TCONS_00054744 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054744
Unique NameTCONS_00054744
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length907

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054744 ID=TCONS_00054744|Name=TCONS_00054744|organism=Clytia hemisphaerica|type=transcript|length=907bp
AAATCATTTTTTATCAGCAAAGTCAGTTAGGCTTGGTCAAGTTGGTCATG
TCAACATTGTTCAAAGACAGCCATACGAACACGCACGTGTCATCATGGAT
GTTCTAGCAAAACGACCGAAACTAAAGAAATGTGCCAAATTGAATCTTCA
TGCTTCCCTGACAAAGttaTAAGCTACAACACTGGTTTATGGGGCAGTTG
GCGTTCATGGGAGTATTGCCCAAAAGGAACCTGGGTTGTCAAGCTACAAA
CAAATATCGAAAGCCACCAAGGAGATGGCGATGACACGGCATTAAATGCG
ATCTCTTTAAGATGTAACAATGATGTTGGCACTACCATCACAAGTGGATA
CACCAATTGGGGCACTTGGCGAGCCGAGTCACAAAAATGTATTAATGGAT
TTTACGGTGgaatgctaaaatttgaaagCCACCTGgggCCTGATGATGAC
GATACTTCGACCAATGCCATTCGTTTGATATGTCGAGATGACAATCAGTG
GTACGAAAGCGGTGAAGGTGGTTGGGGTTCATGGACACAAAGCACTTACT
GTCCTGCTGGCTACAAAATTGTTGGTCTTCAAACACAGATCGAAAGTGAC
CAAGGGAATGGCGACGATACTAGTTTAAATGGTGTTCGATTGTTGTGTCG
ATATTTTGGATAATGCAATGGTGCGTGATACGGATAATTGATAAAGGGGG
AGTTTGTGCATTTTTACTTGAACTAATTATTACaaattgtatactttttt
tgttttgttttgttaattaTAGTAGAGggtattttgtaaaatcgctcgat
tgttttgttagaagcactttttatacatttttggaaccttcaaccttaga
gaaatcgaaattacgatgcttctaaatttttttcggacactttgatgtga
ttttcgg
Run BLAST on NCBI

transcript from alignment at scaffold_245:10936..14174+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054744 ID=TCONS_00054744|Name=TCONS_00054744|organism=Clytia hemisphaerica|type=transcript|length=3239bp|location=Sequence derived from alignment at scaffold_245:10936..14174+ (Clytia hemisphaerica)
AAATCATTTTTTATCAGCAAAGTCAGTTAGGGTAAACAAAATCATGGTAT
TCCATAGGGTTAAAGAATTTTCTAATCGGAATTACATAGAGGTAAGGGAT
TTGTAGATCCGGAATTCCATAGGAGCAGATGATTTGAAGTTCCAGAATTC
CATAGGGGTAAGGGAATTTTCGGTCCGGAATTCCATGAGGGTGCACCTAA
AAAAAGNGACGTAAAAAGAAATCACCTTTTTATTGGAAATCTAATTGTTT
ACGCGCTTCTTAAAGTGTTGGATTATAGGAATCAGCTGGCGATTCTTGAT
GTTACGTTTTATTCTTGCTTGACTAGACCCAAATCATTTTTTATCAGCAA
AGTCAGTTAGGGTAAACAAAATCATGGTATTCCATAGGGTTAAAGAATTT
TCTAATCGGAATTACATAGAGGTAAGGGATTTGTAGATCCGGAATTCCAT
AGGAGCAGATGATTTGAAGTTCCAGAATTCCATAGGGGTAAGGGAATTTT
CGGTccggaattccatgggggtgcACCTAAAAAAAGgaacctcctcaaca
ggggggtaCGGACTTtatctggaaaagcccattgcagaaattgaaaatat
gttttcttCAGTAGATCAGCTTTTGCCTCTAAGGTTTCCCTGAGCTTTCA
TGGCGTTTGAATTTGAAGACTGTATTATGATTCATgatcatccaaaaatt
ttgaagccgcTTCGGATGTTGTCAatattttgggtatttttgtccatttt
cctaaaagaaaatgggtattttagagtccacggagccttaaaatgttctt
aacttgttcttaatattttggccattgaagccttttgttcttatatagtt
tgttcttactaGATTTTTTGGCaagttttttaagcaaagtATAACTATTA
TCCTGCCGCTCGTACTGTCTTCAAGAAAATTGGGAACTGATTTCTCTTTA
TCTTGTATTCTTTTACCAGCTTGGTCAAGTTGGTCATGTCAACATTGTTC
AAAGACAGCCATACGAACACGCACGTGTCATCATGGATGTTCTAGCAAAA
CGACCGAAACTAAAGAAATGTGCCAAATTGAATCTTCATGCTTCCCTGAC
AAAGGTAATGCAACCCTGTCTCAAGTGAAAGTGCTTCTTAGTTTTTTAAA
GAGGAAAACAAGTACTTGACAGGGTTATTATTCACTGGGGACGAGTTTAG
CCGCATTCGGTGAAGGGTTTTTACGTCAAATACTGAATGTGGATTTTGTT
AATTTCAattattgccccgcaggggaTTTTGTTCCTTCACGTAGtggact
tgctcgccagaaaaatattcatgtcgTTGATGTTTCTTCCGATTCTGAGC
GGACCGCCGCTGTTAAAAAATGGTCACGCGCACCTATTGTTTTGTCTACT
TTGTTGCGACTTGTATTGATTTTAGTTCTATTCTATTCTTCTATTTATTA
AATTCTatattcttacaaagtaaaacagggacagtgcacaatatgtgcat
tatttttcttataaacacaAACTTTATTAGAATCatatcaataactcttg
atagacagccatATACTTGGTAATTAGTTCCTACAAagtaacaacaacaa
caagggatatttaaaagatattttactgTGTGCGCCAAGCTGTACACCTC
GTTTCTTTTTTATCAGCCAATCAGTTCATTCTCAATTATGAATGCGTTCG
CGAGGCATTCATAGCGCGACcgctacttgctagtataacCCAAATAGAAC
GGTCGTAGCGATAATTACTTTTGGAAGTTGCCACTGCCAATTTTCTTTAG
CTCAAATTTACTTTTCATTCAATCTACACACATATACCATCTATCTAcac
taaaaaattattttttagttaTAAGCTACAACACTGGTTTATGGGGCAGT
TGGCGTTCATGGGAGTATTGCCCAAAAGGAACCTGGGTTGTCAAGCTACA
AACAAATATCGAAAGCCACCAAGGAGGTATAGAAtctttcataaaaagtt
gtttccgAGAATTTCATGGCATGGTTTTTTAAAATCTCTTCAGTTCCTGC
CAAGTATAATTTTCATCGTTCttgaaattaatcaaaatacaaaattatct
CGGGTTATAAATTGGTTCTCAGGGCAAATTTTCTTATGAAATGGGTTCTA
TGGTAAATACATGTGTTTTATATCTTATCTTAGAGCAGTTACAACTCTAG
ATAGAGAGATAGGAATTTACTACTCACTATAGCTAGATACTGATAGTttt
taataaagtttttctCTTTGTTCAATGTATGTCTCTTTTTATTCCAGATG
GCGATGACACGGCATTAAATGCGATCTCTTTAAGATGTAACAATGATGTT
GGCACTACCATCACAAGTGGATACACCAATTGGGGCACTTGGCGAGCCGA
GTCACAAAAATGTATTAATGGATTTTACGGTGgaatgctaaaatttgaaa
gCCACCTGGTAATACAAATTGGACTTCTGTAACTTATCATCTCCGAAGAA
TCAAAAtatcattttaaggcttttaaatTTTCCAGCAGTCAATAATTTCG
TTTCTCAAGAACCAAGAACTCAAATTTACCCCGGTTTAAAAGTCATCTTA
TTGAGTtgatattttaaaagttgataTACCATTACACCTCCTTAATAAAG
TTTGATTACATAGATCCTTCTACTCTtcttatcaaaatatttattcaaat
tcCAACCCCTCCCACGTGCTAAAATTACCTTGTAAGAAATAAACCTTATt
ttataatgaattttcaggggCCTGATGATGACGATACTTCGACCAATGCC
ATTCGTTTGATATGTCGAGATGACAATCAGTGGTACGAAAGCGGTGAAGG
TGGTTGGGGTTCATGGACACAAAGCACTTACTGTCCTGCTGGCTACAAAA
TTGTTGGTCTTCAAACACAGATCGAAAGTGACCAAGGGAATGGCGACGAT
ACTAGTTTAAATGGTGTTCGATTGTTGTGTCGATATTTTGGATAATGCAA
TGGTGCGTGATACGGATAATTGATAAAGGGGGAGTTTGTGCATTTTTACT
TGAACTAATTATTACaaattgtatactttttttgttttgttttgttaatt
aTAGTAGAGggtattttgtaaaatcgctcgattgttttgttagaagcact
ttttatacatttttggaaccttcaaccttagagaaatcgaaattacgatg
cttctaaatttttttcggacactttgatgtgattttcgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034492XLOC_034492Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054744-exon-scaffold_245-1491911889:10936..10966TCONS_00054744-exon-scaffold_245-1491911889:10936..10966Clytia hemisphaericaexon
TCONS_00054744-exon-scaffold_245-1510915933:10936..10966TCONS_00054744-exon-scaffold_245-1510915933:10936..10966Clytia hemisphaericaexon
TCONS_00054744-exon-scaffold_245-1575043694:10936..10966TCONS_00054744-exon-scaffold_245-1575043694:10936..10966Clytia hemisphaericaexon
TCONS_00054744-exon-scaffold_245-1491911889:11905..12039TCONS_00054744-exon-scaffold_245-1491911889:11905..12039Clytia hemisphaericaexon
TCONS_00054744-exon-scaffold_245-1510915933:11905..12039TCONS_00054744-exon-scaffold_245-1510915933:11905..12039Clytia hemisphaericaexon
TCONS_00054744-exon-scaffold_245-1575043694:11905..12039TCONS_00054744-exon-scaffold_245-1575043694:11905..12039Clytia hemisphaericaexon
TCONS_00054744-exon-scaffold_245-1491911889:12804..12911TCONS_00054744-exon-scaffold_245-1491911889:12804..12911Clytia hemisphaericaexon
TCONS_00054744-exon-scaffold_245-1510915933:12804..12911TCONS_00054744-exon-scaffold_245-1510915933:12804..12911Clytia hemisphaericaexon
TCONS_00054744-exon-scaffold_245-1575043694:12804..12911TCONS_00054744-exon-scaffold_245-1575043694:12804..12911Clytia hemisphaericaexon
TCONS_00054744-exon-scaffold_245-1491911889:13233..13393TCONS_00054744-exon-scaffold_245-1491911889:13233..13393Clytia hemisphaericaexon
TCONS_00054744-exon-scaffold_245-1510915933:13233..13393TCONS_00054744-exon-scaffold_245-1510915933:13233..13393Clytia hemisphaericaexon
TCONS_00054744-exon-scaffold_245-1575043694:13233..13393TCONS_00054744-exon-scaffold_245-1575043694:13233..13393Clytia hemisphaericaexon
TCONS_00054744-exon-scaffold_245-1491911889:13703..14174TCONS_00054744-exon-scaffold_245-1491911889:13703..14174Clytia hemisphaericaexon
TCONS_00054744-exon-scaffold_245-1510915933:13703..14174TCONS_00054744-exon-scaffold_245-1510915933:13703..14174Clytia hemisphaericaexon
TCONS_00054744-exon-scaffold_245-1575043694:13703..14174TCONS_00054744-exon-scaffold_245-1575043694:13703..14174Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:10936..14174 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.88318e-06	4.73999	0	0.98652	0	0	0	0.393349	1.61707	1.84484	1.4067	1.63608	2.57851	2.2787	2.3481	4.29268	2.12865	1.57036e-05	0.0465263	0.115542	0.322194	0.450157	0.920152	2.23471	0	0	0	0.0872066	0.739852	0.515499
Blast
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BLAST of TCONS_00054744 vs. Swiss-Prot (Human)
Match: VMO1 (Vitelline membrane outer layer protein 1 homolog OS=Homo sapiens GN=VMO1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.327e-17
Identity = 59/163 (36.20%), Postives = 77/163 (47.24%), Query Frame = 1 
Query:  184 GLWGSWRSWEYCPKGTWVVKLQTNIESHQG-DGDDTALNAISLRC--NNDVGTT--ITSGYTNWGTWRAESQKCINGFYGGMLKFESHLGPD---DDDTSTNAIRLICRDDNQWYXXXXXXXXXXTQSTYCPAGYKIVGLQTQIESDQGNGDDTSLNGVRLLC 648
            G WG W   E CP G +       +E  QG  GDDTALN I L C   N +G T  + S   +WG W +E   C  G Y  ++ F   +       D+T+ N +R  C D  +    G         S +CP G    GLQT+I+  +G GDDT+LN  RL C
Sbjct:   42 GPWGDWAWPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHVVESQSGSWGEW-SEPLWCRGGAY--LVAFSLRVEAPTTLGDNTAANNVRFRCSDGEELQGPGLSWGDFGDWSDHCPKG--ACGLQTKIQGPRGLGDDTALNDARLFC 199
The following BLAST results are available for this feature:
BLAST of TCONS_00054744 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VMO12.327e-1736.20Vitelline membrane outer layer protein 1 homolog O... [more]
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