TCONS_00055497 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055497
Unique NameTCONS_00055497
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2824

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055497 ID=TCONS_00055497|Name=TCONS_00055497|organism=Clytia hemisphaerica|type=transcript|length=2824bp
tcagattttaaacaataaacaaaaaatagataaataaataaaagaaagct
TCAAGATGGATAGTGAAATGGCAAAGAAGACATTTGAGCTGCAAAACAAT
ATTGAGACTGTCAATACAGTGGatgaaatttataaatataGTCAAGAACA
ACAGCAAGAAATACTATCAAGAAAACCATGGACTAAAGATCCGCATTATT
TCAAGAATATCAAAGTATCAGCTCTTGCATTACTGAAGATGGTGATGCAT
GCACGATCAGGGGGGACACTGGAAGTCATGGGTTTGATGTTAGGGAAAGT
TGATGGAGACACCATGATCGTAATGGATGCCTTTGCATTGCCCGTTGAAG
GGACTGAGACGAGAGTCAATGCACAAGCTGCTGCCTATGAATACATGACA
CAATATATCGAATCTTCAAAATCTGTTGGACGTTTAGAAAATGCGATCGG
TTGGTACCATTCACATCCTGGGTACGGATGCTGGCTTTCTGGTATCGACG
TGTCCACTCAAATGGTCAACCAACAGTTTCAAGAACCATTTGTAGCTATC
GTTaTTGATCCAACGAGAACTATTTCAGCTGGCAAAGTGAACATGGGTGC
ATTTCGTACATATCCGAAGgGTTACAAACCTCCAGATGAAAGTCCCTCTG
AATATCAAACCATCCCATTAAATAAAATCGAAGACTTTGGCGTTCATTGT
AAACAGTACTACTCGCTAGAGGTTTCATACTTCAAGTCAGCACTGGATCA
AAAGTTGTTAGATTCTCTTTGGAACAAATACTGGATCAACACTCTTTCCT
CTTCTACCTTATTCACGAATGCTGACTATGTGACGAACCAGATTCTTGAT
CTATCAGAAAAACTGGAACAATCAATATCTCAGGTATCTCGTGGTATGAG
TTATGCTGAAAATTGGGATAAGAAGGATGAGCCAGGGAAACTACAGAAAG
CTAATAAGGATTGTTGCAAGTTGAACATCGAAGCACTGCATGGTTTGATG
AGCCAAGTTTTAAAGAACCAGCTATTCAACAATGTCGGGTGTAGAGAATG
AAACTAATTTGTAGATATGATgacatttattttgttttgtaaatAGTATT
GAATACAGACGTTTTTTAGTTCTTCCCTACATTTCCTCTTTCATTTTTCG
GTATACTGGCTAATCTCTGACCTTTTGAGATCAAGATGGACAGGAAAGAA
ACACTGACTCGTTTAATTCTTGGGCATGTTTTCCTAATGGACCGTTATAA
TTTTATCAATTAATAAAACCAGACTTCTTCAGCTCCTCTACTCTAACTTg
acgttttaaattttcttactcATCTTCTTTTCTTCATTCTAGTGGgattg
aaataataaaaaatcaaatcaacaatAAATATTATCATGGAAATGTCACA
GATATGGACAGGTTTAGCATGGCTGGTTGGTATCAATACAGTTCTGACTG
TCATCCTTCTGCTTTTCATGACCAAATATCCGAAATACATCATGTATGCA
TACAATGCATTCACTCGAATAAAGCATGGTATAGTGAAAAAGAAGATCAA
GGGCTCCAAGAACACTTTCAGTTATCTTGAGTACGGTGCAACAACAGCTC
CAACCTTGCTTCTCGTCCATGGATTCAGCTCTTCTAAAGAATCTTTCTTC
GGAGTGTTCAAGCATATTCCGAGCAAATTTCATGTGCTGGCGGTAGATCT
TCCCGGCCACGGTGaaactcctttgaaagatactGATATTGGAATTCTCC
ATTTCGTCGAATGTGTTAACGAGTTTATAAAGATAATGGATTTGGAAGAG
AAGAAATTCCACTTAGTGGGAGGAAGTATGGGAGGACACATTGCTGGTGT
GTATGCAACTCTATACCCTGAAAAGTTGCTCTCACTCTGCATGGTCTGTC
CCCATGGTATCAATCATGAGCATCATGAAAAGATGGCGGCACAAGCTGTG
CAAGAACAAAAATCCATGTTGTTACCACAAACAAAGGAAGAGCTGAGGGC
CATGTTTACTTGGCTCACTCACAAGCAGGTCAATTTCCCTGACATCATTT
TAAGTGGAATTTTACAAATAAGACTGGAAAAGAATGATTATTATAAGAAA
TtgGGTGAAGTGCTGATTCAAGATGATAACAAAAATGTGTTAGAACGAAA
CcttcataaaatcaaaacaccTCTTCTTCTCATATGGGGTAAAAACGATA
ACGTTTTGCACCCTGATTGCGTGGAGGTGATCAAGGAGAAGATGAGTGAA
CCACCCAAGACAGTTGCTTTGTTTGAAGATGTTGGGCATGGTGTCTTCTT
AGAACGTCCACGAAAATTCATTTTCACACTCCTCGATTTTCTCAACTCTT
TAGAATGACAGAATAACTGATTGGAATAACGTTGAAAGCTTTTGTCAGTG
CCAAGATAATTTCTGGTACTTTCTGATTATATTACTGATGAAACTGTTCA
AATACACAAATTTATTTCAACTTGATTCATACCCCAGAACTTACTCAAGT
TCAGTTGAGCTAGATCTATGAATTTTTATCTGCCTTTCTGTATGTGAGTC
CCCTAAAAAGTTTCGGGTGCGAGCTGAGAGAGTTTAATGCAAAACTGAGG
CTTATTCGACTTACTTATCAATTTATAAGTGAGCAGTTATGAGTGATTTA
AATGATACTTGAAGTTGAAACAAGTTAGATAATAAAAAGACGCACAAAAC
CACCAGTACATTTATCAAACATTTTAcaattatttttggacctacctgga
ggtcctataaattaacctctgtccgttcgtccgtccgtccgttcgtccgt
ccgtctgttaccagcttttctcag
Run BLAST on NCBI

transcript from alignment at scaffold_253:397214..414335-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055497 ID=TCONS_00055497|Name=TCONS_00055497|organism=Clytia hemisphaerica|type=transcript|length=17122bp|location=Sequence derived from alignment at scaffold_253:397214..414335- (Clytia hemisphaerica)
TCAGATTTTAAACAATAAACAAAAAATAGATAAATAAATAAAAGAAAGCT
TCAAGATGGATAGTGAAATGGCAAAGAAGACATTTGAGCTGCAAAACAAT
ATTGAGACTGTCAATACAGTGGATGAAATTTATAAATATAGTCAAGAACA
ACAGCAAGAAATACTATCAAGAAAACCATGGACTAAAGAGTATATCATCT
GATTATTTCCTTTTTAATCTTTCAAAACTTTTGTACACAATATATCTCTG
GAAACTTCAAATGTCCTGGCTTATAGGTTTTGCTCATTGTCGATATTTGA
TCACCCATCTCATATTTCTTCTTTGTAGTCCGCATTATTTCAAGAATATC
AAAGTATCAGCTCTTGCATTACTGAAGATGGTAAGCTCTTGACTTTTAAA
GTGACATTGGGATCTCCCTGTATTTCCTCCAATGGTTCCAACACATTTGG
ATCGATCTTCATCCTAATTATCCAAATTGTTCCCACAATGTCTTGATTTG
TATAGTACACTATAAGAACAATCCTGAAGCAATGCTTATTCTCAAAAAAT
ATACATTTGTATCCAGATTTTCCTGGATTTTCTGTGGAAACTTTTTACAA
CAAGTTACAGCAGCTAATACGATGGCAAATTTTACTCCACTACATCTATA
ATTTCTACAAGCCTTATTTTCGTAGAACAGCTGATGGTCCATTTAACCAT
ATTGTTTTCATGATCATTCATTATCACCAGGTGATGCATGCACGATCAGG
GGGGACACTGGAAGTCATGGGTTTGATGTTAGGGAAAGTTGATGGAGACA
CCATGATCGTAATGGATGCCTTTGCATTGCCCGTTGAAGGGACTGAGACG
AGAGTCAATGCACAAGCTGCTGCCTATGAATACATGACACAATATATCGA
ATCTTCAAAATCTGTGAGTTTCATGCTTACAGAAAATATTGTTAAAAAGA
AAAATGAGCTATCAATGAAGTATTTCACACAGATGAAAAGTGGTCTAAAT
TATATTCATAAATTTAATATTTTCAAATATTTTGACCTTCATGCTTCGTG
AGAGTGTCAGATATTTTCCATCGATTATGAAGAGCGTTTGACTTTTTATT
GTCCATCGGTTTTCTTTGGTTAGGTTGGACGTTTAGAAAATGCGATCGGT
TGGTACCATTCACATCCTGGGTACGGATGCTGGCTTTCTGGTATCGACGT
GTCCACTCAAATGGTCAACCAACAGTTTCAAGAACCATTTGTAGCTATCG
TTGTAAGATCTCTTTCTTTATCATGTCACTTTGCAGGGGTTGCTTGATTG
CTTAAAGGTATAGGGGTACGACTACTGTTTTGATTAAAATGAATTCCTTC
AATTTGTGTCTCTATCTATTTGTGTTCTTTTTTGTTTAGATTGATCCAAC
GAGAACTATTTCAGCTGGCAAAGTGAACATGGGTGCATTTCGTACATATC
CGAAGGTAAATAACCAAACAAGTCTTTTTGAAAGAAAACGCTATCACTTT
TCTCTACGTCCATCTTACTTCAGGTGGTGAGTTCTGATTTTGAGTTTTAT
TAAGTTAAGTTGAAATTTTTAAAGTCCTAATGAAACCCTATGTCTAGTTA
TACTTTGATAACTGTTCAGAATCTGCGCAATTCGTTTATGACTTTTCCTC
AAATTTCTTTTATTTTGTTAGGGTTACAAACCTCCAGATGAAAGTCCCTC
TGAATATCAAACCATCCCATTAAATAAAATCGAAGACTTTGGCGTTCATT
GTAAACAGTAAGTTATACTCATTGAGTTTAAAGACGAAGGCTAGAGGAAA
TCTCTATCCAACCTTTCTCAAGCAATAAAAAGTGAAGTCTTAAGATTTGT
GCCGCTATACTTTAACGCTTGATTGAAACCAGCACTTTCTTTATTTTAAC
GTGGTACATTTGAGATTCTTTTGTCTAGTCTAAGTATGAGTTGTCGATGC
TCGGCAAAGCTTATCACCTATGATTACGTTACCTTTGTTTCTTTATTCTA
GCTAAGATATTTTGCAGTAAATCATCTTTTCNACGTTACCTTTGTTTTCT
TATTCTAGCTGAGATATTTTGCAGTAAATCACCTTTTGATCCTTCATCAT
ATTTTAGGTACTACTCGCTAGAGGTTTCATACTTCAAGTCAGCACTGGAT
CAAAAGTTGTTAGATTCTCTTTGGAACAAATACTGGATCAACACTCTTTC
CTCTTCTACCTTATTCACGGTCAGTGGTACAGTATTCAAATGCAATACGT
ACGGACTTACACTAGCCCATAACGTGGATAAAACAGGACATATTGCCCCT
AGTCTGAACAAGAATTTTCTGTCGTTTCTGTCGGGGCGGGGAGGGAGGCA
CTTACACTAGCTTTACATAGTGAGAGATAAGTTTCACTTTATTCAAATAG
AGATACTATTCCGTTTATTTTTCCACAGAATGCTGACTATGTGACGAACC
AGATTCTTGATCTATCAGAAAAACTGGAACAATCAATATCTCAGGTAAAG
CATTTTTTAGGTAACTTTATTGCAAAATGTGGTTTCCACTTGAAATTATT
AAATATTCTCCCATGATACGCCCTACAATAAGGTATAGAACGAGTGGTTG
ATATACTTTTCGATTAAACTAAAGATTATTCACAGATTTTCACAGTTCAT
ACCACTTTCTTTCTTTTTCTCCTAGGTATCTCGTGGTATGAGTTATGCTG
AAAATTGGGATAAGAAGGATGAGCCAGGGAAACTACAGAAAGCTAATAAG
GATTGGTATGTTTACTGTTGTTGGTTTTTTTACATTTTTATAATTGTACT
TGAAGTAAAGTTGAAAGAAGATGGCTGTATTATTCTTGATGACGATTGGA
AATTTTGACAGATAGCTCTTTTAACTTTTGGACCTTCAAATAAAACCAGA
CTTAGGTAGCGTAGCCAAGAGAGGCCCAAAATTTATGAAGGAGAAGNTGG
CTGTATTATTCTTGATGACGATTGGAAATTTTGACAGATAGCTCTTTTAA
CTTTTGGACCTTCAAATAAAACCAGACTTAAGTAGCGTAGCCAAGAGAGG
CCCAAAATTTGTGTAGGAGAGCAGATTTTTATGACACTGTAATTATCTAT
TCATGGTATTAATAGATAATTAAAGTGTCATAAAAATCTGCTCTCCTACA
CAAATTTTGCGCCCCTCTTGGCTACGCTACTGGACTTTGTGGTATCTTCG
AGTTTGACAAGAGCATGCGAATTGGTCTCATGAATTAAACCTGTTTTATT
TCAGTTGCAAGTTGAACATCGAAGCACTGCATGGTTTGATGAGCCAAGTT
TTAAAGAACCAGCTATTCAACAATGTCGGGTGTAGAGAATGAAACTAATT
TGTAGATATGATGACATTTATTTTGTTTTGTAAATAGTATTGAATACAGA
CGTTTTTTAGTTCTTCCCTACATTTCCTCTTTCATTTTTCGGTATACTGG
CTAATCTCTGACCTTTTGAGATCAAGATGGACAGGAAAGAAACACTGACT
CGTTTAATTCTTGGGCATGTTTTCCTAATGGACCGTTATAATTTTATCAA
TTAATAAAACCAGACTTCTTCAGCTCCTCTACTCTAACTTGACGTTTTAA
ATTTTCTTACTCATCTTCTTTTCTTCATTCTAGTGGGATTGAAATAATAA
AAAATCAAATCAACAATAAATATTATCATGGAAATGTCACAGATATGGAC
AGGTTTAGCATGGCTGGTTGGTATCAATACAGTTCTGACTGTCATCCTTC
TGCTTTTCATGACCAAATATCCGAAATACATCATGTATGCATACAATGCG
TGAGTCTTATCTTTTGTCTTTTGAAAGCCTTCCGAGGAGGCGATATTTTC
TATCTAGAAAATTTCTTTCTAGAATCTGAGAATTTCTGTATGTCTGTATG
TATGTCACCTCATAACTTTGGGGCAGGCTGGGGACTTCAAAAATGGTCCG
AGTCAGCTGAAATTTTTGCACACTTGTTCCTTGGGTGAAAATCTGGGGGT
GTTTCTTTTATTTTTTGAAAATTTTGATTTTTGGGTCTACTTAGAGAAAA
GTTAGCTTATATAAAAAATCGACAGTTCCGTACCAATCCTCGGCAACTTC
AACCGAGAGTCATTTGTGTGTTCATGGCCCAGTGTAATTTTACTCCGGGG
TGGCGTTACAAATTCTTCTATTTCGGAACGATCTTCCTTTCTCAAACATC
AAAATGTAAAATCCCTTAACCAGTTTCACTCGTGTGATTTACGAAGTAGA
TTTTTGAGAGGCTGATTTTCCATTCTCTTTTGTTCATCTTCAGATTCACT
CGAATAAAGCATGGTATAGTGAAAAAGAAGATCAAGGGCTCCAAGAACAC
TTTCAGTTATCTTGAGTACGGTGCAACAACAGCTCCAACCTTGCTTCTCG
TCCATGGATTCAGCTCTTCTAAAGAATCTTTCTTCGGAGTGTTCAAGCAT
ATTCCGAGCAAATTTCATGTGCTGGCGGTAGATCTTCCCGGCCACGGTGA
AACTCCTTTGAAAGATACTGATATTGGAATTCTCCATTTCGTCGAATGTG
TTAACGAGGTACTTCAAATCTTTTTAAATCAGATAGTTCTTTTCTATTTG
TTGGAAAGGTTTATTTGTTCAATTTCACTGCAAAGCTAACTCCAATTAGA
TTTTACCTCTATGCGATCGCTTTATAGAACTCTCTTGGTATCACTACAAT
ACCAACTTCAAATTGTTATAATTATTTGTTGGACCATTTTTGGTCATTCT
TATTCTTTCGAATACACTGAAACATATTATTGTCTACCGTAGAAAAATTC
TCGCCGTTTCTTTTTCACGCTAGTTTATAAAGATAATGGATTTGGAAGAG
AAGAAATTCCACTTAGTGGGAGGAAGTATGGGAGGACACATTGCTGGTGT
GTATGCAACTCTATACCCTGAAAAGTTGCTCTCACTCTGCATGGTCTGTC
CCCATGGTATCAATCATGAGCATCATGAAAAGATGGCGGCACAAGCTGTG
CAAGAACAAAAATCCATGTTGTTACCACAAACAAAGGAAGAGCTGAGGGC
CATGTTTACTTGGCTCACTCACAAGCAGGTCAATTTCCCTGACATCATTT
TAAGTGGAATTTTACAAATAAGACTGGAAAAGAATGATTATTATAAGAAA
TGTAAGTCCAACAAAATTTTTTCTCATTTCATCATTTTTGGACCTACCCC
GGTGGGGTGAAGGTCCTATAAATTCACCTCTGTCCGTCCGTCCGTCCGTT
CGTTACCAGCTTTTCTCGAGATTGAATCATAGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCTCGAGATTGAATCATAGGAATCATT
TGATTTTTGGTACAAAGGTGCAAAACGGTGGTGGCCAAAATGTGACGGAG
CCCGATTTTCGAAAACAAAATTTTTGGGGCAAATTTGGGCCAAAAAACGG
CTAAAAAACGGGGTTTTTGGACTTGTGAAAAATTGGATCATTAAATTTTT
TTGATTTTTTGCATGAAAGTAGGGTACCATCATAGGTAAAAGATGGCTCA
AGCAGATTTTTGCAAAAAAATTTATTTGGCTTANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
TCATGAGGGCTTACTTTTGAAGAATATGTGTGTTTAGACATGAAATTTTG
GTTGCTTGGCGTGTTTTTATAGAAAAACTGGCCAAATTCAATATTTTTTT
ACAAGCACATCATCAATTACCTAGGTATTAGCTTTTCTCGAGATTGGCTC
TTTCATTCTTTATGATTTTTTGCACAAAGATGCATAACTATAAACCCTCG
AATGTGACTAAGCCCGATTTTCGAAAAAAAATGTTTTTGGGCAAATTTGG
GCCAAAAAACGGCTAAAAAAAAGGTTTTTTGGACTTTGTGAAATATTGGA
ACGTTGTTTTTTTCTGATTTTTTGCATGAAAGTAGGTAAAAGATGGGTCA
AGCAGATTTTTGTAAAAAAACTTTTCAGCTCAAAAAAACGCATCTTTATC
TATAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTTATAAGAAACAAACGACTAATTTTAATAAATCGTCACTAT
TTGTGTTCTGAATGATTGTTTAACGTTCATTCTCACGTAGATATCAATTA
TATATGTTAAATGTTCTTAACCTGTTCTTATTGCTCCGGCCTAGGAGCCT
TTAATTCTCTCTTCCGACGGTCAAGACATTTTTTGTTTGTTTATCTAATC
CGATGATCTATTCCGATTTAACAAAAACGGATCACTGATTCCGATAATAC
TATGATTTGATTGGCCGAAAGTATTTAGAAAAAGATGGCTGCCGAAAGTG
GACTAGCTGACTGTGTAGCAAATACTGGCAAATCTCAGTGAAAAATTGAT
CGTTTTCATCATTATTCATGATGTTTTGGACATGATTTATGAGAAGCTTG
ATGCATAAACTTGACAATGAAACTTTCAAACACACAGCCATTGAAATTCA
AAAGACAATATTAAAATTACGACATTACAGTGCAAATTTGAAAACGACCT
GAGTAGTTTTTGTGGTGTTATGTCATATGTGTAATGGCTGAAAATGATCC
TGTTTTGTATTCATCTGTTGACTGGCTGGCGACCGTTCCTTTTGATTTTT
GAAACCCGACACAGATTTTTTACAAACATATCACTATGAGAATTCGATAA
AGGATACTAAAACACAATTCCTGTGTAAATTTGAACAAGATTGGAGAAAT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGT
AATTTCATCGCGGCTGGCGACCGTTCCTTTTGATTTTTCAAACGCGACAC
AGATTTTTTACAAACATATCACTATGAGAATTCAGTAAAGGATACTACAA
CACAATTCCTGTGTAAATTTGAACAAGATTGGAGAATTTTTCACAGTGTT
ATGGCTGAAAATGATCGTGTTTGGACTTTATTGTAATTTCATCGCGGCTG
GCGACCATTCCTTTTGATTTATTTCAAACGCGACACAGATTTTTTACAAA
CATATCACTATGAGAATTCAGTAAAGGATACTAGAACACAATTCCTGTGT
AAATTTGAACAAGATCAGAGAAATTTTCACAGTGTTATAACTGAAAGTTA
TATTTTTTGGACTTTGTCGTAATTTCATTTGGCTGGGCGGGGCGACTGTT
CCTCTCAGTGTAGACCTAAAGCTCCAAAACAGCATCTAATAACATGAAAA
CCAGAATATGATTCTTCAATGGGAATCAAAACTATAAAGTGCACTTACAA
ACATCAATTTGTTAGATCTAACAAAATTAATAACCGCACTGTCATCATTG
ACAATAAAACAAACAATTTTCTGTCAAGAGCCTTGTAAACATTCCAACAA
CTTCCATCGAAATGATCTATCACAGCTCAGTCTACCATTTTTAGCGCGGT
CCGATGATTGAGCCCACTGACCTTTATATAACCCTGGACCAAGCAATATC
TGCCATCTTTGATTGGAGTTTTTTTAGAATTGGTACTCAAGGAGAAGCCA
TTGCAATGCTAAAAATTAACGTCTAACGCCGCTACATCATCAAAAGAATT
TGAGGGAAAGTAGACCTAGCTCTCTCGATGCATTTACACCGCTATCGAGT
AGTGCCGACATTAGGGTACCAATTTAAAAAAAAACTCCGATCAAAGATTT
TGCTTGGCTGGGATTGAGAAGCTTTGTCCAGGGTTATATAAAGGTCAGTG
ATTGAGCTGAGAACGCTCCGCGAACTCCTGCGCGGATGAAAAACTTCAAT
CTGTCAATCATTTTCTCAAGCGAAGAGTACGCGAAGCGATTCTAGCTTCA
CGATAGTGCCGCGGGTCATCAATGGATAGCATTCAATTATCATTATCCCT
TTATTTTCATTCCTAGAACTTTTGTTAAAAAAAGGAAAAATAGAAAAGTT
GTATTTTTTACTGTTCTATTCACATACTGAATTTGAAAGATCTTCTATGT
GGCGTTTTTTTGCAAACTTCAAAAAACTGATTTTTGTCCTGCCTTTGCGG
GACTTTGGCTTAAGTGTTTGAGTGCAGCATAGGGTACAAAGCCCAAAGAT
GCATTTCCCGTAATTTTTGTGTGAAGAGTTAGGTCTATACTGCCTTTTGA
AGATTTTTCAAACCCTAAACAGGTTTTTTCCAAATCTACCACTATTTATT
ATATACACACTATTGTATCATTTCATTTGGTTTATCCTACGTTAATAAGA
AAGAAAGTGACTATAAAACCATGTGTATCTGGTCTGAACGTAAAGTTATA
TTATAATGATCATAGCTAGGTCCGCCCTGTTTACAAAAGCGTGTGATCGT
AAAATGCCGGTAGCCGACAAATATAAACAANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNCAAAACTAAACGAGGCACAGTGGGCCTACTTATCGTG
AGGGTGTCAAATACCACGTGTTCAATAATAAAATCAACTTTTATTTGCAA
AAACGGCAATAATTGGCAAAAACGGCAATTTTCATTTATTTACTTTTTTA
TTTTTCTGCTGATTCAGCATTTCATAGTTAAAAAAAATTGCCGTTTTCGG
CAATAATTTCCGAAAAGAGCAATAATTGCAGTTTCTATCTTAAACACCCA
ACTGTCCAGGTATTATCCCAACAGAAAAAATAATGCTTAGCTAAAAGCTG
TGGCCTCTAATTTAGGCTATTTTTCTCCCGAAATTTATCCGGACAATCAA
ATCAACGGCGCATCATGGCTTTGCTATTGGCAAGTTTAGAAAAAAATAAA
TTTATAAGAACTTGGAAATATTGACTTCTCAATGTTTATCTCCTTTAGCT
CCAATTTTGAACTTTTTAGTCGAGGATGAGTGGTTGACTTCTCAATGTTT
ATCCCCTTTAGCTCCAATTTTGAACTTTTTAGTCGAGGATGAGTGGGCGG
GGGTGGGGTTGGTTCTTTAGGCAAGAAAGTGCATGTGTAATCACTTAGAA
GAGNNNNNNNNNNNNNNNNNNNTTCCAGCTGGTTTATTTATTCATTAAGA
TTATTTCTCATACTCGCTCTGCAATAGAATTATTACTTTGCTTTCTGATC
TGTTCTGATTAGTAGTTTGTGGGCAACTTTCTAACACAACTAACTCAATA
AACTCATCTTTCACATCTTTGATCTCTTAAGCCGGAGCTTCCAGCGCAGC
TGGTTTATTATTATTGGTATTGAAGCCTTAGTCACTTTTTCAAAATATCT
CACTCTCAGCAAGAAGAATGCTTTGCCTTTTATGATTTAGATAGCTAATA
TTTATTCACTTTACTTCACTCCCTTTAATTTTCAATCATTGAATTTTTTT
TTTTTGTTTGCAGTGGGTGAAGTGCTGATTCAAGATGATAACAAAAATGT
GTTAGAACGAAACCTTCATAAAATCAAAACACCTCTTCTTCTCATATGGG
GTAAAAACGATAACGTAAGTTAATATATTTTACTCGAGATATTTTTCTTT
TTTATTATCAAACTTAGTGTTAGTTTATCACTTTCTGATATTGTTTTATC
AGACCTACCAGGAGTTTTGTTATGTTTCTACGGTATTGATTGTATCAACC
TGCCCACCAACCTAATATATTGCATCATTAAAAACAAATTATCTATCATT
AACCACACGGTTGCTTCATTCATCTGTGATTTAAATGAATTTTAATTAGG
TAAAAAGGATTCCTTCATATCATACATCGATATAACTTTAATTTGAAAGT
TTCGGAATTTTGTTAGTGTTATGTTTGTTACCATGACGAGCTGAAATTCT
TCAAAGTAAATTCAATTTCAACTTCAGGTTAATACTGCAGTTTAGAACTC
TTGATAAATTTCGTGCTCGCTTCGTTCCATATCACATCTTGATCCGACCA
ACGGATTAGAATAGGTGGATTAAGAACTCATAGAAAACACTCCTCGTTAG
GTTATCAAACTTTTTTACGAGTTTGCTAGCAATTAAAACTTGATAAGTTG
TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNGGAGTGCGCAGAGTCATTTACAGATTTTTC
TTGTAACAATGAGAAGACAATGGATCTCTCTTGGGAGCAACGAGAGAAGT
TAATCCACCTATTCTAATCCGTTGATCCGACCCCCCTGCGAAAAACGTTG
TAAATCGACTAAAATTACTTCGGAAAAAACAAAAAATATTCAGTAGACAC
CCTGTTGATATCTTATCTATTCTGCTAAGGTAATTTCTGGATGATGATAT
CAATTACAACTGGTAATAGTATGACTTTTGATACATTTTTTTACGAACAG
GTTTTGCACCCTGATTGCGTGGAGGTGATCAAGGAGAAGATGAGTGAACC
ACCCAAGACAGTTGCTTTGTTTGAAGATGTTGGGCATGGTGTCTTCTTAG
AACGTCCACGAAAATTCATTTTCACACTCCTCGATTTTCTCAACTCTTTA
GAATGACAGAATAACTGATTGGAATAACGTTGAAAGCTTTTGTCAGTGCC
AAGATAATTTCTGGTACTTTCTGATTATATTACTGATGAAACTGTTCAAA
TACACAAATTTATTTCAACTTGATTCATACCCCAGAACTTACTCAAGTTC
AGTTGAGCTAGATCTATGAATTTTTATCTGCCTTTCTGTATGTGAGTCCC
CTAAAAAGTTTCGGGTGCGAGCTGAGAGAGTTTAATGCAAAACTGAGGCT
TATTCGACTTACTTATCAATTTATAAGTGAGCAGTTATGAGTGATTTAAA
TGATACTTGAAGTTGAAACAAGTTAGATAATAAAAAGACGCACAAAACCA
CCAGTACATTTATCAAACATTTTACAATTATTTTTGGACCTACCTGGAGG
TCCTATAAATTAACCTCTGTCCGTTCGTCCGTCCGTCCGTTCGTCCGTCC
GTCTGTTACCAGCTTTTCTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034914XLOC_034914Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055497-exon-scaffold_253-1575043694:414147..414335TCONS_00055497-exon-scaffold_253-1575043694:414147..414335Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1575043694:413956..414007TCONS_00055497-exon-scaffold_253-1575043694:413956..414007Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1575043694:413423..413605TCONS_00055497-exon-scaffold_253-1575043694:413423..413605Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1575043694:413084..413212TCONS_00055497-exon-scaffold_253-1575043694:413084..413212Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1575043694:412881..412946TCONS_00055497-exon-scaffold_253-1575043694:412881..412946Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1575043694:412579..412664TCONS_00055497-exon-scaffold_253-1575043694:412579..412664Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1575043694:412117..412228TCONS_00055497-exon-scaffold_253-1575043694:412117..412228Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1575043694:411842..411907TCONS_00055497-exon-scaffold_253-1575043694:411842..411907Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1575043694:411581..411660TCONS_00055497-exon-scaffold_253-1575043694:411581..411660Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1575043694:410537..411081TCONS_00055497-exon-scaffold_253-1575043694:410537..411081Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1575043694:409778..410042TCONS_00055497-exon-scaffold_253-1575043694:409778..410042Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1575043694:409185..409512TCONS_00055497-exon-scaffold_253-1575043694:409185..409512Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1575043694:399122..399222TCONS_00055497-exon-scaffold_253-1575043694:399122..399222Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1575043694:397214..397835TCONS_00055497-exon-scaffold_253-1575043694:397214..397835Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1510915933:414147..414335TCONS_00055497-exon-scaffold_253-1510915933:414147..414335Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1510915933:413956..414007TCONS_00055497-exon-scaffold_253-1510915933:413956..414007Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1510915933:413423..413605TCONS_00055497-exon-scaffold_253-1510915933:413423..413605Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1510915933:413084..413212TCONS_00055497-exon-scaffold_253-1510915933:413084..413212Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1510915933:412881..412946TCONS_00055497-exon-scaffold_253-1510915933:412881..412946Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1510915933:412579..412664TCONS_00055497-exon-scaffold_253-1510915933:412579..412664Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1510915933:412117..412228TCONS_00055497-exon-scaffold_253-1510915933:412117..412228Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1510915933:411842..411907TCONS_00055497-exon-scaffold_253-1510915933:411842..411907Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1510915933:411581..411660TCONS_00055497-exon-scaffold_253-1510915933:411581..411660Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1510915933:410537..411081TCONS_00055497-exon-scaffold_253-1510915933:410537..411081Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1510915933:409778..410042TCONS_00055497-exon-scaffold_253-1510915933:409778..410042Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1510915933:409185..409512TCONS_00055497-exon-scaffold_253-1510915933:409185..409512Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1510915933:399122..399222TCONS_00055497-exon-scaffold_253-1510915933:399122..399222Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1510915933:397214..397835TCONS_00055497-exon-scaffold_253-1510915933:397214..397835Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1491911889:414147..414335TCONS_00055497-exon-scaffold_253-1491911889:414147..414335Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1491911889:413956..414007TCONS_00055497-exon-scaffold_253-1491911889:413956..414007Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1491911889:413423..413605TCONS_00055497-exon-scaffold_253-1491911889:413423..413605Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1491911889:413084..413212TCONS_00055497-exon-scaffold_253-1491911889:413084..413212Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1491911889:412881..412946TCONS_00055497-exon-scaffold_253-1491911889:412881..412946Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1491911889:412579..412664TCONS_00055497-exon-scaffold_253-1491911889:412579..412664Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1491911889:412117..412228TCONS_00055497-exon-scaffold_253-1491911889:412117..412228Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1491911889:411842..411907TCONS_00055497-exon-scaffold_253-1491911889:411842..411907Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1491911889:411581..411660TCONS_00055497-exon-scaffold_253-1491911889:411581..411660Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1491911889:410537..411081TCONS_00055497-exon-scaffold_253-1491911889:410537..411081Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1491911889:409778..410042TCONS_00055497-exon-scaffold_253-1491911889:409778..410042Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1491911889:409185..409512TCONS_00055497-exon-scaffold_253-1491911889:409185..409512Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1491911889:399122..399222TCONS_00055497-exon-scaffold_253-1491911889:399122..399222Clytia hemisphaericaexon
TCONS_00055497-exon-scaffold_253-1491911889:397214..397835TCONS_00055497-exon-scaffold_253-1491911889:397214..397835Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:397214..414335 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
41.1541	40.5405	28.8768	28.5917	10.0763	8.13929	12.7952	12.6139	10.2902	7.75211	6.27223	6.61304	4.88755	3.49379	12.9829	13.6799	16.1451	14.711	4.33388	7.63692	9.02738	10.7377	23.2044	20.2122	7.32577	10.3092	8.19037	7.05878	24.7087	20.4804
Blast
[Close]
BLAST of TCONS_00055497 vs. Swiss-Prot (Human)
Match: CSN5 (COP9 signalosome complex subunit 5 OS=Homo sapiens GN=COPS5 PE=1 SV=4)

HSP 1 Score: 520.005 bits (1338), Expect = 9.756e-177
Identity = 255/327 (77.98%), Postives = 289/327 (88.38%), Query Frame = 2 
Query:   62 SEMAKKTFELQNNIETVNTVDEIYKYSQEQQQEILSRKPWTKDPHYFKNIKVSALALLKMVMHARSGGTLEVMGLMLGKVDGDTMIVMDAFALPVEGTETRVNAQAAAYEYMTQYIESSKSVGRLENAIGWYHSHPGYGCWLSGIDVSTQMVNQQFQEPFVAIVIDPTRTISAGKVNMGAFRTYPKGYKPPDESPSEYQTIPLNKIEDFGVHCKQYYSLEVSYFKSALDQKLLDSLWNKYWINTLSSSTLFTNADYVTNQILDLSEKLEQSISQVSRG--MSYAENWDKKDEPGKLQKANKDCCKLNIEALHGLMSQVLKNQLFNNV 1036
            S MA+KT+EL NN++   ++DEIYKY ++QQQEIL+ KPWTKD HYFK  K+SALALLKMVMHARSGG LEVMGLMLGKVDG+TMI+MD+FALPVEGTETRVNAQAAAYEYM  YIE++K VGRLENAIGWYHSHPGYGCWLSGIDVSTQM+NQQFQEPFVA+VIDPTRTISAGKVN+GAFRTYPKGYKPPDE PSEYQTIPLNKIEDFGVHCKQYY+LEVSYFKS+LD+KLL+ LWNKYW+NTLSSS+L TNADY T Q+ DLSEKLEQS +Q+ RG  M   E  D+K E  KL KA +D CK  IEA+HGLMSQV+K++LFN +
Sbjct:    6 SGMAQKTWELANNMQEAQSIDEIYKYDKKQQQEILAAKPWTKDHHYFKYCKISALALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPDEGPSEYQTIPLNKIEDFGVHCKQYYALEVSYFKSSLDRKLLELLWNKYWVNTLSSSSLLTNADYTTGQVFDLSEKLEQSEAQLGRGSFMLGLETHDRKSED-KLAKATRDSCKTTIEAIHGLMSQVIKDKLFNQI 331
The following BLAST results are available for this feature:
BLAST of TCONS_00055497 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CSN59.756e-17777.98COP9 signalosome complex subunit 5 OS=Homo sapiens... [more]
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