAGCTGACATCGATGCT
TATGCTTGTGAAACGAGTGAATGTGAACTCAATTGTCAAATGGAATGTGT
CGGTATAGATAGTTGAATGATTCAAATATTACATAACCAGCGAGCAGCAA
AGAAGAAACAAAGTGAAAACAAGGGAGGACCAGCAGAATGGGGTACCCCC
AGAAGTGTTTCTCATTGCAACATGGAAAGAAGATCAAGCATCACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055528-exon-scaffold_253-1575043694:748588..748823 | TCONS_00055528-exon-scaffold_253-1575043694:748588..748823 | Clytia hemisphaerica | exon |
| TCONS_00055528-exon-scaffold_253-1575043694:747533..748248 | TCONS_00055528-exon-scaffold_253-1575043694:747533..748248 | Clytia hemisphaerica | exon |
| TCONS_00055528-exon-scaffold_253-1510915933:748588..748823 | TCONS_00055528-exon-scaffold_253-1510915933:748588..748823 | Clytia hemisphaerica | exon |
| TCONS_00055528-exon-scaffold_253-1510915933:747533..748248 | TCONS_00055528-exon-scaffold_253-1510915933:747533..748248 | Clytia hemisphaerica | exon |
| TCONS_00055528-exon-scaffold_253-1491911889:748588..748823 | TCONS_00055528-exon-scaffold_253-1491911889:748588..748823 | Clytia hemisphaerica | exon |
| TCONS_00055528-exon-scaffold_253-1491911889:747533..748248 | TCONS_00055528-exon-scaffold_253-1491911889:747533..748248 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:747533..748823 - |
Blast
The following BLAST results are available for this feature:
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