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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055188 ID=TCONS_00055188|Name=TCONS_00055188|organism=Clytia hemisphaerica|type=transcript|length=3895bpRun BLAST on NCBI protein sequence of TCONS_00055188-protein >TCONS_00055188-protein ID=TCONS_00055188-protein|Name=TCONS_00055188-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1011bp MKLTDDESYQQQRPESDDEENDEEAFDDFDDYDDDEVEDDHTLLEENITGRun BLAST on NCBI transcript from alignment at scaffold_251:645173..668855+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055188 ID=TCONS_00055188|Name=TCONS_00055188|organism=Clytia hemisphaerica|type=transcript|length=23683bp|location=Sequence derived from alignment at scaffold_251:645173..668855+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_251:645173..668855+ >TCONS_00055188 ID=TCONS_00055188|Name=TCONS_00055188|organism=Clytia hemisphaerica|type=CDS|length=51612bp|location=Sequence derived from alignment at scaffold_251:645173..668855+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055188 vs. Swiss-Prot (Human)
Match: TTLL6 (Tubulin polyglutamylase TTLL6 OS=Homo sapiens GN=TTLL6 PE=1 SV=2) HSP 1 Score: 540.421 bits (1391), Expect = 1.837e-173 Identity = 258/433 (59.58%), Postives = 327/433 (75.52%), Query Frame = 1
Query: 640 LTVALSNCKYECVRRVTRKFGFKEVDEGEDWNLCWTDFSVSLERVINMKCYQKINHFPGMSEICRKDLLARNMNRLWKQFPKDYAIFPRTWCLPADYGDFQTFYRTKKNKTFIMKPDSGSQGKGIYLTRNPKQDIKPEEDLICQQYVCKPFLIDGFKFDLRVYVLVTSCDPLRVFVYNDGLGRFSTVKYEEPNNVNVENIYMHLTNYAIQKFSNEFVRDEETGSKRRLSVVNKWFVENGYDLEKIWHSINDVIIKTLVSAHPILKHNYRTCFPNHTRGSACFEILGFDIILDRKLKPWVLEVNHSPSFTTDSKLDREIKDSLVHDTLVLVNFSQCDXXXXXXXXXXXXXXXLLQXXXXXXXXXXGGESETDNTDILKAYEDSHLGNFRRIYPENNEDIYEPYFTNSCSLFQETAASKARTECARLQREEIKMK 1938
L + LS+C+YE VRR +++GF+E E +DW L WTD+SVSLERV+ MK YQKINHFPGMSEICRKDLLARNM+R+ K FPKD+ FPRTWCLPAD+GD QT+ R++KNKT+I KPDSG QGKGI++TR K +IKP ED+ICQ Y+ KPF+IDGFKFDLR+YVLVTSCDPLR+FVYN+GL RF+T Y P N+++I MHLTNY+I K S+ F RD +GSKR+LS + + ++ Y++E+IW I DVIIKTL+SAHPI++HNY TCFPNHT SACFEILGFDI+LD KLKPW+LEVNHSPSF+TDS+LD+E+KD L++DTLVL+N CD KK V EE R+ + L Q ++ + YE + G FR IYP N + YE +F ++ SLFQ T AS+AR E AR +E+++K
Sbjct: 61 LVINLSSCRYESVRRAAQQYGFREGGEDDDWTLYWTDYSVSLERVMEMKSYQKINHFPGMSEICRKDLLARNMSRMLKMFPKDFRFFPRTWCLPADWGDLQTYSRSRKNKTYICKPDSGCQGKGIFITRTVK-EIKPGEDMICQLYISKPFIIDGFKFDLRIYVLVTSCDPLRIFVYNEGLARFATTSYSRPCTDNLDDICMHLTNYSINKHSSNFSRDAHSGSKRKLSTFSAYLEDHSYNVEQIWRDIEDVIIKTLISAHPIIRHNYHTCFPNHTLNSACFEILGFDILLDHKLKPWLLEVNHSPSFSTDSRLDKEVKDGLLYDTLVLINLESCD-KKKVLEEERQRGQFLQQCCSREMRIEEAKGFRAVQLKKTETYEKENCGGFRLIYPSLNSEKYEKFFQDNNSLFQNTVASRAREEYARQLIQELRLK 491 The following BLAST results are available for this feature:
BLAST of TCONS_00055188 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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