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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054785 ID=TCONS_00054785|Name=TCONS_00054785|organism=Clytia hemisphaerica|type=transcript|length=1279bp
TTGTCAAAAAAAGTTATGGACTAAATACTAAAAAACTACCTTTTAAAAAA
GTCGAAAAGGGCGATAAATGAGGGTGTCACGCGAAAGGTGCCACGGATCA
TTAAGGATTGCCCCCTTTCTATAAGCAgagaaatcagaaaattttaaagt
tttcgattctttggaaattttttatttataaaaaacagGTACATTTAAAA
AGTGGGCTTCactcttttttgacgtcaaaattatGGAAGAAGtctttgca
atgcaatgttCATATTAGAATTCAAATCCCTTTAATTAAACTGTCATTTC
TCAGCAAAAAGGAAGTAAACAAAAACCGTCATATGTTATATGCAgctcat
ggcgttctaaatctgtGACTCTTAGAGCACATTTTCATTGATGCAGCTCT
ATTACTTTATCGCTCCAGCTGTTTTCTCGATCACTTTCCTCGTCATCTGG
TTCAGGATATACGCTAAACAACAAGCAAATCGCAATCGAATTTCGAACAT
GGATAGAACAACAGAAGACATTGCTATCGGCGGATATCCTCAACAGCCGA
CGACGCAACAGGGAAACGGCGGATATCCTCAACAACAAATAGCACAGCCG
GGCGGTGGTGGTTTTGGTTTCGGACATCCACCACCACAACCAAATGGAAC
AAATACAAACCCCATGTTTCCAAACAATAACCATTTTCATCAACCAGGAG
GTTTTCAGCAACAACCATCGAACAATAATCCTATGTTTGCACCACCGCCA
CCACCACCCCCTTACAACCAAGCAAGATCCATGTTCTGAAGACTCTAAAT
TTCTATATAATGGTGCATaattcacctttcaaagccacATTCAAACCTTC
GATGGATCGACTTGACTTATTTTGGAGATGTGTTGGATTTTTACTGCCAA
GAAAAAATACTTGGACGTTATAGATGTAAATACAGTAATAATCAGATACt
gtttttgatttcattatAGCGAATGACCTAGCGATTATGTTTACTccaag
ttcttttttttttccacCGATGTCTTTGATTGAGACAGAATTTTTCTGCA
GTAAATAAAGATAGGTGACTGTAGAAAACTTCGATCAACACGGTAATTGC
AATTCACTAAGTTCCATGAAATTGTTCGCCTTTTTTGTTGTCTATAATCA
GCAAAGAAAGGAACTTACTTGAATTGACGTCAGAATGGACGAGACGTCAT
ATGTTGGACTCCATCTGTTCTGTAAAATATCCAGGCAAATTCCACCGTCA
GCATAAACTGGAAATAAGAGAGAAAAGAG Run BLAST on NCBI protein sequence of TCONS_00054785-protein >TCONS_00054785-protein ID=TCONS_00054785-protein|Name=TCONS_00054785-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
MQLYYFIAPAVFSITFLVIWFRIYAKQQANRNRISNMDRTTEDIAIGGYP
QQPTTQQGNGGYPQQQIAQPGGGGFGFGHPPPQPNGTNTNPMFPNNNHFH
QPGGFQQQPSNNNPMFAPPPPPPPYNQARSMF Run BLAST on NCBI transcript from alignment at scaffold_245:688266..689695+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054785 ID=TCONS_00054785|Name=TCONS_00054785|organism=Clytia hemisphaerica|type=transcript|length=1430bp|location=Sequence derived from alignment at scaffold_245:688266..689695+ (Clytia hemisphaerica)
TTGTCAAAAAAAGTTATGGACTAAATACTAAAAAACTACCTTTTAAAAAA
GTCGAAAAGGGCGATAAATGAGGGTGTCACGCGAAAGGTGCCACGGATCA
TTAAGGATTGCCCCCTTTCTATAAGCAgagaaatcagaaaattttaaagt
tttcgattctttggaaattttttatttataaaaaacagGTACATTTAAAA
AGTGGGCTTCactcttttttgacgtcaaaattatGGAAGAAGtctttgca
atgcaatgttCATATTAGAATTCAAATCCCTTTAATTAAACTGTCATTTC
TCAGCAAAAAGGAAGTAAACAAAAACCGTCATATGTTATATGCAgctcat
ggcgttctaaatctgtGACTCTTAGAGCACATTTTCATTGATGCAGCTCT
ATTACTTTATCGCTCCAGCTGTTTTCTCGATCACTTTCCTCGTCATCTGG
TTCAGGATATACGCTAAACAACAAGCAAATCGCAATCGAATTTCGAACAT
GGATAGAACAACAGAAGACATTGCTATCGGCGGATATCCTCAACAGCCGA
CGACGCAACAGGGAAACGGCGGATATCCTCAACAACAAATAGCACAGCCG
GGCGGTGGTGGTTTTGGTTTCGGACATCCACCACCACAACCAAATGGAAC
AAATACAAACCCCATGTTTCCAAACAATAACCATTGTAGGTATATAGATG
CTCAACACAAGTTTCGAATACTTCAAACGAAGGTCCATTTCTATAATGAT
GAAACTCAAAACTCAATTTACTCTCATTCGAGCTGAATTGATGACACCTT
CACACAAAGCACAAaactttttcttcttccttttagTTCATCAACCAGGA
GGTTTTCAGCAACAACCATCGAACAATAATCCTATGTTTGCACCACCGCC
ACCACCACCCCCTTACAACCAAGCAAGATCCATGTTCTGAAGACTCTAAA
TTTCTATATAATGGTGCATaattcacctttcaaagccacATTCAAACCTT
CGATGGATCGACTTGACTTATTTTGGAGATGTGTTGGATTTTTACTGCCA
AGAAAAAATACTTGGACGTTATAGATGTAAATACAGTAATAATCAGATAC
tgtttttgatttcattatAGCGAATGACCTAGCGATTATGTTTACTccaa
gttcttttttttttccacCGATGTCTTTGATTGAGACAGAATTTTTCTGC
AGTAAATAAAGATAGGTGACTGTAGAAAACTTCGATCAACACGGTAATTG
CAATTCACTAAGTTCCATGAAATTGTTCGCCTTTTTTGTTGTCTATAATC
AGCAAAGAAAGGAACTTACTTGAATTGACGTCAGAATGGACGAGACGTCA
TATGTTGGACTCCATCTGTTCTGTAAAATATCCAGGCAAATTCCACCGTC
AGCATAAACTGGAAATAAGAGAGAAAAGAG Coding sequence (CDS) from alignment at scaffold_245:688266..689695+ >TCONS_00054785 ID=TCONS_00054785|Name=TCONS_00054785|organism=Clytia hemisphaerica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_245:688266..689695+ (Clytia hemisphaerica)
ATGCAGCTCTATTACTTTATCGCTCCAGCTGTTTTCTCGATCACTTTCCT
CGTCATCTGGTTCAGGATATACGCTAAACAACAAGCAAATCGCAATCGAA
TTTCGAACATGGATAGAACAACAGAAGACATTGCTATCGGCGGATATCCT
CAACAGCCGACGACGCAACAGGGAAACGGCGGATATCCTCAACAACAAAT
AGCACAGCCGGGCGGTGGTGGTTTTGGTTTCGGACATCCACCACCACAAC
CAAATGGAACAAATACAAACCCCATGTTTCCAAACAATAACCATTTTCAT
CAACCAGGAGGTTTTCAGCAACAACCATCGAACAATAATCCTATGTTTGC
ACCACCGCCACCACCACCCCCTTACAACCAAGCAAGATCCATGTTCTGAA
TGCAGCTCTATTACTTTATCGCTCCAGCTGTTTTCTCGATCACTTTCCTC
GTCATCTGGTTCAGGATATACGCTAAACAACAAGCAAATCGCAATCGAAT
TTCGAACATGGATAGAACAACAGAAGACATTGCTATCGGCGGATATCCTC
AACAGCCGACGACGCAACAGGGAAACGGCGGATATCCTCAACAACAAATA
GCACAGCCGGGCGGTGGTGGTTTTGGTTTCGGACATCCACCACCACAACC
AAATGGAACAAATACAAACCCCATGTTTCCAAACAATAACCATTTTCATC
AACCAGGAGGTTTTCAGCAACAACCATCGAACAATAATCCTATGTTTGCA
CCACCGCCACCACCACCCCCTTACAACCAAGCAAGATCCATGTTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054785-exon-scaffold_245-1491911889:688266..688950 | TCONS_00054785-exon-scaffold_245-1491911889:688266..688950 | Clytia hemisphaerica | exon |
| TCONS_00054785-exon-scaffold_245-1510915933:688266..688950 | TCONS_00054785-exon-scaffold_245-1510915933:688266..688950 | Clytia hemisphaerica | exon |
| TCONS_00054785-exon-scaffold_245-1575043694:688266..688950 | TCONS_00054785-exon-scaffold_245-1575043694:688266..688950 | Clytia hemisphaerica | exon |
| TCONS_00054785-exon-scaffold_245-1491911889:689102..689695 | TCONS_00054785-exon-scaffold_245-1491911889:689102..689695 | Clytia hemisphaerica | exon |
| TCONS_00054785-exon-scaffold_245-1510915933:689102..689695 | TCONS_00054785-exon-scaffold_245-1510915933:689102..689695 | Clytia hemisphaerica | exon |
| TCONS_00054785-exon-scaffold_245-1575043694:689102..689695 | TCONS_00054785-exon-scaffold_245-1575043694:689102..689695 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_245 | supercontig | scaffold_245:688266..689695 + |
Blast
The following BLAST results are available for this feature:
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