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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054861 ID=TCONS_00054861|Name=TCONS_00054861|organism=Clytia hemisphaerica|type=transcript|length=2531bp
ATACTAAATTTTACTCCCCCAAGTTTAATATAAGTTTGGATACTCTGAAC
CTTGTCcttgaactttttaaatttctgcCTTCTTTTTACCAGACAAACTG
AAACAAGATGATTGAGCTGGTGAAAAAGTAACAAAGGAAACTAAGGGGAG
CCGTTTAAACTCAGACTCACCACACGAAAAACGACCATAGGACGTTTTTT
ATACCTTTCTATTATCCTCTCATTCAAAAAGCttttcatagtgtcctccc
cctggattcagggggggaatgggttttgaggtcaaaaggacgtatagggg
gaaagaattttcattctaggcatgggggggggggagaagagaccctgaag
gacactatgcCTTTATTACTTGTTGTCAGTTCAAAATAAATCTACAAAAA
GAGTGTAACCATTCATGTTGTTTTAGTTTTGTTATATTGTCTCTTTCTAG
CAATACTAGAATTTAAATAGAAATGATGAAAAGAAAGCATGACGATGATG
AACACTCTACTGAAATGCATGGGGATATCAATAAGTTGCTAGGAGAGCTT
CAACCAGCCAAAAAGTTGCTcaagaatctgttaaagaaaggAAGACAATC
AAAGGAAGATCTTCATGGGAGTGTCACAAAAGAGAGTGAAGACGAAGTAG
AAACTGAAGGAGAAGAAGGGAGCGAGGAAGATTTTGGGAcagcttctgaa
aatgaaagtgatctTGAAATTGAAGAAGAGGTTGTTGATTCTACTGATCC
ATTTAGTGTTCATTTTGAACAAACTCTGGAAGAAAACATTGTAGATGCTT
TCAAATCAAATGTCAAAATGCAAAAagtcaaaactttcaaaaaagctggC
ATGACTGTTGATGAattcagttttgaaaatatgaaagatatttcagaGCA
TATTGTAGAGTTTAACTCCCCTCTTCTCAATTTTGGAATGGTTTCTGTAA
AGGAGAAGTTGTCACAAAATTGGAGTGTTGTCAACAAGGCTAAAAAGTCT
AAAGAAAACCTTACTGGGCTTCAAAGGGAACTTTTGAAACCTATATTTTC
TTACCAAGATTTATGCTACACTGGTCGTAATTTTCATAATGGAGAGGAAA
TTAGAAAGCTGTATTCGCTTCATGCTGTAAATCATGTTTTGAAAACACGT
ACAAAATTTCTCAAACATAATGCTAAATTACAAAGTGCTGCTGAAGCTGG
TATTGGAATAGAGGAGGAGCTCCGTGACCAAGGAATCACCCGTCCAAAAG
TGTTGATTGTTGTACCTTTCAAAGATTCTTGCTTaaagattgtgaatgtt
ttgaaGAAGTTGTTGTTCGGGAATGAAAAGAAAGTGCAGATAATGAACAA
GAAGAGGTTtcagaaagaattttcttcagATGAGGCAAGCCATCAAGGAT
ACCGCCCTGAAGATTTTAAGCTGATGTTTGAGGGTAACATAGATGATGGC
TTTCGTATTGGTATTTCCCTTTCCAAAAACACTATGAAACTTTACACTCA
TTTTTATTCATCTGATATTATTATTGCATCACCTCTTGGTTTGCGCACAT
TGATTGGAGGGAAAGGAGAAAAGcaagattttgattttctttcatcAATC
GAGTTGCTAATTATAGATCAAGCTGAAGTCTTCTTAATGCAAAATTGGGA
TCATCTTATCACTGTATTAGATCACATTAACAGAAGACCCAAGAGTACTC
ACGATACAGATATCTCCCGTGTCCGAATGTGGTCAATCAATGAATGGTCC
AGATATTATCGACAAAACCTCATCTTCTCATCCTTCCCCACACCAGAAAT
CAACAGTATCTTCAatagatattttcaaaattttgctggGAAAACAAAAT
GGGTCGTTACAGACAGTCCAGGAACTGTGCAGCATGTTGTTTCAGAGATC
CCACAAGTATTCCGTCGTATCAATGTTGATGATTATGCTTCTCTTCCTGA
TAAGAGATTCGAGTTCTTTGTGGATCAAATGCTTCCTGAtttagtaaaaa
atcaaaaatccatCGCCATCTACATCCCatcttattttgattttgttcgc
GTTCGAAATTACATGAAGAAAGAAGAGATAGGCTTTGTTCAAATATCTGA
GTATACAAAGAAAAGCTACTCCTCGCACGCAAGGACCTTGTTTAGAGAGG
GTCGAAAGCAATTTCTCATCTTCACTGGTcggtttttcttttattatcgT
TACCGTATCACTGGTATCAGGAATCTTGTGTTTTATGATATCCCTCTATA
TCCCCAGTTTTATCCTGAAGTTGTGAACTTTATCAAAACAGATGATAAGG
AGGGTTCACCATCTTGCACTGCCTTATTCAGTAGGTATGATGCTCTGAAA
TTACAAGGTGTCGTTGGCACTGAGCGTATGAAGAAAATGATGTCTGGAAA
AGCTGTTCATATGATTGTAACAggcaaataattttttataacaCGGTCAT
TTTACTACACTTTTTGTAtccataatttttgattttataaaaatcatgat
AATGGTTTGTTCATCTATGAGTCATTTTTAC Run BLAST on NCBI protein sequence of TCONS_00054861-protein >TCONS_00054861-protein ID=TCONS_00054861-protein|Name=TCONS_00054861-protein|organism=Clytia hemisphaerica|type=polypeptide|length=652bp
MMKRKHDDDEHSTEMHGDINKLLGELQPAKKLLKNLLKKGRQSKEDLHGS
VTKESEDEVETEGEEGSEEDFGTASENESDLEIEEEVVDSTDPFSVHFEQ
TLEENIVDAFKSNVKMQKVKTFKKAGMTVDEFSFENMKDISEHIVEFNSP
LLNFGMVSVKEKLSQNWSVVNKAKKSKENLTGLQRELLKPIFSYQDLCYT
GRNFHNGEEIRKLYSLHAVNHVLKTRTKFLKHNAKLQSAAEAGIGIEEEL
RDQGITRPKVLIVVPFKDSCLKIVNVLKKLLFGNEKKVQIMNKKRFQKEF
SSDEASHQGYRPEDFKLMFEGNIDDGFRIGISLSKNTMKLYTHFYSSDII
IASPLGLRTLIGGKGEKQDFDFLSSIELLIIDQAEVFLMQNWDHLITVLD
HINRRPKSTHDTDISRVRMWSINEWSRYYRQNLIFSSFPTPEINSIFNRY
FQNFAGKTKWVVTDSPGTVQHVVSEIPQVFRRINVDDYASLPDKRFEFFV
DQMLPDLVKNQKSIAIYIPSYFDFVRVRNYMKKEEIGFVQISEYTKKSYS
SHARTLFREGRKQFLIFTGRFFFYYRYRITGIRNLVFYDIPLYPQFYPEV
VNFIKTDDKEGSPSCTALFSRYDALKLQGVVGTERMKKMMSGKAVHMIVT
GK Run BLAST on NCBI transcript from alignment at scaffold_245:250401..252931 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054861 ID=TCONS_00054861|Name=TCONS_00054861|organism=Clytia hemisphaerica|type=transcript|length=2531bp|location=Sequence derived from alignment at scaffold_245:250401..252931 (Clytia hemisphaerica)
GTAAAAATGACTCATAGATGAACAAACCATTatcatgatttttataaaat
caaaaattatggaTACAAAAAGTGTAGTAAAATGACCGtgttataaaaaa
ttatttgccTGTTACAATCATATGAACAGCTTTTCCAGACATCATTTTCT
TCATACGCTCAGTGCCAACGACACCTTGTAATTTCAGAGCATCATACCTA
CTGAATAAGGCAGTGCAAGATGGTGAACCCTCCTTATCATCTGTTTTGAT
AAAGTTCACAACTTCAGGATAAAACTGGGGATATAGAGGGATATCATAAA
ACACAAGATTCCTGATACCAGTGATACGGTAAcgataataaaagaaaaac
cgACCAGTGAAGATGAGAAATTGCTTTCGACCCTCTCTAAACAAGGTCCT
TGCGTGCGAGGAGTAGCTTTTCTTTGTATACTCAGATATTTGAACAAAGC
CTATCTCTTCTTTCTTCATGTAATTTCGAACgcgaacaaaatcaaaataa
gatGGGATGTAGATGGCGatggatttttgattttttactaaaTCAGGAAG
CATTTGATCCACAAAGAACTCGAATCTCTTATCAGGAAGAGAAGCATAAT
CATCAACATTGATACGACGGAATACTTGTGGGATCTCTGAAACAACATGC
TGCACAGTTCCTGGACTGTCTGTAACGACCCATTTTGTTTTCccagcaaa
attttgaaaatatctatTGAAGATACTGTTGATTTCTGGTGTGGGGAAGG
ATGAGAAGATGAGGTTTTGTCGATAATATCTGGACCATTCATTGATTGAC
CACATTCGGACACGGGAGATATCTGTATCGTGAGTACTCTTGGGTCTTCT
GTTAATGTGATCTAATACAGTGATAAGATGATCCCAATTTTGCATTAAGA
AGACTTCAGCTTGATCTATAATTAGCAACTCGATTgatgaaagaaaatca
aaatcttgCTTTTCTCCTTTCCCTCCAATCAATGTGCGCAAACCAAGAGG
TGATGCAATAATAATATCAGATGAATAAAAATGAGTGTAAAGTTTCATAG
TGTTTTTGGAAAGGGAAATACCAATACGAAAGCCATCATCTATGTTACCC
TCAAACATCAGCTTAAAATCTTCAGGGCGGTATCCTTGATGGCTTGCCTC
ATctgaagaaaattctttctgaAACCTCTTCTTGTTCATTATCTGCACTT
TCTTTTCATTCCCGAACAACAACTTCttcaaaacattcacaatctttAAG
CAAGAATCTTTGAAAGGTACAACAATCAACACTTTTGGACGGGTGATTCC
TTGGTCACGGAGCTCCTCCTCTATTCCAATACCAGCTTCAGCAGCACTTT
GTAATTTAGCATTATGTTTGAGAAATTTTGTACGTGTTTTCAAAACATGA
TTTACAGCATGAAGCGAATACAGCTTTCTAATTTCCTCTCCATTATGAAA
ATTACGACCAGTGTAGCATAAATCTTGGTAAGAAAATATAGGTTTCAAAA
GTTCCCTTTGAAGCCCAGTAAGGTTTTCTTTAGACTTTTTAGCCTTGTTG
ACAACACTCCAATTTTGTGACAACTTCTCCTTTACAGAAACCATTCCAAA
ATTGAGAAGAGGGGAGTTAAACTCTACAATATGCtctgaaatatctttca
tattttcaaaactgaatTCATCAACAGTCATGccagcttttttgaaagtt
ttgactTTTTGCATTTTGACATTTGATTTGAAAGCATCTACAATGTTTTC
TTCCAGAGTTTGTTCAAAATGAACACTAAATGGATCAGTAGAATCAACAA
CCTCTTCTTCAATTTCAagatcactttcattttcagaagctgTCCCAAAA
TCTTCCTCGCTCCCTTCTTCTCCTTCAGTTTCTACTTCGTCTTCACTCTC
TTTTGTGACACTCCCATGAAGATCTTCCTTTGATTGTCTTcctttcttta
acagattcttgAGCAACTTTTTGGCTGGTTGAAGCTCTCCTAGCAACTTA
TTGATATCCCCATGCATTTCAGTAGAGTGTTCATCATCGTCATGCTTTCT
TTTCATCATTTCTATTTAAATTCTAGTATTGCTAGAAAGAGACAATATAA
CAAAACTAAAACAACATGAATGGTTACACTCTTTTTGTAGATTTATTTTG
AACTGACAACAAGTAATAAAGgcatagtgtccttcagggtctcttctccc
ccccccccatgcctagaatgaaaattctttccccctatacgtccttttga
cctcaaaacccattccccccctgaatccagggggaggacactatgaaaaG
CTTTTTGAATGAGAGGATAATAGAAAGGTATAAAAAACGTCCTATGGTCG
TTTTTCGTGTGGTGAGTCTGAGTTTAAACGGCTCCCCTTAGTTTCCTTTG
TTACTTTTTCACCAGCTCAATCATCTTGTTTCAGTTTGTCTGGTAAAAAG
AAGgcagaaatttaaaaagttcaagGACAAGGTTCAGAGTATCCAAACTT
ATATTAAACTTGGGGGAGTAAAATTTAGTAT Coding sequence (CDS) from alignment at scaffold_245:250401..252931 >TCONS_00054861 ID=TCONS_00054861|Name=TCONS_00054861|organism=Clytia hemisphaerica|type=CDS|length=1959bp|location=Sequence derived from alignment at scaffold_245:250401..252931 (Clytia hemisphaerica)
ttatttgccTGTTACAATCATATGAACAGCTTTTCCAGACATCATTTTCT
TCATACGCTCAGTGCCAACGACACCTTGTAATTTCAGAGCATCATACCTA
CTGAATAAGGCAGTGCAAGATGGTGAACCCTCCTTATCATCTGTTTTGAT
AAAGTTCACAACTTCAGGATAAAACTGGGGATATAGAGGGATATCATAAA
ACACAAGATTCCTGATACCAGTGATACGGTAAcgataataaaagaaaaac
cgACCAGTGAAGATGAGAAATTGCTTTCGACCCTCTCTAAACAAGGTCCT
TGCGTGCGAGGAGTAGCTTTTCTTTGTATACTCAGATATTTGAACAAAGC
CTATCTCTTCTTTCTTCATGTAATTTCGAACgcgaacaaaatcaaaataa
gatGGGATGTAGATGGCGatggatttttgattttttactaaaTCAGGAAG
CATTTGATCCACAAAGAACTCGAATCTCTTATCAGGAAGAGAAGCATAAT
CATCAACATTGATACGACGGAATACTTGTGGGATCTCTGAAACAACATGC
TGCACAGTTCCTGGACTGTCTGTAACGACCCATTTTGTTTTCccagcaaa
attttgaaaatatctatTGAAGATACTGTTGATTTCTGGTGTGGGGAAGG
ATGAGAAGATGAGGTTTTGTCGATAATATCTGGACCATTCATTGATTGAC
CACATTCGGACACGGGAGATATCTGTATCGTGAGTACTCTTGGGTCTTCT
GTTAATGTGATCTAATACAGTGATAAGATGATCCCAATTTTGCATTAAGA
AGACTTCAGCTTGATCTATAATTAGCAACTCGATTgatgaaagaaaatca
aaatcttgCTTTTCTCCTTTCCCTCCAATCAATGTGCGCAAACCAAGAGG
TGATGCAATAATAATATCAGATGAATAAAAATGAGTGTAAAGTTTCATAG
TGTTTTTGGAAAGGGAAATACCAATACGAAAGCCATCATCTATGTTACCC
TCAAACATCAGCTTAAAATCTTCAGGGCGGTATCCTTGATGGCTTGCCTC
ATctgaagaaaattctttctgaAACCTCTTCTTGTTCATTATCTGCACTT
TCTTTTCATTCCCGAACAACAACTTCttcaaaacattcacaatctttAAG
CAAGAATCTTTGAAAGGTACAACAATCAACACTTTTGGACGGGTGATTCC
TTGGTCACGGAGCTCCTCCTCTATTCCAATACCAGCTTCAGCAGCACTTT
GTAATTTAGCATTATGTTTGAGAAATTTTGTACGTGTTTTCAAAACATGA
TTTACAGCATGAAGCGAATACAGCTTTCTAATTTCCTCTCCATTATGAAA
ATTACGACCAGTGTAGCATAAATCTTGGTAAGAAAATATAGGTTTCAAAA
GTTCCCTTTGAAGCCCAGTAAGGTTTTCTTTAGACTTTTTAGCCTTGTTG
ACAACACTCCAATTTTGTGACAACTTCTCCTTTACAGAAACCATTCCAAA
ATTGAGAAGAGGGGAGTTAAACTCTACAATATGCtctgaaatatctttca
tattttcaaaactgaatTCATCAACAGTCATGccagcttttttgaaagtt
ttgactTTTTGCATTTTGACATTTGATTTGAAAGCATCTACAATGTTTTC
TTCCAGAGTTTGTTCAAAATGAACACTAAATGGATCAGTAGAATCAACAA
CCTCTTCTTCAATTTCAagatcactttcattttcagaagctgTCCCAAAA
TCTTCCTCGCTCCCTTCTTCTCCTTCAGTTTCTACTTCGTCTTCACTCTC
TTTTGTGACACTCCCATGAAGATCTTCCTTTGATTGTCTTcctttcttta
acagattcttgAGCAACTTTTTGGCTGGTTGAAGCTCTCCTAGCAACTTA
TTGATATCCCCATGCATTTCAGTAGAGTGTTCATCATCGTCATGCTTTCT
TTTCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00054861-exon-scaffold_245-1491911889:250401..252931 | TCONS_00054861-exon-scaffold_245-1491911889:250401..252931 | Clytia hemisphaerica | exon |
| TCONS_00054861-exon-scaffold_245-1510915933:250401..252931 | TCONS_00054861-exon-scaffold_245-1510915933:250401..252931 | Clytia hemisphaerica | exon |
| TCONS_00054861-exon-scaffold_245-1575043694:250401..252931 | TCONS_00054861-exon-scaffold_245-1575043694:250401..252931 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_245 | supercontig | scaffold_245:250401..252931 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR010678 | Digest_organ_expansion_fac-prd |
| IPR027417 | P-loop_NTPase |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005634 |
nucleus |
Blast
BLAST of TCONS_00054861 vs. Swiss-Prot (Human)
Match: DIEXF (Digestive organ expansion factor homolog OS=Homo sapiens GN=DIEXF PE=1 SV=2) HSP 1 Score: 468.389 bits (1204), Expect = 5.713e-152 Identity = 262/578 (45.33%), Postives = 373/578 (64.53%), Query Frame = 2
Query: 746 DPFSVHFEQTLEENIVDAFKSNVKMQKVKTFKKAGMTVDEFSFENMKDISEHIVEFNSPL-LNFGMVSVKEKLSQNWSVVNK-----AKKSKENLTGLQRELLKPIFSYQDLCYTGRN-FHNGEEIRKLYSLHAVNHVLKTRTKFLKHNAKLQSXXXXXXXXXXXLRDQGITRPKVLIVVPFKDSCLKIVNVLKKLLFGN-EKKVQIMNKKRFQKEFSSD--EASHQGYRPEDFKLMFEGNIDDGFRIGISLSKNTMKLYTHFYSSDIIIASPLGLRTLIGGKGEKQ-DFDFLSSIELLIIDQAEVFLMQNWDHLITVLDHINRRPKSTHDTDISRVRMWSINEWSRYYRQNLIFSSFPTPEINSIFNRYFQNFAGKTKWVVTDSPGTVQHVVSEIPQVFRRINVDDYASLPDKRFEFFVDQMLP---DLVKNQKSIAIYIPSYFDFVRVRNYMKKEEIGFVQISEYTKKSYSSHARTLFREGRKQFLXXXXXXXXXXXXXXXXXXNLVFYDIPLYPQFYPEVVNFIKTDDK--EGSPSCTALFSRYDALKLQGVVGTERMKKMM-SGKAVHMIVTGK 2428
DPF H + L+E + A +N K + G F+ ++ F P ++ + +++ L W+ N +KS T LQ+EL + SY+DL Y R NGEEIR +Y LH +NH+LK + L +N++ +S ++ RDQG+TRPKVLIVVPF+++ L++V + LL G+ +KK+ + NKKRFQ E+ SD E RPED++ +F GNIDD FRIG+++ + +++LY FYSSDI+IASPLGLRT+IGG+GEK+ DFDFLSSIELLIIDQA+++LMQNW+H++ +++H+N P +H D SRVRMWS+N WS+YYRQ L+F + +INS+FN+Y N G+ G++ HV+ ++P VF+R+ ++ AS+ D RF FFV+++LP D V + IYIPSYFDFVR+RNY KKEE+ F I EYT+KS S AR F +G KQFL+FT RF FY RY I GIRNL+FY++P YP FY E+ N ++ ++ E + +CT L+S+YDA +L VVG ER +M+ S K VH+ +TG+
Sbjct: 188 DPFLQHVNKELKEKAIQAVATNPKTTHELKWPILGQLFFSSKFQKLET-------FKPPKDIDLKSLHLQKPLESTWTKTNSQFLSGPQKSSSPFTPLQKELFLIMNSYRDLFYPERTALKNGEEIRHVYCLHVINHILKANAQVLGNNSRRRSQKFGVGDDDD-FRDQGLTRPKVLIVVPFREAALRVVQLFISLLEGDSKKKIIVSNKKRFQGEYGSDPEERPPNLKRPEDYEAVFVGNIDDHFRIGVAILQRSIRLYAPFYSSDILIASPLGLRTIIGGEGEKKRDFDFLSSIELLIIDQADIYLMQNWEHVLHLMNHMNLLPLDSHGVDFSRVRMWSLNNWSKYYRQTLLFGALQDAQINSVFNKYCVNMQGQVAVRNVPMTGSISHVLVQLPHVFQRMEAENLASVIDARFNFFVNKILPQYRDAVMSH--TLIYIPSYFDFVRLRNYFKKEELNFTHICEYTQKSGVSRARHFFLQGEKQFLLFTERFHFYKRYTIKGIRNLIFYELPTYPHFYSEICNMLRATNRGEEATWTCTVLYSKYDAQRLAAVVGVERAAQMLQSNKNVHLFITGE 755
The following BLAST results are available for this feature:
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