TCONS_00005472 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005472
Unique NameTCONS_00005472
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length864

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005472 ID=TCONS_00005472|Name=TCONS_00005472|organism=Clytia hemisphaerica|type=transcript|length=864bp
CATTCTCACTAAAAGTGTTCGTTTTGATATTCTTCAAGAAAGATGAAACT
AATTGACAAATTTTCTGGAACATTTCGTCCTCGTTTTCTGACTTGCACGT
CAAATCGAGAAGGATTTCAATACTTTGTGTTGCTAGAGTTGCTTCTGTCT
CTAGCTCTTtgatttgtttattatttttctgGCTTTCTCGAGTCTTCTCT
CGTTCTAACGATTTCGAATGTTCTTTAGCTAACAAAACTTCTTTTTCaag
ttctttgattttttcagccatttgtTTTTTACTCTCTCGATATCTTTTCA
CAGCTTTGTTATTGCGATTTTTTAAAGCCAATTTCTGCCAAATACTTTGA
TGTTTCTTTTCATCTGGGCTTAAATTATCAGCAATTTCGCTCATCTTGTG
ATTGTCTGCTTCTTCATTTGGAAAGAGACTCGTGCGGATGGGAGGAAAAA
TCTCCTCTTTTTCTTCTCCAGaaagctttttgaaattttgctcttGCATA
CATTCagaatttgattgaaaatagtTGTTTGGAATTCCTTGCTGGGGCTG
ATACGTTGTTTTTGGCAAATGCAAAAATCTTTGAGGTTGTACGATTTCAC
TATTGACAGTGCTTGATGCATAGCCGGAAGATCCTGATAGGGAATCAAAC
GAAATCACTGAAGGAGAGGTCATTATGCTGGTTGGACTATTTATGGAGCG
ATTGATAGCCAGAGGTGTATCGATTCCTGAAAATCTTTGTGAATTTCCCC
ATTTATGATTTAAATGGTCATTTTGACGATTGTTTTCATCAAGTTTGCTC
AAAGCTTTAGCTGAGAGTTTTGGTTTGACTGATGGTTCTAATTGATTGGG
TAACGATTGAATTG
Run BLAST on NCBI

transcript from alignment at sc0000053:163630..167596-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005472 ID=TCONS_00005472|Name=TCONS_00005472|organism=Clytia hemisphaerica|type=transcript|length=3967bp|location=Sequence derived from alignment at sc0000053:163630..167596- (Clytia hemisphaerica)
CATTCTCACTAAAAGTGTTCGTTTTGATATTCTTCAAGAAAGATGAAACT
AATTGACAAATTTTCTGGAACATTTCATCCTCGTTTTCTGACTTGCAAGT
CAAATCGAGAAGAAGCTCAATACTTCGATTCATTTTAATCTCCAACGATT
GGGAATGCTGCTTAGCTGAAGTGATTTCATTTTCAAGTTCCTTGATTCGC
TTCCACATATCTTTCTTGCTTGAGCGATATGTGTGGACAGGATTCTGTTG
TGATGTTCTTCTTGAGGTGCTCGGTTGCTCAGTATCGGTATTTGATGTCA
CTGTATTTGGAATATGGTTGAGTTGGTTAAACTGAACGATGTGAGGCTCG
TGGCGACGATCCATCGATGATAGTTGAGCAGATTGTTCTCCCTGATTGCT
CGTATGTGTCTGTTGAATCTCAAAGTCTGTATCTTGGTTCATCGAGACTG
ATGATGTTATCTCATCTCCACCTGCTGTATTGACCATGAGTTGGTTGGTT
ATTTCATCATCATTACCAGAGGAATGCTCAGTAACTGCAGCAGTAGATCT
TTTAAGATCTTCAGCTAATCTCCTTACAGCAGACTGATAAACACCATTAT
CACCAACGTTGGAATTCCAATTTACTTCTTGTGGTAAATTAGTTGAAACA
TCTGGTAAATTACTGTTGAAATGAACATTAAACAGATTCTGTAAGAGGGT
ACAATATTCATCATCAATGTTCGTGGGTGGTATGACAGTCCACCCCTCTT
CCTCTTCGTTGCCATCGCAATCATCACCGTCTTGTCGAGCAGACCTTTTG
GGAAATACTGTAATCCAAAATCTCTGAATCCTCCGACCAAAGGTTATAAC
TTCTTTTTGTAATCTCGAAAAACAGCCCATTTTTAAAATTTGTTCAAGTT
TCTGTTCTGGTCTTTGTTCAGTAGCACTGTCCTTTTTATAATCTCTGTCT
CTTTCTCTCCTTCTCTCTTCTATGAATTCAATTTTTTCAATACTGATACA
CGCTCTTTACACGTCGCTCTTTATATAGGCAACACATAACGTCATCATCC
GGGTATTCCCCAAAGTTGTTTTTATGACAAAAAGGGAAATTTTCATATTA
CTTTTATTCTATTGTCCCTTTTTCTTGTTAGTAAACGTGTTAGTAAAAAT
GGCAACAAAAAATTTAGTCGTAAATAAACAATATATCCCTTAGCTTATTC
CTTATTCTTTTCTGAGAAAAGAACAATTAAAGATGTTAGATCTTGTTTCT
GCTTGCCAATGACCGTCATCAACCCGTTTATCTATTTAAAATTATTGTGT
AGGCCTACGTACGTGTCGGTTTTTGAAGCTGAAAGCAATTGTTTGAAGTA
CAAATATATTGATTGAATCGTCCATTTTTTTAATCAAACTATCAAGGGTT
CTAAGATTCTATGACATTTTCTCTTTTGTTACCATGACAACAACAACAAC
AACAATGATTTCCCTCTCAATCATGGATATGAAAAAATGGGAAATTTGAA
ATGGACTTTTGTTTGTACTGTAGTGTATTTTTATGTCGTATAAACTGAAC
GATTTGGTTTTACATGAGCTTAGTCTAGTAACAAGCTAGACGACTAACTC
AGACATAGTAGAAATAAAGCAAAAAATAATGGAGGGAACAATTTTATTCA
AACTAAATCCCGTGACAATAATCGTATTATCATGTAACGCCTATACTACT
TTATTACACGCATTATAAACGACTCCAGTCTAACATGAGCTGAATGTATT
TGCTTACTCGTCAATTTTGAAATCACCTAATGGCAATCGACTCAGTTGTT
GAGCAAAAGCGCATTGTTGTGATATGAAATATGTGTCTAATATAAAAAGG
GGAAACATAAAAAGATTGTTGAATTGTTCGTACATTTTTGTAATGCATGG
TTTCTTAAGAAGCGGCAAAGGAATGGGCCCTTTACCGAGTCACCTGCTAC
AGTAGGTTTTCCAAATCTAAACCTAAATTTAAGTCCTTAAAGTCATAGTC
AAATTGAAGGCATAAAACTTATGCTTAACAACATCCCATATTAGGGCAGG
AATTAAAGTAATCTAACGGATCAAGTTGTGTACTTAACACTGGCTACACA
TAATACAATTTTCAATACTGTACACAGAAAATCTTAGTATTAGTTACCAG
CCTTATTATTGTTGTCAATTAATTTTCAAGGTGCTCCAAAAGTGCGATGT
AAAAAATTATGTACACTGTTTTGCTCAGAATTTATTAAATTCATCTTTAC
AAAATCGTAATTAGTACTAGTAATCGTATGGCTTGGAGTGCAATTAACGA
TTAATCACGAGTAACAAAGGAGAAAATAGTAATTTGCACGAGTCCGAAGG
ACGAGTGCAAATTACGGTATTTTCTCCTTTGTTACGAGTGATTAATCGTT
AATTGCACGACAAAACATACGATTCCGAGGTAATCGTCAGTAAATAATCA
TTAGTAAATCATAGTTTTGAAAAAGAATCTTTTTCTAACTTTAATGTTTT
TGTAAACATTCGAAAACCTCCGTTTTTTCTTTTGTTTAAAAAGAAAACAT
TACAGTGTAATTTTTCTTTGTTTTCAATTAAAAGAAGCTATTGTAACGTA
AAATTTCTTTGTTCTTTTTTATATTGAAGAAAAAAAATGTGTTTGTTTTT
TATTAAAAAAAGAGAAAAGAATAAGGGGACAAAAGTGTCCCCCCGCCGAA
GAGTGCAAAAAGTGGTAATAGTGCAATTAACGATTAATTGCACTCCTCTA
AACCAATCAGATTCGAGTAATTTTGCACGGCTGACGATTAGATAGATAAT
CGTCAGTACTAATACTAGTACTAATTTTCCAGTTAGGAGTTGTGCCTATA
ACGTCAATCTTTTGGCCATAAAAACTTTTGACATGTCCAATTTGGCCACC
TCTCCTATAAAAATGATTAATAATTTTTTAGATAGATCCTAATTACACTG
TAGTGCGTATCATATTATCAATCATATTGATTTAATTGGTATTGTTCACT
ATATGGTCTATCATAAAGAAAGTAGCCACTCGTCCAGCCAAATTCGAATA
TCGTTTTCTTATAATGGGCATGATTCGTTCTTGAAACAAAATGCTTTCCA
TCCCATTCTCGCTGAAAGTGTTCGTTTTGACATTCTTCAAGAAAGATGAA
ACTAATTGACAAATTTTCTGGAACATTTCGTCCTCGTTTTCTGACTTGCA
CGTCAAATCGAGAAGGATTTCAATACTTTGTGTTGCTAGAGTTGCTTCTG
TCTCTAGCTCTTTGATTTGTTTATTATTTTTCTGGCTTTCTCGAGTCTTC
TCTCGTTCTAACGATTTCGAATGTTCTTTAGCTAACAAAACTTCTTTTTC
AAGTTCTTTGATTTTTTCAGCCATTTGTTTTTTACTCTCTCGATATCTTT
TCACAGCTTTGTTATTGCGATTTTTTAAAGCCAATTTCTGCCAAATACTT
TGATGTTTCTTTTCATCTGGGCTTAAATTATCAGCAATTTCGCTCATCTT
GTGATTGTCTGCTTCTTCATTTGGAAAGAGACTCGTGCGGATGGGAGGAA
AAATCTCCTCTTTTTCTTCTCCAGAAAGCTTTTTGAAATTTTGCTCTTGC
ATACATTCAGAATTTGATTGAAAATAGTTGTTTGGAATTCCTTGCTGGGG
CTGATACGTTGTTTTTGGCAAATGCAAAAATCTTTGAGGTTGTACGATTT
CACTATTGACAGTGCTTGATGCATAGCCGGAAGATCCTGATAGGGAATCA
AACGAAATCACTGAAGGAGAGGTCATTATGCTGGTTGGACTATTTATGGA
GCGATTGATAGCCAGAGGTGTATCGATTCCTGAAAATCTTTGTGAATTTC
CCCATTTATGATTTAAATGGTCATTTTGACGATTGTTTTCATCAAGTTTG
CTCAAAGCTTTAGCTGAGAGTTTTGGTTTGACTGATGGTTCTAATTGATT
GGGTAACGATTGAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003107XLOC_003107Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005472-exon-sc0000053-1575043694:167526..167596TCONS_00005472-exon-sc0000053-1575043694:167526..167596Clytia hemisphaericaexon
TCONS_00005472-exon-sc0000053-1575043694:163630..164422TCONS_00005472-exon-sc0000053-1575043694:163630..164422Clytia hemisphaericaexon
TCONS_00005472-exon-sc0000053-1510915933:167526..167596TCONS_00005472-exon-sc0000053-1510915933:167526..167596Clytia hemisphaericaexon
TCONS_00005472-exon-sc0000053-1510915933:163630..164422TCONS_00005472-exon-sc0000053-1510915933:163630..164422Clytia hemisphaericaexon
TCONS_00005472-exon-sc0000053-1491911889:167526..167596TCONS_00005472-exon-sc0000053-1491911889:167526..167596Clytia hemisphaericaexon
TCONS_00005472-exon-sc0000053-1491911889:163630..164422TCONS_00005472-exon-sc0000053-1491911889:163630..164422Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:163630..167596 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.108329	0.0528189	0.0613278	0	0.365219	0.11544	0.69637	0.78232	0.456434	3.61835	0.219504	0.613245	6.95246	3.40434	2.33749	2.70652	0.935205	5.87636	0.863671	5.06111	0	0	0.124208	0.225846	1.22123	1.45323	0.742703	1.03042	0.961894	0.735013
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005472 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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