TCONS_00000644 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000644
Unique NameTCONS_00000644
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length797

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000644 ID=TCONS_00000644|Name=TCONS_00000644|organism=Clytia hemisphaerica|type=transcript|length=797bp
gccgggttattttttcataaaccccttcagaagttttgcggcgcatttct
TTGCTTTTGAGTCAAGTAAATGATaaagcgctttcgcagcattaatcttt
gatacccattttggcgggacgctagtgtgactaactgaataTAAATACTA
TTTAAAAGCCTTATTTATAAACTCGCCCATAAAGAGCTTGACATTAATGT
TTcttttaaatataaatatttttctacaAGGTCTTTACACATAATATCCT
GAGGATGTGGCAGAACGCTTGAAAACATAAGCCTTTCTTCTTCAGTAAGA
TAATCATCTTCCACTTGATCCAGCTCAGCAAGCGCACCAACTTCTACCAA
TGCATCATTTGTGACCTCAGTGTGTTGGTCTTCTGCATTGTATTTCTCAG
GAAATGAAAATAGATGGTCAGGGATTCCAGCAGGTAGCATAACATCTTTC
TGTTGTCTTACACGGTGTGAATTCCAGCCCCGAACAAAAACATCAGATTC
TTTTTGGACAACAGGAATAGATATATAGGCAAGAATTTTCCTGTCAAGAT
CATTTAATGGATCATAATCATGATTTATAAGGAGCATTCGCAATTGgtct
ttgatgaatttttcCATTCGTTCGTGAATTTCCTTCCACCAACGTTCAAT
TTTATTTGAAGTGGAGGgaccaaacaaaactgaattCACTGGgtcttcaa
aatttccaaatttatcCATAAGATAAACTTGCATTGTTCCCATGAGTCCA
GTTTCAGTCCCTTTGTCAAGAGTCAAGTATCTAGGAATTTGCCCTGA
Run BLAST on NCBI

protein sequence of TCONS_00000644-protein

>TCONS_00000644-protein ID=TCONS_00000644-protein|Name=TCONS_00000644-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
SGQIPRYLTLDKGTETGLMGTMQVYLMDKFGNFEDPVNSVLFGPSTSNKI
ERWWKEIHERMEKFIKDQLRMLLINHDYDPLNDLDRKILAYISIPVVQKE
SDVFVRGWNSHRVRQQKDVMLPAGIPDHLFSFPEKYNAEDQHTEVTNDAL
VEVGALAELDQVEDDYLTEEERLMFSSVLPHPQDIMCKDLVEKYLYLKET
LMSSSLWASL
Run BLAST on NCBI

transcript from alignment at sc0000002:814437..815233

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000644 ID=TCONS_00000644|Name=TCONS_00000644|organism=Clytia hemisphaerica|type=transcript|length=797bp|location=Sequence derived from alignment at sc0000002:814437..815233 (Clytia hemisphaerica)
TCAGGGCAAATTCCTAGATACTTGACTCTTGACAAAGGGACTGAAACTGG
ACTCATGGGAACAATGCAAGTTTATCTTATGgataaatttggaaattttg
aagacCCAGTGaattcagttttgtttggtcCCTCCACTTCAAATAAAATT
GAACGTTGGTGGAAGGAAATTCACGAACGAATGgaaaaattcatcaaaga
cCAATTGCGAATGCTCCTTATAAATCATGATTATGATCCATTAAATGATC
TTGACAGGAAAATTCTTGCCTATATATCTATTCCTGTTGTCCAAAAAGAA
TCTGATGTTTTTGTTCGGGGCTGGAATTCACACCGTGTAAGACAACAGAA
AGATGTTATGCTACCTGCTGGAATCCCTGACCATCTATTTTCATTTCCTG
AGAAATACAATGCAGAAGACCAACACACTGAGGTCACAAATGATGCATTG
GTAGAAGTTGGTGCGCTTGCTGAGCTGGATCAAGTGGAAGATGATTATCT
TACTGAAGAAGAAAGGCTTATGTTTTCAAGCGTTCTGCCACATCCTCAGG
ATATTATGTGTAAAGACCTtgtagaaaaatatttatatttaaaagAAACA
TTAATGTCAAGCTCTTTATGGGCGAGTTTATAAATAAGGCTTTTAAATAG
TATTTAtattcagttagtcacactagcgtcccgccaaaatgggtatcaaa
gattaatgctgcgaaagcgctttATCATTTACTTGACTCAAAAGCAAaga
aatgcgccgcaaaacttctgaaggggtttatgaaaaaataacccggc

Coding sequence (CDS) from alignment at sc0000002:814437..815233

>TCONS_00000644 ID=TCONS_00000644|Name=TCONS_00000644|organism=Clytia hemisphaerica|type=CDS|length=633bp|location=Sequence derived from alignment at sc0000002:814437..815233 (Clytia hemisphaerica)
TCAGGGCAAATTCCTAGATACTTGACTCTTGACAAAGGGACTGAAACTGG
ACTCATGGGAACAATGCAAGTTTATCTTATGgataaatttggaaattttg
aagacCCAGTGaattcagttttgtttggtcCCTCCACTTCAAATAAAATT
GAACGTTGGTGGAAGGAAATTCACGAACGAATGgaaaaattcatcaaaga
cCAATTGCGAATGCTCCTTATAAATCATGATTATGATCCATTAAATGATC
TTGACAGGAAAATTCTTGCCTATATATCTATTCCTGTTGTCCAAAAAGAA
TCTGATGTTTTTGTTCGGGGCTGGAATTCACACCGTGTAAGACAACAGAA
AGATGTTATGCTACCTGCTGGAATCCCTGACCATCTATTTTCATTTCCTG
AGAAATACAATGCAGAAGACCAACACACTGAGGTCACAAATGATGCATTG
GTAGAAGTTGGTGCGCTTGCTGAGCTGGATCAAGTGGAAGATGATTATCT
TACTGAAGAAGAAAGGCTTATGTTTTCAAGCGTTCTGCCACATCCTCAGG
ATATTATGTGTAAAGACCTtgtagaaaaatatttatatttaaaagAAACA
TTAATGTCAAGCTCTTTATGGGCGAGTTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000390XLOC_000390Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000644-exon-sc0000002-1491911889:814437..815233TCONS_00000644-exon-sc0000002-1491911889:814437..815233Clytia hemisphaericaexon
TCONS_00000644-exon-sc0000002-1510915933:814437..815233TCONS_00000644-exon-sc0000002-1510915933:814437..815233Clytia hemisphaericaexon
TCONS_00000644-exon-sc0000002-1575043694:814437..815233TCONS_00000644-exon-sc0000002-1575043694:814437..815233Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000644-proteinTCONS_00000644-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:814437..815233 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.181009	0.177467	0.344942	0.201151	1.7087	1.80032	1.17061	1.16195	0.559287	1.25958	1.11444	0.483939	0.7223	0.59206	0.207469	0.22136	0.0905885	0.278551	0	0.4027	0	0.0857898	0	0.062895	1.04598	0.948245	0.082733	0.0882949	0.133937	0.136461
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000644 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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