TCONS_00054865 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054865
Unique NameTCONS_00054865
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length319

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054865 ID=TCONS_00054865|Name=TCONS_00054865|organism=Clytia hemisphaerica|type=transcript|length=319bp
NNCGTCGAAGACTAGACCTCGGTATCCGTCGACAAGTTTCAGTATCTTTT
CGATCTCTGTTGGGTCTGCTTCGTTGCTGTCAGGACGTGTTTCGACTTGT
ATTCCAAGGTTGTCTCTGATGAGTTGGGGAATCCTCTTAATTGCACTTGT
GTCTTGTGTTCGGGGGCTCTTTCCTTCCTTGTTGAAGGTGATGAATCCTA
GGTGTTCTGCGTCGTTGTCTTCGAGTAGCGGTTCTGGTTGAAAACCGTCC
ACAACATATACTTTGCTATTGATCTTGCTTTCTTTGGCGTTCTCGATCAC
AGTGTGAACCATTCCGGNN
Run BLAST on NCBI

protein sequence of TCONS_00054865-protein

>TCONS_00054865-protein ID=TCONS_00054865-protein|Name=TCONS_00054865-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
XGMVHTVIENAKESKINSKVYVVDGFQPEPLLEDNDAEHLGFITFNKEGK
SPRTQDTSAIKRIPQLIRDNLGIQVETRPDSNEADPTEIEKILKLVDGYR
GLVFDX
Run BLAST on NCBI

transcript from alignment at scaffold_245:416897..417215

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054865 ID=TCONS_00054865|Name=TCONS_00054865|organism=Clytia hemisphaerica|type=transcript|length=319bp|location=Sequence derived from alignment at scaffold_245:416897..417215 (Clytia hemisphaerica)
NNCCGGAATGGTTCACACTGTGATCGAGAACGCCAAAGAAAGCAAGATCA
ATAGCAAAGTATATGTTGTGGACGGTTTTCAACCAGAACCGCTACTCGAA
GACAACGACGCAGAACACCTAGGATTCATCACCTTCAACAAGGAAGGAAA
GAGCCCCCGAACACAAGACACAAGTGCAATTAAGAGGATTCCCCAACTCA
TCAGAGACAACCTTGGAATACAAGTCGAAACACGTCCTGACAGCAACGAA
GCAGACCCAACAGAGATCGAAAAGATACTGAAACTTGTCGACGGATACCG
AGGTCTAGTCTTCGACGNN

Coding sequence (CDS) from alignment at scaffold_245:416897..417215

>TCONS_00054865 ID=TCONS_00054865|Name=TCONS_00054865|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at scaffold_245:416897..417215 (Clytia hemisphaerica)
NCCGGAATGGTTCACACTGTGATCGAGAACGCCAAAGAAAGCAAGATCAA
TAGCAAAGTATATGTTGTGGACGGTTTTCAACCAGAACCGCTACTCGAAG
ACAACGACGCAGAACACCTAGGATTCATCACCTTCAACAAGGAAGGAAAG
AGCCCCCGAACACAAGACACAAGTGCAATTAAGAGGATTCCCCAACTCAT
CAGAGACAACCTTGGAATACAAGTCGAAACACGTCCTGACAGCAACGAAG
CAGACCCAACAGAGATCGAAAAGATACTGAAACTTGTCGACGGATACCGA
GGTCTAGTCTTCGACGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034564XLOC_034564Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054865-exon-scaffold_245-1491911889:416897..417215TCONS_00054865-exon-scaffold_245-1491911889:416897..417215Clytia hemisphaericaexon
TCONS_00054865-exon-scaffold_245-1510915933:416897..417215TCONS_00054865-exon-scaffold_245-1510915933:416897..417215Clytia hemisphaericaexon
TCONS_00054865-exon-scaffold_245-1575043694:416897..417215TCONS_00054865-exon-scaffold_245-1575043694:416897..417215Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054865-proteinTCONS_00054865-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:416897..417215 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.19812	0.828672	1.59506	0.714442	1.07295	0.6873	1.25328	1.55257	2.93754	2.01259	1.50611	2.32117	1.2873	3.07928	0.919811	0.828621	1.04069	0.664157	1.21764	2.61495	3.71285	2.62764	2.15922	1.00847	5.75164	3.84161	2.63136	0	1.24984	0.575332
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054865 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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