TCONS_00054977 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054977
Unique NameTCONS_00054977
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length968

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054977 ID=TCONS_00054977|Name=TCONS_00054977|organism=Clytia hemisphaerica|type=transcript|length=968bp
TTattatttcttttcttataaattgaataaaattaggatttttggaaata
atataaattttagacATAAATAAACGATTTATTCTAAAGTAATTGCGTAG
TTTTTACCCCCGTCTAAGAAACTTTCGATCGGCGTAAAGCAtgtcataaa
ttttaaaatcattccTTTCACCAAACCATCGCAGAGAAGAGCAGCCACGA
AAGCTCCAAAGTTCTCAAAATGGTCGCACAAAAGCCAAGAAAATCCAAGA
AGAAGTCTACTCTCATCTTCAACATTGATTGCTCCCTTCCAGTTGAAGAT
GGAATCATGAAAGTTGATGACTTGaaaacCTTCTTGTCGAGCAAGATTAA
AGTTGAAGGAAAATTGAACAACTTAGAACAAATCAGTTTAGATgtcaata
aaaacaaagttaccATTACTGCTGACCGACAGTTTTCAAAACGTTACTTG
AAGTACTTGACCAAGAAATACTTGAAGAAAAACAACCTTCGTGACTGGCT
TCGAGTTGTGGCTTCAACACACACCGACTACGAATTGAGATACTTCCAAA
TCAACAATGATGAAGAGGAAGACGACGATGATAATGAATAAATTAAAGAT
CTTTATTTAAGACAACAAAAGATTGTTTTCTTTCATGTCTCCAGATACAC
ACACTATAATCTCAGTTTTATGNATTATTTATGACAACAAAAGATTGTTT
TCTTTCATGTCTCAGATACACACACTATAATCTCAGTTTTATGCTGTAAT
CCTGGGAACATCTAGGTTAGAGTctactgaactttgctttctaacGATTT
TAATGGGAGGTCTGATAACACACAGAATACTTCAGATAATGATGAGAGCA
TGAAGGTTGGCAGGGTTGATCCTTGGAGGTTTTAAAACTTGATTTAAAGC
AAGGAAACTTtctggagaaaaacaaataaaactcGGATCTAAAGACCTTT
TTCTTTCATATGTGGGAg
Run BLAST on NCBI

protein sequence of TCONS_00054977-protein

>TCONS_00054977-protein ID=TCONS_00054977-protein|Name=TCONS_00054977-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MVAQKPRKSKKKSTLIFNIDCSLPVEDGIMKVDDLKTFLSSKIKVEGKLN
NLEQISLDVNKNKVTITADRQFSKRYLKYLTKKYLKKNNLRDWLRVVAST
HTDYELRYFQINNDEEEDDDDNE
Run BLAST on NCBI

transcript from alignment at scaffold_247:273341..276781-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054977 ID=TCONS_00054977|Name=TCONS_00054977|organism=Clytia hemisphaerica|type=transcript|length=3441bp|location=Sequence derived from alignment at scaffold_247:273341..276781- (Clytia hemisphaerica)
TTATTATTTCTTTTCTTATAAATTGAATAAAATTAGGATTTTTGGAAATA
ATATAAATTTTAGACATAAATAAACGATTTATTCTAAAGTAATTGCGTAG
TTTTTACCCCCGTCTAAGAAACTTTCGATCGGCGTAAAGCATGTCATAAA
TTTTAAAATCATTCCTTTCACCAAACCATCGCAGAGAAGAGCAGCCACGA
AAGCTCCAAAGTTCTCAAAATGGTCGCACAAGTAAGTTAACTTCCAGCAT
TTTCTCTTTGATTAACATACCTTGAAATTTGTTTGGGATTGTGAAGGATG
TGATGAATATTCTTTTTTCCCCATCTTATCGACTGTGGTGAAAAACATTG
CTGAATTATAAGCCAGATATTCTGATCCTGTCCCCTAAGCTAAGTTTCAA
GAGCTTTACTTTTCCATTCTTGAGTGGATATGATGTCTTATCTTTTTTCC
CCAGCTTATCGATTATGCTGATTAATGCTGTAATAAAAAGCCAAATTTTC
TCTTTGATTTACATACCTTGAAATTTGTTTGGAATTGTGAAGGATGTGAT
GAATGTTCTTTTTTCCCCATCTTATCGACTGTGGTGAAAAACATTGCTGA
ATTATAAGCCAGATATTCTGATCCTGTCACCTAAGTTTCAAGAACTTCAG
TGCTGCAAATAACGGCTGGTGACCGGTAATTACCGGTCATTTTGTAGTTT
CTACCGGTCATTCTGAGGCTCAGTTTTTCATTTTGTCCGGTTAAAATTTG
AAGATTAGANCTTTACTTTTCCATTCTTGAGTGGATATGATGTTTATCTT
TTTTCCCCAGCTTATCGACTATGCTGATTAATGCTGTAATAAAAAGCCAA
CTTTTCTGATCCATCCATGACATAAATTTAGGTCTTAGAGTTTGTTCGGT
CATGTTAATGTTGGATTATAAACTCGAGCAAGACAACAATCCTCCTGAAC
AAACCATAGATTTTTTGTCTTTTTGCGTTAAGCTTTTCCAAGCAAAAGGA
AGTGAATATCGTAAAAAAGAAATGAATATTGCAAAAATGTTTGCTAGCAT
GCTAGGTTTTCGAAAACTTGTAAAACTTCTTATTGGTCAAGCGCTGAAAT
TGTAATGTCATGTGACCTGATGATAGGAGCTCTTACCAAACCACAGCACA
CTTTTCAGCAAAGCATGTCATCTACGGGTTATCTTTAGAATGGCTAAGTA
AGATAGGTTTCTTGCTTTATAAGAAACTGCATATTGTATTGATTTAATTT
TAGTGTTGCCAATGATGACTAGCACAGGCTAGATTTGCTAATCCCAGCTC
TCTGAGAACATTCTGATGAGAAAAGCAACTGAGGCAATTTCTTGATATTA
TTTTGTTCTCTGAAACCATGTTGTTTATATGAGGTGGTTGTAAAGAAATG
TTTTTCCTGTTTAGAAGCCAAGAAAATCCAAGAAGAAGTCTACTCTCATC
TTCAACATTGATTGCTCCCTTCCAGTTGAAGATGGAATCATGAAAGTTGA
TGACTTGGTAAGTTTACATTATAAGTGTGTATTTTGAATTTGAAAACTGC
ACTTTCTGAAGCTTTTCAAAAAGGCTTTGATTTAGTGGTTATGGGGAAAG
TCAAATGGTTTTTGCATGACTTTTGAAGTCTACTTTGTTCACTACATGCA
CATACTGCCTTTCTCTGCTTAATCATGAGCAGACTATTCTAAACATTTTC
ATCTTAGGGTCACCTTCCCTAAGAAATATGGCATTCGCCATTTCTTTTAT
TTTAGAAAACCTTCTTGTCGAGCAAGATTAAAGTTGAAGGAAAATTGAAC
AACTTAGAACAAATCAGTTTAGATGTCAATAAAAACAAAGTTACCATTAC
TGCTGACCGACAGTTTTCAAAACGGTAAGATGAATTTTATTCATAAGGAA
AACTATTTCTATTTATGCATTCATATTATATATCCTGGGCTTAATTCATG
TGAGATGATGATTTCATGAACCACAGACCTGTTCTGAATTTCCGTGTGGA
CAGAGTTCATGCACCACCAACTGATCACATAGTTCTGAAAGAACGAAACA
AATTGAATTTCCTGTTTAAAATAAGACTGATTGGTATGAAATACCTCAAG
GGGCTGGATTATGCTATTTTCTGAATCGCCTAAAATAAGGAAAGACTTGT
AAGGGAACAAAAACTTTCGAATTTATTATTGGCATTGGGCTGATACAGGG
GTGGGGGTCCAAATACATACTGATAAAAAAAAACAAGTATTGGGACATCT
TTTCAGTCATTTCTTTCTTATTCCGTCCACAAACTACACTGAAAGCATAT
AATTCACTCTTAGGTGCCAAATAAACGGGGGTTGGAAAAATGTTTCAAAT
TAAATATACTGGAGGTTGGAAATCGACCTTAAAAAGCCCTAAAAAGGGTC
AATAGACAAAATTTTAGGCTTTTTTAGAGTAAAACAAGGAACTTTCCTTT
TGGTAGCTGAAAATTTTTTCAAAAATTAATAAACGGGAGTCCTAATAAGG
TCCGGGGAAGTTTTATTTGGCACCTAAGAGTGACTTGCTTTCACCTGTGC
AACTTACAATATATCATTTCCGTCTTGCCAGTAAGAGAGATTTTGGTTCA
AATGACCATCTAGTCCTTAGGTTTCCGACCATATTCACAAAACCTACTCT
CAGGTACCTTCCCCCCTCCCCCATTAATTAATTTTTCAAAAGTTTTACAA
CTATCAAGCAAATTGAGCCTATTTTTATGTCTTAATTAAAAAGTGAGATG
ATGATTTCATGAACCACAGACCTGTTCTGAATATCCATGTGGACAGAGTT
CATGCACCACCAACTGATCATTTAAACAACTTTGATGCCTAAATCTGACA
AAAGAGGCTTGTTAGCAGATTACTTTTGAAGACTTTCTCATTAAACATGT
TTCTATTCCTTTTTAGTTACTTGAAGTACTTGACCAAGAAATACTTGAAG
AAAAACAACCTTCGTGACTGGCTTCGAGTTGTGGCTTCAACACACACCGA
CTACGAATTGAGATACTTCCAAATCAACAATGATGAAGAGGAAGACGACG
ATGATAATGAATAAATTAAAGATCTTTATTTAAGACAACAAAAGATTGTT
TTCTTTCATGTCTCCAGATACACACACTATAATCTCAGTTTTATGNATTA
TTTATGACAACAAAAGATTGTTTTCTTTCATGTCTCAGATACACACACTA
TAATCTCAGTTTTATGCTGTAATCCTGGGAACATCTAGGTTAGAGTCTAC
TGAACTTTGCTTTCTAACGATTTTAATGGGAGGTCTGATAACACACAGAA
TACTTCAGATAATGATGAGAGCATGAAGGTTGGCAGGGTTGATCCTTGGA
GGTTTTAAAACTTGATTTAAAGCAAGGAAACTTTCTGGAGAAAAACAAAT
AAAACTCGGATCTAAAGACCTTTTTCTTTCATATGTGGGAG

Coding sequence (CDS) from alignment at scaffold_247:273341..276781-

>TCONS_00054977 ID=TCONS_00054977|Name=TCONS_00054977|organism=Clytia hemisphaerica|type=CDS|length=1488bp|location=Sequence derived from alignment at scaffold_247:273341..276781- (Clytia hemisphaerica)
TTACTTGAAGTACTTGACCAAGAAATACTTGAAGAAAAACAACCTTCGTG
ACTGGCTTCGAGTTGTGGCTTCAACACACACCGACTACGAATTGAGATAC
TTCCAAATCAACAATGATGAAGAGGAAGACGACGATGATAATGAATAAAA
AACCTTCTTGTCGAGCAAGATTAAAGTTGAAGGAAAATTGAACAACTTAG
AACAAATCAGTTTAGATGTCAATAAAAACAAAGTTACCATTACTGCTGAC
CGACAGTTTTCAAAACGAAGCCAAGAAAATCCAAGAAGAAGTCTACTCTC
ATCTTCAACATTGATTGCTCCCTTCCAGTTGAAGATGGAATCATGAAAGT
TGATGACTTGATGGTCGCACAATTACTTGAAGTACTTGACCAAGAAATAC
TTGAAGAAAAACAACCTTCGTGACTGGCTTCGAGTTGTGGCTTCAACACA
CACCGACTACGAATTGAGATACTTCCAAATCAACAATGATGAAGAGGAAG
ACGACGATGATAATGAATAAAAAACCTTCTTGTCGAGCAAGATTAAAGTT
GAAGGAAAATTGAACAACTTAGAACAAATCAGTTTAGATGTCAATAAAAA
CAAAGTTACCATTACTGCTGACCGACAGTTTTCAAAACGAAGCCAAGAAA
ATCCAAGAAGAAGTCTACTCTCATCTTCAACATTGATTGCTCCCTTCCAG
TTGAAGATGGAATCATGAAAGTTGATGACTTGATGGTCGCACAATTACTT
GAAGTACTTGACCAAGAAATACTTGAAGAAAAACAACCTTCGTGACTGGC
TTCGAGTTGTGGCTTCAACACACACCGACTACGAATTGAGATACTTCCAA
ATCAACAATGATGAAGAGGAAGACGACGATGATAATGAATAAAAAACCTT
CTTGTCGAGCAAGATTAAAGTTGAAGGAAAATTGAACAACTTAGAACAAA
TCAGTTTAGATGTCAATAAAAACAAAGTTACCATTACTGCTGACCGACAG
TTTTCAAAACGAAGCCAAGAAAATCCAAGAAGAAGTCTACTCTCATCTTC
AACATTGATTGCTCCCTTCCAGTTGAAGATGGAATCATGAAAGTTGATGA
CTTGATGGTCGCACAATTACTTGAAGTACTTGACCAAGAAATACTTGAAG
AAAAACAACCTTCGTGACTGGCTTCGAGTTGTGGCTTCAACACACACCGA
CTACGAATTGAGATACTTCCAAATCAACAATGATGAAGAGGAAGACGACG
ATGATAATGAATAAAAAACCTTCTTGTCGAGCAAGATTAAAGTTGAAGGA
AAATTGAACAACTTAGAACAAATCAGTTTAGATGTCAATAAAAACAAAGT
TACCATTACTGCTGACCGACAGTTTTCAAAACGAAGCCAAGAAAATCCAA
GAAGAAGTCTACTCTCATCTTCAACATTGATTGCTCCCTTCCAGTTGAAG
ATGGAATCATGAAAGTTGATGACTTGATGGTCGCACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034640XLOC_034640Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054977-exon-scaffold_247-1575043694:276551..276781TCONS_00054977-exon-scaffold_247-1575043694:276551..276781Clytia hemisphaericaexon
TCONS_00054977-exon-scaffold_247-1575043694:275275..275367TCONS_00054977-exon-scaffold_247-1575043694:275275..275367Clytia hemisphaericaexon
TCONS_00054977-exon-scaffold_247-1575043694:274908..275026TCONS_00054977-exon-scaffold_247-1575043694:274908..275026Clytia hemisphaericaexon
TCONS_00054977-exon-scaffold_247-1575043694:273341..273865TCONS_00054977-exon-scaffold_247-1575043694:273341..273865Clytia hemisphaericaexon
TCONS_00054977-exon-scaffold_247-1510915933:276551..276781TCONS_00054977-exon-scaffold_247-1510915933:276551..276781Clytia hemisphaericaexon
TCONS_00054977-exon-scaffold_247-1510915933:275275..275367TCONS_00054977-exon-scaffold_247-1510915933:275275..275367Clytia hemisphaericaexon
TCONS_00054977-exon-scaffold_247-1510915933:274908..275026TCONS_00054977-exon-scaffold_247-1510915933:274908..275026Clytia hemisphaericaexon
TCONS_00054977-exon-scaffold_247-1510915933:273341..273865TCONS_00054977-exon-scaffold_247-1510915933:273341..273865Clytia hemisphaericaexon
TCONS_00054977-exon-scaffold_247-1491911889:276551..276781TCONS_00054977-exon-scaffold_247-1491911889:276551..276781Clytia hemisphaericaexon
TCONS_00054977-exon-scaffold_247-1491911889:275275..275367TCONS_00054977-exon-scaffold_247-1491911889:275275..275367Clytia hemisphaericaexon
TCONS_00054977-exon-scaffold_247-1491911889:274908..275026TCONS_00054977-exon-scaffold_247-1491911889:274908..275026Clytia hemisphaericaexon
TCONS_00054977-exon-scaffold_247-1491911889:273341..273865TCONS_00054977-exon-scaffold_247-1491911889:273341..273865Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054977-proteinTCONS_00054977-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_247supercontigscaffold_247:273341..276781 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
591.022	545.958	684.507	776.418	587.298	505.372	577.862	597.075	757.772	509.652	791.192	923.805	965.798	911.302	1165.24	1035.86	1080.81	1195.74	649.521	709.285	1328.56	1229.21	896.679	869.112	1058.85	1135.77	1181.64	1302.85	714.916	692.751
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002671Ribosomal_L22e
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
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BLAST of TCONS_00054977 vs. Swiss-Prot (Human)
Match: RL22L (60S ribosomal protein L22-like 1 OS=Homo sapiens GN=RPL22L1 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 3.655e-21
Identity = 67/112 (59.82%), Postives = 81/112 (72.32%), Query Frame = 1 
Query:  220 MVAQKPRKSKKKSTLIFNIDCSLPVEDGIMKVDDLKTFLSSKIKVEGKLNNLEQ-ISLDVNKNKVTITADRQFSXXXXXXXXXXXXXXXXXXDWLRVVASTHTDYELRYFQI 552
            M  QK RK K+ ST  FN+D + PVEDGI    + + FL  K+KV GK  NL   + ++  KNK+T+ +++QFSKRYLKYLTKKYLKKNNLRDWLRVVAS    YELRYFQI
Sbjct:    1 MAPQKDRKPKR-STWRFNLDLTHPVEDGIFDSGNFEQFLREKVKVNGKTGNLGNVVHIERFKNKITVVSEKQFSKRYLKYLTKKYLKKNNLRDWLRVVASDKETYELRYFQI 111
The following BLAST results are available for this feature:
BLAST of TCONS_00054977 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL22L3.655e-2159.8260S ribosomal protein L22-like 1 OS=Homo sapiens G... [more]
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