TCONS_00054895 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00054895
Unique Name	TCONS_00054895
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	745

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_246:95959..99889+

transcript sequence

>TCONS_00054895 ID=TCONS_00054895|Name=TCONS_00054895|organism=Clytia hemisphaerica|type=transcript|length=745bp
TCAAACGACGCCTGGCAATGTGTGCAAGAAAATTGGGGCGAACCAAAGAA
GCAGTCAAATTAATGAAAGAtTTGCTGAAAGAGTACCCTTTATTAAGTGT
TCTCAACATCCACGAGAATTTGATCGAAGCACTACTAGAACTACAAGCAT
ATTCTGAAGTGCAGcaagTACTGACGAAATATGATGatATCAGTCTTCCA
AAATCTGCAACAATATGTTACACAGCCGCCCTCTTGAAAGCAAGAAATGT
AGCTGACAAATTTTCACCAGAGCTAGCAGCAAAGAGAGGTTTGAGTCCAG
CAGAGATGAGCGCAGTAGAAGCAATACACAGAGCTGTTGAATTCAACCCA
CACGTACCTAAGTATTTATTAGAAGAGAAGAGCGTCATTCTTCCAGCAGA
ACACATCCTGAAACGTGGCGATAGTGAAGCCATTGCATATTCTTTCTTTC
ACCTTCAACACTGGAAACGTCTAGATGGTGCTCTCAATCTACTCAATTGT
ACTTGGGAAGGAACGTTCCGTTTGTTACCTTATCCATTGGAGAAAGGTCA
TTTATTTCATCCTTATCCTACTTGCACCGAAGCAGCCGACAAAGAACTCC
TTCCTGaattccACAGAGTATCGGTGTATCCACAGAAAGAGATTCCCTTT
TTCATTCTCTTCACTGCAGCACTTTGCTCTTCATCCGCTGCTCTCGCCCT
CCTCACCTACAGATTTCCCGAACAAATGGGTTACGCTGCAAATAT

Run BLAST on NCBI

transcript from alignment at scaffold_246:95959..99889+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00054895 ID=TCONS_00054895|Name=TCONS_00054895|organism=Clytia hemisphaerica|type=transcript|length=3931bp|location=Sequence derived from alignment at scaffold_246:95959..99889+ (Clytia hemisphaerica)
TCAAACGACGCCTGGCAATGTGTGCAAGAAAATTGGGGCGAACCAAAGAA
GCAGTCAAATTAATGAAAGAtgtaagaaaacaaaaacacttGTTTTTAAG
AATCCTTAGTTTGTTTTACTTTCTCTTATTTCGATTTTCTATTatgatca
ctttcgtttttcttGTTGAAAATAAAAGGTTTAGTTTTTCTAATCGTTTA
ATCTTTgttaatttcaatatttcagTTGCTGAAAGAGTACCCTTTATTAA
GTGTTCTCAACATCCACGAGAATTTGATCGAAGCACTACTAGAACTACAA
GCATATTCTGAAGTGCAGGTAGATAGAATTTAGAACAATGAGGAAAATTC
ATTATCACAGAGACATTATTGCAACCATTTTTTATGATTATGCCTTGCTg
taaaatataaagttatgCTCCTTCCTCTAAATTTTACGTTCAACTTTCCT
ACTTTACATGGTTGATATGTTTGTAATTTACTTTTTCGGAAGTGACTGGT
TGTTGTTGACCAAGGGTGAccgtaaaatttaattttttgatttttatttt
ttagcaagTACTGACGAAATATGATGGTGAGTCTTggttttttaatttga
attaaaatttaGATTATGAAAAAGAATTCCAGGGGATTATTATTGCAAAG
catttattttttaaccaaaatttatGTATTTTCTTTCTGTATTATGAACA
TTGTGTCAGTTCTTTTGACAGGTTGCATCCTCATAGCAGGATGGGATGCA
GGTTTATTAAAAGTCAACCCGGTTAATTCTTTTCAAATCAGACATTTATC
AATCTGCAACAtactctttttgtttttgtttagatATCAGTCTTCCAAAA
TCTGCAACAATATGTTACACAGCCGCCCTCTTGAAAGCAAGAAATGTAGC
TGACAAGTAAGTCCTTTCTCCTCCTGTCCTACAAACTTGACTCGTCCATC
TTGTAAAGCCAGATCTGTAACAACTCAAATATGACAATATGAGTGATCTT
CACTCAGTCTTGAAACATGTTCTATATAGGAATTGGTAAGTTGCATATTG
ATAATTTCAGATTTTCACCAGAGCTAGCAGCAAAGAGAGGTTTGAGTCCA
GCAGAGATGAGCGCAGTAGAAGCAATACACAGAGCTGTTGAATTCAACCC
ACACGTACCTAAGGTTcgtaaaaaaatctcttttccttgTTAATGACAAA
TATAAAAGTCTATATTATCATATATATGAAAGAAAGTTTTCCTTGAACTA
TCTACACTTTTGCTCTTGTTTTTGTTCCGATTCTTATAAAACCTTTTTTG
TTGATCAGTATTTATTAGAAGAGAAGAGCGTCATTCTTCCAGCAGAACAC
ATCCTGAAACGTGGCGATAGTGAAGCCATTGCATATTCTTTCTTTCACCT
TCAACACTGGAAACGTCTAGATGGTGCTCTCAATCTACTCAATTGTACTT
GGGAAGGAAGTAAGCGCTTTTGCCATCGCCTTTTTGATGTGACCCCGTTC
TTTTACTATCATTTGCGGAAGCGAGCtaagggaccattcaaaaagtacgt
acgctctaAGGAGGGTCCTTCGAAAAGCGTACGAAAGCGTACATGGGGGA
GGGGGTCAATCAAGGAAATGTGCGTACGCTTTGCAAACTCTTTCAAACTG
TTTTTTCCACCTTTTTCTAACTTTCtacatttgaaaaatggaaatattAT
AAATCTTTCAACCCATGTTAATTGTGTTATCCATATGTCAACCTGTTATA
ATCTTTTAGTTTCTTTAACTTTATATCGTTACAATCAAGACCCAGGAAGG
GGGGAGGGGTAATTGGAAAAGCGTACGTACGTACGTGGAAGGGGGTACTA
TCAAAGCGTACGTGAGCGTACAAGGAGGGAAGGGGTAGAATTTTGCTTAC
TtttgagcgtacgtactttttgaattgtCCCTTAATGGAAAATCAAATAT
TGCACACCTTCCCATAATCGGTGATAGCTGCCCACTCCATTATGTGATAA
CATATCCTTACATGAGAGAATAATGATAATATACTTCCTAATGTCTAATC
CTAATGATATAAAATTCGATTTACTTTTAGCGTTCCGTTTGTTACCTTAT
CCATTGGAGAAAGGTCATTTATTTCATCCTTATCCTACTTGCACCGAAGC
AGCCGACAAAGAACTCCTTCCTGGTGAGTGTCATTGACCATTCATTCATT
CGCATTCATTCATTTGTGTGAAATGATTTCTTTGTTGGGGTTACTCAGAA
GCGCAAAATAACAGTGACAAAATGTGGCTCCCTGTTGTTTATACATATTC
AGTTAGACGCTAGCGTGAACCAAACTCAACTTCTAAGGGAAAGATCCGGC
AATTACGGTTTGTAAGGGTTGGCACCATCCAGTATCAGAGACATCTCTTG
TTACCTCTACCCGTAACAGACCGAAACACGGCAAGATNaaaattggaaaa
atcataaaaagttccatacactaaaattttattatgatcttcatcaaaga
taaaaaacaaagtgaatttttgatccaaaaaatactttttggaaaatttg
cttggtaccttaccaaccctgataaatgaaaaatttattcttattttacc
gaccgaccgaccaaccgacccatatttttctaacaatctacccgtagaac
aacaaattaaattggtcttgcattacttttggtttttaatttctctaaac
ttttatgttttcatgcaaggtgtgatctgatccttaaaatgcaaaaatga
agacattctattgcattctctaaaagtgcacacacatgtaaatagagctt
tgtgaatgccataaaatttttcccctatactgggacctaaaattttatca
gactggggggacctaaatttggcggggggacctagaaccccagtcggagc
catgaCGCTTTGCAAACTCTTTCAAACTGTTTTTTCCAGCTTTTTCTAAC
TTTCtacatttgaaaaatggaaatattATAAACCTTTCAACCCATCTTAA
TTGTGTTATCCGTATGTCAACCTATTATAATCTTTTAGTTTCTTTAACTT
TATATCATTACAATCAAGACTCCACTTTTTTTCTACAGGAAGGAGGGGGT
AATCGGAAAAGCGTACGTACGTGGTACTATCAAAGCGTACGTGAGCGTAC
AAGGAGGGAAGGGGTagaatttttcttacttttgagcgtacgtacttttt
gaattgtCCCTTAATGGAAAATCAAATAGTGTACACCTTCCCGTAATGGA
TGATAGCTGCCTACTCCATTATGTGATAACATATCCTTACATGAGAGAAT
AATGATAATATGCTTTCTAATGTCTAATCTTAATGATATAAAATTCGATT
TACTTTTAGCGTTCCGTTTGTTACCTTATCCATTGGAGAAAGGTCATTTA
TTTCATCCTTATCCTACTTGCACCGAAGCAGCCGACAAAGAACTCCTTCC
TGGTGAGTGTCATTGACCATTCATTCATTCGCATTCATTCATTTGTGTGA
AATGATTTCTTTGTTGGGGTTACTCAGAAGCGCAAAATAACAGTGACAAA
ATGTGGCTCCCTGTTGTTTATACATATTCAGTTAGACGCTAGCGTGAACC
AAACTCAACTTCTAAGGGAAAGATCCGGCAATTACGGTTTGTAAGGGTTG
GCACCATCCAGTATCAGAGACATCTCTTGTTACCTCTACCCGTAACAGAC
CGAAACACggcaagattttcaaaaaagcaaaattcGCTTTGGTTACCCCT
GGTTACCCATATGatattttttcattgcattttattttttagaattccAC
AGAGTATCGGTGTATCCACAGAAAGAGATTCCCTTTTTCATTCTCTTCAC
TGCAGCACTTTGCTCTTCATCCGCTGCTCTCGCCCTCCTCACCTACAGAT
TTCCCGAACAAATGGGTTACGCTGCAAATAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_034592	XLOC_034592	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_246	supercontig	scaffold_246:95959..99889 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
56.0902	52.1046	25.1388	20.674	31.2952	24.8597	21.7662	24.2433	22.1035	26.5683	19.8208	20.2	10.6108	10.5338	15.2465	16.7836	16.902	18.9979	6.92049	8.8195	8.73256	10.7563	33.6682	29.7083	12.5611	14.4605	11.9961	9.37346	21.3707	21.6661

Blast

[Close]

BLAST of TCONS_00054895 vs. Swiss-Prot (Human)
Match: ST7 (Suppressor of tumorigenicity 7 protein OS=Homo sapiens GN=ST7 PE=1 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.524e-130
Identity = 199/246 (80.89%), Postives = 227/246 (92.28%), Query Frame = 3

Query:    3 KRRLAMCARKLGRTKEAVKLMKDLLKEYPLLSVLNIHENLIEALLELQAYSEVQQVLTKYDDISLPKSATICYTAALLKARNVADKFSPELAAKRGLSPAEMSAVEAIHRAVEFNPHVPKYLLEEKSVILPAEHILKRGDSEAIAYSFFHLQHWKRLDGALNLLNCTWEGTFRLLPYPLEKGHLFHPYPTCTEAADKELLPEFHRVSVYPQKEIPFFILFTXXXXXXXXXXXXXTYRFPEQMGYAA 740
            KRRLAMCAR+LGRT+EAVK+M+DL+KE+PLLS+ NIHENL+EALLELQAY++VQ VL KYDDISLPKSATICYTAALLKAR V+DKFSPE A++RGLS AEM+AVEAIHRAVEFNPHVPKYLLE KS+ILP EHILKRGDSEAIAY+FFHL HWKR++GALNLL+CTWEGTFR++PYPLEKGHLF+PYP CTE AD+ELLP FH VSVYP+KE+PFFILFTA LCS +A LALLT++FPE MG  A
Sbjct:  299 KRRLAMCARRLGRTREAVKMMRDLMKEFPLLSMFNIHENLLEALLELQAYADVQAVLAKYDDISLPKSATICYTAALLKARAVSDKFSPEAASRRGLSTAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGDSEAIAYAFFHLAHWKRVEGALNLLHCTWEGTFRMIPYPLEKGHLFYPYPICTETADRELLPSFHEVSVYPKKELPFFILFTAGLCSFTAMLALLTHQFPELMGVFA 544

The following BLAST results are available for this feature:

BLAST of TCONS_00054895 vs. Swiss-Prot (Human)

BLAST of TCONS_00054895 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ST7	2.524e-130	80.89	Suppressor of tumorigenicity 7 protein OS=Homo sap...	[more]

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TCONS_00054895 (transcript) - C. hemisphaerica