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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054994 ID=TCONS_00054994|Name=TCONS_00054994|organism=Clytia hemisphaerica|type=transcript|length=4506bpRun BLAST on NCBI protein sequence of TCONS_00054994-protein >TCONS_00054994-protein ID=TCONS_00054994-protein|Name=TCONS_00054994-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1065bp MTGSTINKRLNPKMESIQPVTHCPKLDLKTKALEDQNMKKRGRKRKRITCRun BLAST on NCBI transcript from alignment at scaffold_248:204643..211987+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054994 ID=TCONS_00054994|Name=TCONS_00054994|organism=Clytia hemisphaerica|type=transcript|length=7345bp|location=Sequence derived from alignment at scaffold_248:204643..211987+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_248:204643..211987+ >TCONS_00054994 ID=TCONS_00054994|Name=TCONS_00054994|organism=Clytia hemisphaerica|type=CDS|length=35178bp|location=Sequence derived from alignment at scaffold_248:204643..211987+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00054994 vs. Swiss-Prot (Human)
Match: G2E3 (G2/M phase-specific E3 ubiquitin-protein ligase OS=Homo sapiens GN=G2E3 PE=1 SV=1) HSP 1 Score: 219.55 bits (558), Expect = 4.207e-59 Identity = 107/238 (44.96%), Postives = 144/238 (60.50%), Query Frame = 2
Query: 317 NIAAHQFCLLFSAGLPQAGEDNEGFEGFLVADILKEVQRVSKLICKFCGRNGANLGCCVQHCRSIYHFNCGYKEGLQFQFCGSFDTYCHVHRSHQDLSLVRTKPKHQFCPICLENFSSVPLVSSETVLKTPCCNNVFVHKECVQRQASVAG-YFFRCPCCNNKDEFGDEMAKYGIYIPSRDAAWE-ESNAYNDLLQEYDKCDFNNCSCTRGRKYSTQAGKWHLLRCYLCGQSAVHVKC 1024
N+ H +CLL S+G+ Q G++ EG GFL+ DI KEV R SKL C C +NGA++GC C+ YHF CG + FQF G+F ++C HR Q ++ + C ICLE +P S +L++PCC N + H++C+Q QA AG +FFRC CNN D F EM + GI+IP +DA+WE E NAY +LLQ Y++CD C C GR Y+ KW + RC CG S H+ C
Sbjct: 37 NLTVHYYCLLMSSGIWQRGKEEEGVYGFLIEDIRKEVNRASKLKCCVCKKNGASIGCVAPRCKRSYHFPCGLQRECIFQFTGNFASFCWDHRPVQIITSNNYRESLP-CTICLEFIEPIP---SYNILRSPCCKNAWFHRDCLQVQAINAGVFFFRCTICNNSDIFQKEMLRMGIHIPEKDASWELEENAYQELLQHYERCDVRRCRCKEGRDYNAPDSKWEIKRCQCCGSSGTHLAC 270 The following BLAST results are available for this feature:
BLAST of TCONS_00054994 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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