TCONS_00055037 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00055037
Unique Name	TCONS_00055037
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2388

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_248:224270..227889-

transcript sequence

>TCONS_00055037 ID=TCONS_00055037|Name=TCONS_00055037|organism=Clytia hemisphaerica|type=transcript|length=2388bp
GGGTGGAAAGGTGTTGGAAAGGGCGGCCAATGGAGAGGGGAAGAGGGCGA
ACGGAAAAAGACGGCTGTTTATGATTATATCTGGGAAGAAGAGGAGaTGG
CGGATGAGATATGGGACGACCCTACTTCAGCGCATGGCAAGAAGACTGGG
GCGAAAGAGACTACCACGCATGTCTCGATCCATACCCTTCATTTGGACGG
TTTGAGAGAATTGTTCAGACATTTCTTGAAGTTGCCTGATGGTGCTATTG
TGGAGGTTTTCGGTGAAATGAACATCCCCGGAATCGATGAAGGTGTAAAA
CAGGCTCTCATTAAACGTACCACCTTCCAGACGCTcaataacaataacaa
caataacaacaactTACGTAATCGACATTCATCACGTGCAAGCGTATTAT
CCTTACGTAAAGAGAACTTGCAACCACACACGGTTGCCACGGACGAAAGT
GATGGTCTCGGCATGAAGTCATCGCCTGGTGATTATCTTTTGGGAATACC
AGCTGCCAGCTCTCAAGTTTGAACAAGTTGACCTTGTTTTTATGTTGCAC
ATTATGATATTACCCCAGTCTTCGTCCACTTTGAGTATGAACAAAATGGA
TAAGACAAAACCTGACAAAAAAAGGTTCATATAACGTCAGTTGAATGTTG
AAAAGACGTTGTGGACAAGTTAAGTTAGAAGCAAGCAAATGAGACTATTC
TTTTGGTTAGATATGACGTACATTTCCATATGATCTCCATTGACATACAA
GTCTAAGactagactggcacgccagtcgggctggaacggtatcaggcggg
aaaagtgagcgtaggagttaggtaagcataggaagaaattttgtcggcgg
caagggctctcaccaacttttgctcgcgttctcctacgcagctcctattc
tagcaaacgcccacCGCTTTTATGTTCctgccctctgacatgattaatta
acagactagtttgctagtcaaGTCTAAGACTTGAAACAGGGAAGTAAAGG
AAACATTACAATTAAAACTAAGGGggttatttatattttaaatttcatgc
ATGTTTCACTATAGCGACTCTCAGAGTTTTTAAGCGCCCTGTCAAATCTA
CTTTTGCTTTATTCTTGAACCTTAATCGATAATAATCATCCTTCCTTCCA
TCTGTTAGGGAATTTGAGTTTGCGAcccttttttttatattttaatatat
tttaatgGATGTTaatgattttattatttaaCTTAATTATTATTTTACGA
GAAAGTTATTTTAAATGACTTTAATCCtgacattttttattatttttaaa
aactgaaattattgttattattattaaccAGTTTTATTTTGAGACTTTTA
CAAAACTGAAGTTATCACGTAAGGTGTCACGAAAGTGCATGCTTGTTTTG
TTATAAAACAATCTGGAAAATCGAATTGCCTGCTTTTTTCTGAGATTTTC
AAAAGCCTTCATGATgttttttcacttgcgaattttgtaatatttttgat
gtaaattttttaatatcGGTGTAAAGTTGAGTATAATTATaatattgatt
attttttaagtaTCGGATATTGTTATGcacttttatgtttttaatggTGG
GACCGAATTATTATATGTATTATATGAATGGGAAAGAAATTTaactctag
tttagacggtctAATTTTCGGTCTGTCTATTCTAATTTTAAATTAAagtg
ggcagaaagttggctgtctaaagtcaatacGTTGCTATCTTTTGAAGTCA
ATGTAATGACTTCAATTTTGGGCACTCAACAAAAAATTTGGTCGATTGCT
CGAATGCCTTAAAAATTTGCCGGCAACTTCTACGTAAGTAATAATTATAA
CAAGCGTCCTATATTCGCGGAATTGATTATATAAAAAGAACGATTTCACG
ATTGAGGTATAGGTATAAGAGAGTGTCCCACTGACTAAgtgcgaaaataa
aaaaatgtagtgtttccggaaaccggccgggtgaaaacataaaattttct
gacccggccgcagactatgggttcatctatatggttcatcataaagaaaa
tcaagttgaccgtgttcaagctatcaaacgtcgtttggttagatattccc
gcttgtaaatcaaattttgtttgttagtagttgatacattagaaTTCAGG
GCTTACtgcatactgtttgtacataaaaattatctttaaagttatatttc
aatgattttaagttttcaaaaaaagcaacaaacaaaatttttccgaccgg
ccgcatgagagcttttttcattcacccgcattccggaaacacagATTTTT
TAACTAATTTATATTTATGTAATAAGAAgatgattttggaaaattgagaT
TATAACACAAACTCTGTAAAAAGACAATAACATTAAAC

Run BLAST on NCBI

transcript from alignment at scaffold_248:224270..227889-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00055037 ID=TCONS_00055037|Name=TCONS_00055037|organism=Clytia hemisphaerica|type=transcript|length=3620bp|location=Sequence derived from alignment at scaffold_248:224270..227889- (Clytia hemisphaerica)
GGGTGGAAAGGTGTTGGAAAGGGCGGCCAATGGAGAGGGGAAGAGGGCGA
ACGGAAAAAGACGGCTGTTTATGATTATATCTGGGAAGAAGAGGAGGTTT
GTTTTCTTGAATTACACACTTCCTAAGTGAGGGTGGAAAGGTGTAGGAAA
GGGCGGGCAATAGACAATGAGGCTTGGAAAAGAAAAATTGTGATTGTTGG
CCTCTAATTCATATTCTCCTCCCGTTTTTCTATTTTTGAGGGTGAGGGTG
AGGGTGAGGGTGAGGGTGAGGGTGAGGGTGAGGGTGAGGGTGAGGGTGAG
GGTGAGGGTGAGGGTGAGGGGCGAGAGGTATCTATGAAAAAGGGTGATTA
TTTATTAAAATCTGTATATCAGAGAACTATACATGGAAAGACTCGAATTT
TTTTTATCAAAATTGTTGAATTTTATATCGAACAGAAAAGAAGAGACACT
AACTGTCTGTCAAAGACTCAAATATGGCTTCCACCCTACACAAACAAAAA
CTAAACTCCACTATTTTTTGATAGCCTATTTCTCACTTTTTTTAAGATGG
CGGATGAGATATGGGACGACCCTACTTCAGCGCATGGCAAGAAGACTGGG
GCGAAAGAGACTACCACGCATGTCTCGATCCATACCCTTCATTTGGACGG
TTTGAGAGAATTGTTCAGACATTTCTTGAAGTTGCCTGATGGTGCTATTG
TGGAGGTGAGAGCATTTTTAAATCATCGAATCTCTTGACTTGATCTCCTT
TATATAAAATGGGGCGCAAACCGGCCAACATGTTTGCCAACATTTTTGAA
CCAACATATCGGCCAACATGTTGGTACGGATTGCGGTCCTGCATTAAAAA
AAACAAACAAAAAAACAAGCAGCCAACATTACGAAATGTTCATTCATTTG
TTTTTGACTACCAATGAAGGGGACAAGCTGGAGTTTTTACAAGCTCTTAT
TTGATTTGGTTGGTCGTTAAGATGTAATAAAAGAATCTTATTACTTTTTC
TAAAGAACGCGTCATCTCTATCACTTTAAATGATCAATTAGTGTAAAAAC
TCCAAGGCATCTCCAATGAAAAAGCATTCGAAAAAAAGTAAAAATAACGC
TCGAAAACTAAAATGTTGGTCGAAATGTTGGCCATGTTGGTTACCTAGCG
CAAAACGACAAACATGCCAATTTTGGCGGAAATGTTGGCCAACATTTATT
AAATATTTAATAAATGTTGGCCAACATTTTTTGAGATTTCTTTCTTCTCG
AGCATGTTGGCGCCTACCGCAAACCGGCCAACATTGTTTACACGGTTTGC
GCTCCACTTAAATAACTTGACCACAAATTTTCGACACTCATTTTGGAGTA
GTCATTGATATTTTTGAGGTATAGTCGAAAAGGGGGTTTAGATTGACGTA
CTCATTCATTACTTTCAATATAGCTTATCAATATCTCTTTATATGCAAAC
CACATTGTCTAAACAATCTTAATCTTCTTTTTCTCAGGTTTTCGGTGAAA
TGAACATCCCCGGAATCGATGAAGGTGTAAAACAGGCTCTCATTAAACGT
ACCACCTTCCAGACGCTCAATAACAATAACAACAATAACAACAACTTACG
TAATCGACATTCATCACGTGCAAGCGTATTATCCTTACGTAAAGAGAACT
TGCAACCACACACGGTTGCCACGGACGAAAGTGATGGTCTCGGCATGAAG
TCATCGCCTGGTGATTATCTTTTGGGAATACCAGCTGCCAGCTCTCAAGT
TTGAACAAGTTGACCTTGTTTTTATGTTGCACATTATGATATTACCCCAG
TCTTCGTCCACTTTGAGTATGAACAAAATGGATAAGACAAAACCTGACAA
AAAAAGGTTCATATAACGTCAGTTGAATGTTGAAAAGACGTTGTGGACAA
GTTAAGTTAGAAGCAAGCAAATGAGACTATTCTTTTGGTTAGATATGACG
TACATTTCCATATGATCTCCATTGACATACAAGTCTAAGACTAGACTGGC
ACGCCAGTCGGGCTGGAACGGTATCAGGCGGGAAAAGTGAGCGTAGGAGT
TAGGTAAGCATAGGAAGAAATTTTGTCGGCGGCAAGGGCTCTCACCAACT
TTTGCTCGCGTTCTCCTACGCAGCTCCTATTCTAGCAAACGCCCACCGCT
TTTATGTTCCTGCCCTCTGACATGATTAATTAACAGACTAGTTTGCTAGT
CAAGTCTAAGACTTGAAACAGGGAAGTAAAGGAAACATTACAATTAAAAC
TAAGGGGGTTATTTATATTTTAAATTTCATGCATGTTTCACTATAGCGAC
TCTCAGAGTTTTTAAGCGCCCTGTCAAATCTACTTTTGCTTTATTCTTGA
ACCTTAATCGATAATAATCATCCTTCCTTCCATCTGTTAGGGAATTTGAG
TTTGCGACCCTTTTTTTTATATTTTAATATATTTTAATGGATGTTAATGA
TTTTATTATTTAACTTAATTATTATTTTACGAGAAAGTTATTTTAAATGA
CTTTAATCCTGACATTTTTTATTATTTTTAAAAACTGAAATTATTGTTAT
TATTATTAACCAGTTTTATTTTGAGACTTTTACAAAACTGAAGTTATCAC
GTAAGGTGTCACGAAAGTGCATGCTTGTTTTGTTATAAAACAATCTGGAA
AATCGAATTGCCTGCTTTTTTCTGAGATTTTCAAAAGCCTTCATGATGTT
TTTTCACTTGCGAATTTTGTAATATTTTTGATGTAAATTTTTTAATATCG
GTGTAAAGTTGAGTATAATTATAATATTGATTATTTTTTAAGTATCGGAT
ATTGTTATGCACTTTTATGTTTTTAATGGTGGGACCGAATTATTATATGT
ATTATATGAATGGGAAAGAAATTTAACTCTAGTTTAGACGGTCTAATTTT
CGGTCTGTCTATTCTAATTTTAAATTAAAGTGGGCAGAAAGTTGGCTGTC
TAAAGTCAATACGTTGCTATCTTTTGAAGTCAATGTAATGACTTCAATTT
TGGGCACTCAACAAAAAATTTGGTCGATTGCTCGAATGCCTTAAAAATTT
GCCGGCAACTTCTACGTAAGTAATAATTATAACAAGCGTCCTATATTCGC
GGAATTGATTATATAAAAAGAACGATTTCACGATTGAGGTATAGGTATAA
GAGAGTGTCCCACTGACTAAGTGCGAAAATAAAAAAATGTAGTGTTTCCG
GAAACCGGCCGGGTGAAAACATAAAATTTTCTGACCCGGCCGCAGACTAT
GGGTTCATCTATATGGTTCATCATAAAGAAAATCAAGTTGACCGTGTTCA
AGCTATCAAACGTCGTTTGGTTAGATATTCCCGCTTGTAAATCAAATTTT
GTTTGTTAGTAGTTGATACATTAGAATTCAGGGCTTACTGCATACTGTTT
GTACATAAAAATTATCTTTAAAGTTATATTTCAATGATTTTAAGTTTTCA
AAAAAAGCAACAAACAAAATTTTTCCGACCGGCCGCATGAGAGCTTTTTT
CATTCACCCGCATTCCGGAAACACAGATTTTTTAACTAATTTATATTTAT
GTAATAAGAAGATGATTTTGGAAAATTGAGATTATAACACAAACTCTGTA
AAAAGACAATAACATTAAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_034668	XLOC_034668	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00055037-exon-scaffold_248-1575043694:227794..227889	TCONS_00055037-exon-scaffold_248-1575043694:227794..227889	Clytia hemisphaerica	exon
TCONS_00055037-exon-scaffold_248-1575043694:227185..227343	TCONS_00055037-exon-scaffold_248-1575043694:227185..227343	Clytia hemisphaerica	exon
TCONS_00055037-exon-scaffold_248-1575043694:224270..226402	TCONS_00055037-exon-scaffold_248-1575043694:224270..226402	Clytia hemisphaerica	exon
TCONS_00055037-exon-scaffold_248-1510915933:227794..227889	TCONS_00055037-exon-scaffold_248-1510915933:227794..227889	Clytia hemisphaerica	exon
TCONS_00055037-exon-scaffold_248-1510915933:227185..227343	TCONS_00055037-exon-scaffold_248-1510915933:227185..227343	Clytia hemisphaerica	exon
TCONS_00055037-exon-scaffold_248-1510915933:224270..226402	TCONS_00055037-exon-scaffold_248-1510915933:224270..226402	Clytia hemisphaerica	exon
TCONS_00055037-exon-scaffold_248-1491911889:227794..227889	TCONS_00055037-exon-scaffold_248-1491911889:227794..227889	Clytia hemisphaerica	exon
TCONS_00055037-exon-scaffold_248-1491911889:227185..227343	TCONS_00055037-exon-scaffold_248-1491911889:227185..227343	Clytia hemisphaerica	exon
TCONS_00055037-exon-scaffold_248-1491911889:224270..226402	TCONS_00055037-exon-scaffold_248-1491911889:224270..226402	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_248	supercontig	scaffold_248:224270..227889 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0299753	0.0508069	0	0	0	0	0.0127194	0.0149168	0.0152654	0	0	0	0	0	0	0	0	0.0163106	0	0.0260462	0	0	0	0	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00055037 vs. Swiss-Prot (Human)

BLAST of TCONS_00055037 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00055037 (transcript) - C. hemisphaerica