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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054244 ID=TCONS_00054244|Name=TCONS_00054244|organism=Clytia hemisphaerica|type=transcript|length=657bp
CTCGTTAGTAATATTCTTTAACATACCTATTTTTCTATTCAGATTATTTA
CATGTATCGCAATCCAAGAGATGTTTGCCAATCAGCTTTCAATCACTTTA
AAACACTTCATAATGATTTTTCTGGAACCTTGCAAGATGTGGTAAACCTA
ATGACCAACGATGTGGGAAATGCATTCGGTCCATATTTCAAGCATATTTT
GGGATACTGGAATCGTCGTTTGGATGAAAACTTACTGGTCATTTCCtatg
aagaaatgaaaaaagatttctcTGGTCACATCAAGAAGATATCTGATTTC
TTAgacattgaaatttcaaatgagGATTTGGTTGCTTTCACCAATCGTTT
TTCTTTTGAAACGATGAAAGCAAATGCTGAAAAAATGCTTTCGTTCAATG
CTAGCCAAAAAAACTTCAGTTCAACTGTTCACGCTGCCTTGAAAGGAAAA
ACAATGTTTAACAAAGGACAAATCGGATCATGGAAGGCTTTGTTTACACC
AGAGATGACTAACCAAATGGAAGAATGGGAAACAAAATGGTTGAAAGATA
CTGATCTCAAATTAATTTATGAATAGTGCTGAAAACATGAAATAAACAGG
TTTAAACAGATTTCTTGAATGTAATTACCCATAGAAGGCGGATAACGTAG
ATATCGA Run BLAST on NCBI protein sequence of TCONS_00054244-protein >TCONS_00054244-protein ID=TCONS_00054244-protein|Name=TCONS_00054244-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
MYRNPRDVCQSAFNHFKTLHNDFSGTLQDVVNLMTNDVGNAFGPYFKHIL
GYWNRRLDENLLVISYEEMKKDFSGHIKKISDFLDIEISNEDLVAFTNRF
SFETMKANAEKMLSFNASQKNFSSTVHAALKGKTMFNKGQIGSWKALFTP
EMTNQMEEWETKWLKDTDLKLIYE Run BLAST on NCBI transcript from alignment at scaffold_242:1070762..1072354+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054244 ID=TCONS_00054244|Name=TCONS_00054244|organism=Clytia hemisphaerica|type=transcript|length=1593bp|location=Sequence derived from alignment at scaffold_242:1070762..1072354+ (Clytia hemisphaerica)
CTCGTTAGTAATATTCTTTAACATACCTATTTTTCTATTCAGATTATTTA
CATGTATCGCAATCCAAGAGATGTTTGCCAATCAGCTTTCAATCACTTTA
AAACACTTCATAATGATTTTTCTGGAACCTTGCAAGATGTGGTAAACCTA
ATGACCAACGATGTGGGAAATGCATTCGGTCCATATTTCAAGCATATTTT
GGGATACTGGAATCGTCGTTTGGATGAAAACTTACTGGTCATTTCCtatg
aagaaatgaaaaaagatttctcTGGTCACATCAAGAAGATATCTGATTTC
TTAgacattgaaatttcaaatgagGATTTGGTTGCTTTCACCAATCGTTT
TTCTTTTGAAACGATGAAAGCAAATGCTGAAAAAATGCTTTCGTTCAATG
CTAGCCAAGTTAGTAACTTTAGTACCttatttttcataattaaaTCTGTT
TTGTGTCTAATCCAGGGGTATCATGTATACAAGAAAAAGATCACATCAGA
TCACACGGGTGATCTAATTTCGCgtgtaattttttaaaactgaTTAAGTG
TGATTTTCTTTgcattgtgatttttgatatcACTGCGTAATTTTCCAAAC
ATTTGATTGCACTTTTTAACCTTGACGTGTGAGATCGAAATAAACACTCA
TAACccaaacaaaaaagttttaatgaAAATCTCATGTGTCATttctaatt
tctgctgacgaattatttttatttttatatatttttattacgaATTATAA
TTAATTTTGAGAGTACGTATACGCAGGGTGTTACCAGTGCTCTTGAAAGA
AATACGGCGACTTCACTGAGAACGTAAAGCAAATCTTAATTTGAATTTGT
ATAAGTgcttaaaggcttggggacacgagaagttttttttttgcgttggt
gcaatgcaacatgctccatcccaccaacacaagtaAAAAAGTAATCTCTG
CTCTTCATCTTTGGTACTTTTGATAGTGATTAGactgacacatgcgcgat
aaaactCTGACACTTGGTTGCCACAGGCTGATATTTCAAACAAGGCTCAA
GATGTTGTGCCCGCAATATAAAGATCTTACACCGTCGCTATGAtcatttt
tctttgtgttgaatAATCGATGAATAGAATCGCTATTCGTCTTCACAGGT
CGAAATACGAGTAGGTCATCAACTTTGAACCTCCTCCGATTTCGATGGCT
CCAATATACAATTTTGTACCCTGAGCGACTTTCAACAGTTTTTAATATCA
TTGATAGACTTAGTATTTCCAGTAAAGGCTAGTCTTAAAAGAACAATGTT
GCGACTAAATTATTCatgataaaactttttttattactATGTAGAAAAAC
TTCAGTTCAACTGTTCACGCTGCCTTGAAAGGAAAAACAATGTTTAACAA
AGGACAAATCGGATCATGGAAGGCTTTGTTTACACCAGAGATGACTAACC
AAATGGAAGAATGGGAAACAAAATGGTTGAAAGATACTGATCTCAAATTA
ATTTATGAATAGTGCTGAAAACATGAAATAAACAGGTTTAAACAGATTTC
TTGAATGTAATTACCCATAGAAGGCGGATAACGTAGATATCGA Coding sequence (CDS) from alignment at scaffold_242:1070762..1072354+ >TCONS_00054244 ID=TCONS_00054244|Name=TCONS_00054244|organism=Clytia hemisphaerica|type=CDS|length=1050bp|location=Sequence derived from alignment at scaffold_242:1070762..1072354+ (Clytia hemisphaerica)
ATGTATCGCAATCCAAGAGATGTTTGCCAATCAGCTTTCAATCACTTTAA
AACACTTCATAATGATTTTTCTGGAACCTTGCAAGATGTGGTAAACCTAA
TGACCAACGATGTGGGAAATGCATTCGGTCCATATTTCAAGCATATTTTG
GGATACTGGAATCGTCGTTTGGATGAAAACTTACTGGTCATTTCCtatga
agaaatgaaaaaagatttctcTGGTCACATCAAGAAGATATCTGATTTCT
TAgacattgaaatttcaaatgagGATTTGGTTGCTTTCACCAATCGTTTT
TCTTTTGAAACGATGAAAGCAAATGCTGAAAAAATGCTTTCGTTCAATGC
TAGCCAAAAAAACTTCAGTTCAACTGTTCACGCTGCCTTGAAAGGAAAAA
CAATGTTTAACAAAGGACAAATCGGATCATGGAAGGCTTTGTTTACACCA
GAGATGACTAACCAAATGGAAGAATGGGAAACAAAATGGTTGAAAGATAC
TGATCTCAAATTAATTTATGAATAGATGTATCGCAATCCAAGAGATGTTT
GCCAATCAGCTTTCAATCACTTTAAAACACTTCATAATGATTTTTCTGGA
ACCTTGCAAGATGTGGTAAACCTAATGACCAACGATGTGGGAAATGCATT
CGGTCCATATTTCAAGCATATTTTGGGATACTGGAATCGTCGTTTGGATG
AAAACTTACTGGTCATTTCCtatgaagaaatgaaaaaagatttctcTGGT
CACATCAAGAAGATATCTGATTTCTTAgacattgaaatttcaaatgagGA
TTTGGTTGCTTTCACCAATCGTTTTTCTTTTGAAACGATGAAAGCAAATG
CTGAAAAAATGCTTTCGTTCAATGCTAGCCAAAAAAACTTCAGTTCAACT
GTTCACGCTGCCTTGAAAGGAAAAACAATGTTTAACAAAGGACAAATCGG
ATCATGGAAGGCTTTGTTTACACCAGAGATGACTAACCAAATGGAAGAAT
GGGAAACAAAATGGTTGAAAGATACTGATCTCAAATTAATTTATGAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054244-exon-scaffold_242-1491911889:1070762..1071169 | TCONS_00054244-exon-scaffold_242-1491911889:1070762..1071169 | Clytia hemisphaerica | exon |
| TCONS_00054244-exon-scaffold_242-1510915933:1070762..1071169 | TCONS_00054244-exon-scaffold_242-1510915933:1070762..1071169 | Clytia hemisphaerica | exon |
| TCONS_00054244-exon-scaffold_242-1575043694:1070762..1071169 | TCONS_00054244-exon-scaffold_242-1575043694:1070762..1071169 | Clytia hemisphaerica | exon |
| TCONS_00054244-exon-scaffold_242-1491911889:1072106..1072354 | TCONS_00054244-exon-scaffold_242-1491911889:1072106..1072354 | Clytia hemisphaerica | exon |
| TCONS_00054244-exon-scaffold_242-1510915933:1072106..1072354 | TCONS_00054244-exon-scaffold_242-1510915933:1072106..1072354 | Clytia hemisphaerica | exon |
| TCONS_00054244-exon-scaffold_242-1575043694:1072106..1072354 | TCONS_00054244-exon-scaffold_242-1575043694:1072106..1072354 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1070762..1072354 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008146 | sulfotransferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0008146 |
sulfotransferase activity |
Blast
The following BLAST results are available for this feature:
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