TCONS_00005306 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00005306
Unique Name	TCONS_00005306
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3014

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000052:629072..637959+

transcript sequence

>TCONS_00005306 ID=TCONS_00005306|Name=TCONS_00005306|organism=Clytia hemisphaerica|type=transcript|length=3014bp
TCTTATTATTTTACTGTACCTAGGATACCCATTTACTATGGAATCACTTT
TTCATTGAGCCTTTCGGAATCCATGTAATAAGTTAAGTTGGCTTCTATTG
AGGCTATACAGAACTAACCAAGGGTAtcaattctttaaaatgatATCAGA
TAGAAATTGACAATTCTTGTGATATTGAAGTATCAAATCTTCCTTTTTGA
GACAAAGTTAAGTGTAAGTTATGACTACAATTTGTTACGGTGATAGAGAA
GTATGCTgatattttgaaaggaaaaacaCTTCATATTTTGTTGGATAAGc
aGATCACAGAACAACCTCGAACAACAAGaaggaaaacaagaaaaaaggaC
AAAAGTGAATCAGCAAACTCAGAAGAATCGCTACAAATAACAGATATTGA
CTCATTTAAAGCTTATTTAACTGCCAACACAAGTTATGACAGCATTGTTG
AAAATGAGTGTGACGATGAGCTTAAGAACATGCATTTCAAATTACCTGAG
GTTGTCCCACACattgatttaaaaaacattGTTAAATGCCATCACTTGGC
TGAGAACAACAAAGGAGTGGTTGCATCTTCCTCCATCGCTTCGGGCAACT
TGATTCTTGAGTATATTGGAACCTTGATGTCGTTAAAGAAATTCGAAGAT
CAGAATCCAAACTTTCAACATAATTGCCCGTTNCAAGGAGTGATTGCAAC
TTCCTCCATCGCTTCCGGCAACTTGATTCTTGAGTATATTGGAACCTTGA
TGTCGTTAAAGAAATTCGAAGATCAGAATCCAAACTTTCAACATAATTGC
CCGTTTGTTATCAAATATATGAAAATTGAACCGTTCCCTATTGTGATAGA
TGCAAGGAAAAATGGAAATGACGCACGCTTTTTACGGAGATCTTGTCAAG
CAAATGCAGAGTTGAGGCATTTGACACACAACGGTTCTCTACATATAATG
GTCATCAGTGTTGTTGAAATCCTACAGAACCAAGAGATCACTGTCCCATT
TGATCCAGACTCAGATCTACCTGGATACATTGACTGTGCTTGCGGCCAGA
AGACTTGCCCAATGTCCATAGCAACACCGAATACTAAAAAAGACATTATT
CCCAAAAAGGAATCACCGATATCAGAGAGAACAGAACCTATAATAAACAC
TGAAGAGGTTTTAACTAAGACAGAAATGTTGCCTGATAATCAACAACACG
CCCtacaaaacgaaagtgaaagtgaggGTGGTGACGATCCCCGACACGAG
AAACTTTCCAGGGAAGAACGTAAATTACAAGCACTCATGAAACAGTTcga
aaaattagataaaaaaaatgacaCTAGTAAACACAGACAACATCAACACC
ATAAAGATGGGAAAACACCCCATTCAAGGACCACAAGTATTAGTTTAGAC
GACCCGCCCACCCCGGTGACAAACTCGACACCTCAGAAAGTGGGCTCGAC
AACGAAGAAGATCACAAATAAACGGAAAAGTATGGGAGTGAATGGCAAAA
GCAGGCGGACTCGACAATCAAGTTGCTCATCTGAACCTGTCTCACCTTCG
GAGGCAGACCACCAGCAGATCCATAGTAATGTCTCCACTCCAACTTCAAA
TGCCAGTACAACCATGGAAAGCTCTATCTTTACAAGACAAAAAGCCAGGC
GAGAAAAGGAGCCACTTACACTGACCCTGCCCATCCAACGGAGACCACGA
AACGCAAACTCCCTCACAAGCCCAACGCCACCAGTTACTCCAAGTCTGGA
CGCCCACCACCCTTCAATTGACGCTACCAACCTCTCTCTAATGGTGGAAA
CTCAATTACCAATAAGTATGGAGTCAACCTCCTCCACTCCTGTTAAAACT
AACCCTCTCGGATTGTTACAGATTGCAAGAAACAACTTTAATAACCATCC
AACTGCATCAATCGGCCATTCCACAGCTGAAGAAAAAATAGGCAACTTTT
TATCACGACAAGACAGCTATTACGAGACTCCTCTTGCGTCACCCTCTGGT
AAACTTCACCAGAGATGCCTGCAAAGACAATACTATGGCTCACTTAAAAA
GCATTGGCTTCAGAAGCACTCATCTCCACGTCACCAACGGAGAAATATCA
AGGGTAGTAGCGAGCAGATTTGTTTGGCTGCTTTAATTGCCACTCTTGAT
CCCAAGAGACATGAAGAGAATGCTCAAACGACCAAACACGTTTTCAAGAA
GCCCTCAAatTATATCCCTTTGAAGAAAAGGTATATAAAACGGGCTGCTC
AACGGATAGAAGCGCAACAAAATAGACTAGTGGATGACTCTTTTAACTCT
CATAAAGAATCAAACATAACGAACCTTTTATCGAACGCCAGCagtttcaa
acaatttttaccGAACGGTAAGGGACACACACCTTCAGGGCTACCACCCT
CGTCATTGGGGCGTGATTTTAGTAACGATAGTAGTAGAGACTTGCAGAGT
ATACAATCACTATTGTCTGATAAACTGAGCGATATTTTAACGAGAAAAGA
CAGTACGTTCAATGGCGTTGCACATGCGCAGCTCCTCACGCCTCAAAAGT
CTCCTAAAGTTACGGAGTCGTCGGCTCCTCTAGTAAGGACTACAAATTCT
TATGGTGAATTTATGAATGGTTATAGAATCAGTAACGCGGTGTCAGAAAG
ACTAATGAGCTCAACAAATGCTATTTTATCAACGACCATTTCTGATCCGA
GATTATCTTCGGTCGCCGGTACTAAACGCCCCTCAGCCGAAACGGAGGAA
CCACTGGCAAAGAAAATCAAGTCGGACGAAAAGGAGAGTTTAATTTCGGC
GCCGCTAACGACGACAACTTTGATGACGACGTTAGGGTCCACACCCACGC
ATCAAGAACTTCACATAAATACAACAAATAATACACAATTATCCGTAGTA
AGTAGGACTCTAACGCCTAATCCGTCGACTGTGGCAACGTCTTCAGATTT
AACGTCCAAAACGCCGGAAACGGACGAAAGCATGACGCTAAATTCAATGA
CCTCGTCGCCGGNN

Run BLAST on NCBI

transcript from alignment at sc0000052:629072..637959+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00005306 ID=TCONS_00005306|Name=TCONS_00005306|organism=Clytia hemisphaerica|type=transcript|length=8888bp|location=Sequence derived from alignment at sc0000052:629072..637959+ (Clytia hemisphaerica)
TCTTATTATTTTACTGTACCTAGGATACCCATTTACTATGGAATCACTTT
TTCATTGAGCCTTTCGGAATCCATGTAATAAGTTAAGTTGGCTTCTATTG
AGGCTATACAGAACTAACCAAGGGTAtcaattctttaaaatgatATCAGA
TAGAAATTGACAATTCTTGTGATATTGAAGTATCAAATCTTCCTTTTTGA
GACAAAGTTAAGTGTAAGTTATGACTACAATTTGTTACGGTGATAGAGAA
GTATGCTgatattttgaaaggaaaaacaCTTCATATTTTGTTGGATAAGG
TACTACAAATATACTTATTATGAATGTGGGAAATAATAAAGCATTGTCAT
AATCTTGATGCTTTAACAAACAACAAATAATTAAATTCTAGGTAGAATAT
GATTTGACTCTACTATTTGCCATGTAGTAGCATGTACGTATTTTGGACTA
CAGTATCATAACATTGTCACCATAAAGATAGAATTCTACCTTGTACAGGA
ATAAGCTTTGATTAAGaatttcttgttttctttttcagcaGATCACAGAA
CAACCTCGAACAACAAGaaggaaaacaagaaaaaaggaCAAAAGTGAATC
AGGTGATTTATCTTTTAAGCTTGTTTTTGCAGAGAGATTAAATCTATTAC
TTAATTTACTGTGTTGCCTCTCTCCTAAGACAAACCTGATAAAGGAGAAT
ATCACTTTAGAAAAATAATCTTATTTTTGCTCCAATGAATACCTAAAGTT
TGACTTGGTATAAGGTGTGTACGGCACTTTGGAAAAGCATAATTCTTATA
TAACATGTTTGTCTAGTTTAGACCAGACTATAGTCTAGCCATTTGTTTGG
AATATAATTTGTAGGAATCATATAAATGTCGTACTTTCCAGCATAATTCA
ATTTCCATTTCTTACCACAGCAAACTCAGAAGAATCGCTACAAATAACAG
ATATTGACTCATTTAAAGCTTATTTAACGTAAGTCATATAAAATTTGTAT
GTTTTCAAACGAATGGTTGACTGCTATGCTTCACTTTTGCACTCATTTAT
TATTATGAGGTGGTTTATTCTTTGAAGTTCTAGTTAGGTTCAAAATAATC
ATCTGGAATCATAGGGAAGAGCTAGATCaatgattttctgactttaaaaa
aagacactgcaaaatatatttcaaacttATTATTTTAGTGCCAACACAAG
TTATGACAGCATTGTTGAAAATGAGTGTGACGATGAGCTTAAGAACATGC
ATTTCAAATTACCTGAGGTAAGTAAAGTTTTGTTCCTATATGATGCTGGT
TTGCTCAAAATATGGATTTAAACAAAGGTGATTCAGGGTAGTCAGCTTAA
tggatattaatttttttttctgagctATGAAGTTTTATTGTAAGGCTTCC
GCTCCCTAATAATGAAATTGTGATTGAAATGTTGCTTGGGCTGCTCTTGC
CTTCAACTTATAATCATTACAACTTATAATCATTACCACCATTTCAATTG
TTTAAAACCTGGCGATGATTTATCTTTTTCTTCATTACTCAGGTTGTCCC
ACACattgatttaaaaaacattGTTAAATGCCATCACTTGGCTGAGAACA
ACAAAGGAGTGGTTGCATCTTCCTCCATCGCTTCGGGCAACTTGATTCTT
GAGTATATTGGAACCTTGATGTCGTTAAAGAAATTCGAAGATCAGAATCC
AAACTTTCAACATAATTGCCCGTTNCAAGGAGTGATTGCAACTTCCTCCA
TCGCTTCCGGCAACTTGATTCTTGAGTATATTGGAACCTTGATGTCGTTA
AAGAAATTCGAAGATCAGAATCCAAACTTTCAACATAATTGCCCGTTTGT
TATCAAATATATGAAAATTGAACCGTTCCCTATTGTGATAGATGCAAGGA
AAAATGGAAATGACGCACGCTTTTTACGGAGATCTTGTCAAGCAAATGCA
GAGGTAAGGGCTTCTTTTGAAGAGAGTATTCACTTAGctacaatccttca
agaaatatttgagacacaGGGGAATTcacggtgtaattttgaacaccaca
attgatttttaagcgccttaaactacagttggaaagtagagttttaactc
tgagttttaacatgagacttaagacttaggaccttaggatctcaggattt
aaaagctcaaatttgctcgaatgaggcttggaatatggcctagaagccac
caaagccccctaaaatcgaaatattcaatggaagaaagtggaagtgctga
aatggcaattctcgcccgaactttaaattctgaaaaacgttaaaatacac
taaaatctcaatatatttcaagggAGATTGTAGATACATATTGACTGAAT
ATTAGATATCTTGCATTTTATCTATTATCACTTTGGTTTGTCTTTTGTTC
GTTTGTTGtgtatgttttttgtttattcaatacAAGTTTTTAAACAGTGG
AATTTTCTCATACTCATTTTCTCTAGAAAAATTATATCATAACCATGTCA
TAATTTCTAATCTCAACTACATACTAAAAACAACCTTTTTCTCTACTTCT
AGTTGAGGCATTTGACACACAACGGTTCTCTACATATAATGGTCATCAGT
GTTGTTGAAATCCTACAGAACCAAGAGATCACTGTCCCATTTGATCCAGA
CTCAGATCTACCTGGATACATTGACTGTGCTTGCGGCCAGAAGACTTGCC
CAATGTCCATAGCAACACCGAATACTAAAAAAGACATTATTCCCAAAAAG
GAATCACCGATATCAGAGAGAACAGAACCTATAATAAACACTGAAGAGGT
TTTAACTAAGACAGAAATGTTGCCTGATAATCAACAACACGCCCtacaaa
acgaaagtgaaagtgaggGTGGTGACGATCCCCGACACGAGAAACTTTCC
AGGGAAGAACGTAAATTACAAGCACTCATGAAACAGTTcgaaaaattaga
taaaaaaaatgacaCTAGTAAACACAGACAACATCAACACCATAAAGATG
GGAAAACACCCCATTCAAGGACCACAAGTATTAGTTTAGACGACCCGCCC
ACCCCGGTGACAAACTCGACACCTCAGAAAGTGGGCTCGACAACGAAGAA
GATCACAAATAAACGGAAAAGTATGGGAGTGAATGGCAAAAGGTTGGTTT
GATTCTGCACCATGTGGTCTGTTTGGTCCACTTTGTTAGATCTAAGatca
tattattattatttataagCTTTATGAGAAACCTTAAGATAGCCAGGTGC
TGATAAAATGTGTGGCCAAGGCCCCTTAATGATGGATCTTTTTCAGATCT
AAAAGGCTAGGTAAGCCAAGATGGACTGGATCTAGTTTTCACAGTTTGAT
ACATAAAAAATACTCAGGGAATTCATCCCGCCATCCCAATATGAATAAGA
CCTAAAAATACTTGTTTTCTACTCTCTCCCTTCTCTCTTCTTAATCCAAC
AACAGCAGGCGGACTCGACAATCAAGTTGCTCATCTGAACCTGTCTCACC
TTCGGAGGCAGACCACCAGCAGATCCATAGTAATGTCTCCACTCCAACTT
CAAATGCCAGTACAACCATGGAAAGCTCTATCTTTACAAGACAAAAAGCC
AGGCGAGAAAAGGTATATTTTCTGTTTCAAGTGCATGGAATTGTATCATT
TTTTGTTCTAACAAAATATTACTAATATTGCAACATGGCCTTCATTTTTT
CTCACTCTTATCTACAAAAGATGTTTCCTTTTGGATCTTGCAGAAATCTT
AAAGCCACCTATAGTTCTACAGGATTTCACTTTACAGttggctctctcta
attcgattcaAAAGACAGAATCGtcttcaaagtaaaaaaaaatcaaattt
cagtacTTTATTCCTTtagtttgaattagagagagtttacTGTGTATATA
GCTATCAAATTATACAATAATCATAACATTTGAGAAGAAAATATTCATTT
AGCTTAGCAccagttttttattttcaatttgccACTAATAACAAAAACCA
GTCTTTCATTACCATTTACGTACATTACACCTTGTATACCATGAATATGA
CTATAAAGCTGACTTTAATATAACCCATTGACCACCCTCCCCACCCATTT
TCCGTGTGACCAACCATTCAACTCCTTCCCACCAACCATACAGGAGCCAC
TTACACTGACCCTGCCCATCCAACGGAGACCACGAAACGCAAACTCCCTC
ACAAGCCCAACGCCACCAGTTACTCCAAGTCTGGACGCCCACCACCCTTC
AATTGACGCTACCAACCTCTCTCTAATGGTGGAAACTCAATTACCAATAA
GTATGGAGTCAACCTCCTCCACTCCTGTTAAAACTAACCCTCTCGGATTG
TTACAGATTGCAAGAAACAACTTTAATAACCATCCAACTGCATCAATCGG
CCATTCCACAGCTGAAGAAAAAATAGGTATGTATTTTATATGATAGATAA
TTTGATAATTTGAAAATCGTGTGGAACTTGGAGTCAAGCTCGGTGGTAAC
TTGGGTCACGGCctattcataatatgcaccattTCAATGTCTTCCACGGG
CCCAACAGCTGATTGTTCGAAATTGACGTAttaactgattttacgtcact
tacaaccaatcagttgttgggtccgtgtcagaagacattgcaatggtgca
tatcgtCACTGTAGAATAAAAAGGAGTTATGTCCATTTTTTGCTGGTTGA
CATAACTCACTCTTTTTTTACATAGTCCATTCAATTATGGACATCTCAAG
AGCCAAAGCAtgttgtaaaaaaataaaaaatttcaaaaattggacATGAC
TCCTTTTTATTCTACAACGATGAATCATGAATATAGCCTAAACCCTGTTT
AGAGAAATTACAAATGCTTGTAATAAACAGGCAGCTGACGACATCTAAAA
TTTGGATGACTTTGGGACAAATGCTGAGTTGGTTTTTCTTGTTTCCATAT
ATCTACTGATCCTAAAAATATTACTCGGCGTCCGAAAATTAATTAACAGA
CACGCCCGATAGTAatctgatgacgtcaccaccaaaagtgaaaatttgat
ttccgCACATAGTAATGATATATACACCATTCGACGCGTTTTTTGATGTA
GATTCCaaatcacatcagtctcaataagtaaaaatttagatttaaaaagt
tatgaCTTAAATTTGACATACGATTTTGGTCAATCATGACCCTTTAACGC
cctgaaaatgtcaaatttcaacgtcatcaaaacgaaaaacaatttatacc
attcgaaagctcgtcaaaaactatatagaagacattCAAACGGGTATATA
CGATTTATCAACCTAACTCGAGGAAATTAAGATCGTAATTCCTCATAAAG
TGaggcatttttttcaaaaatgacgtcatagaagACTTATAGACCTTCAT
AACtcttcatattcaaatttttacttattgagactgatgtgatttaaaat
cttcatcagaAAACGCTTCAAATGGTATatgaaactttgaaattttgcaa
cgtcaatttttttttataaattattctcggacacgtccggtaaagatttt
taaacacgcCGAGTAATTTTTTCTGACTCTATAAACTATAAGGATTTCGA
AATGAGTACTCAATATTTGTCCCTCAATTTTCActtatttcacttttttt
gatgtcattAGCTGCCTGTCAATTATgtactcaaattttctttcatgTAA
CATTGTTTCATCACAGGGTCTTTTACCAATAAGGTATATCTCAAACAAGT
CCCACTAATAAAAGAAGTCTAGACAGTTTGTTAATCATTTTTTTGTGTGT
GGGAAATCTAAATATTGTTTTGTGGTCAATGAAAGAACAATGAAAACCAA
CTATTCCAAAAGGAAGAGTTTTTATTGTGGTTCAGGTTAAAATGATGATC
CTTTTACTACAGAGATATCCTTTTTGGGTAGACTTCATAAGCCCTTTTGT
TTTGTACTATACTGTGTAGAGGGAAAAGGTCAAAGAAAATGACTTTAATT
CTGAGTATACTATGCATTCCTTTGATTCCATTTTCCTCTAGGCAACTTTT
TATCACGACAAGACAGCTATTACGAGACTCCTCTTGCGTCACCCTCTGGT
AAACTTCACCAGAGATGCCTGCAAAGACAATACTATGGCTCACTTAAAAA
GGTTAGTACTTTAGACAGATTAGATTAGTTCGAAATCTTGCTTTACCTTA
CTGCGGTGGTTAACTAATTGATGTCAAAGAAATTCCATGATACTCAAGAA
ACacttcaaaatttcatgcttGATGTTCGAAACGGTTTCGTAATCACGCG
TAGTAACtatttcatttttggacctaccgggaggtcctttaatttgaccg
ttgtccgttcgtctgttacaagcttttctcgggattggctcattagtttt
ttttaattttttgcacaatgatacaaaatggcaatgcctgaaaagtgacg
gagcccgatttttgaaaaaaaattttggggggcaaatttgggcccaaaac
tacctaaaaataaggtttttcggactttgtgcaaaattgcttcattagtt
tttcctgatttttggcagaaagatagagtgcaaggtaccctaaaatgtgg
ctgaagtaattttctTTGTACAATCATTATCGTTATCCAAATGCTgcttt
aggcaaatttgggccaaaaactacctaaaaataaggtttttcggactttg
tgcaaaattgcttcattagtttttcctgatttttggcagaaagatagagt
gcaaggtaccctaaaatgtggctgaagtaattttctTTGTACAATCATTA
TCGTTATCCAAATGCTgctttaggcaaatttgggccaaaaactacctaaa
aataaggtttttcggactttgtgcaaaattgcttcattagtttttcctga
tttttggcagaaagatagagtgcaaggtaccctaaaatgtggctgaagta
attttctTTGTACAATCATTATCGTTATCCAAATGCTgctttaggcaaat
ttgggccaaaaactacctaaaaataaggtttttcggactttgtgcaaaat
tgcttcattagtttttcctgatttttggcagaaagatagagtgcaaggta
ccctaaaatgtggctgaagtaattttctTTGTACAATCATTATCGTTATC
CAAATGCTgctttaggcaaatttgggccaaaaactacctaaaaataaggt
tttttggacttggtgcaaaattgcttcattagtttttcctgatttttgtc
agaaagatagagtgcaaggcaccctaaaatgtggctgaagtaatttttct
cggaaaatttttttccgtcgtcaaatacggattttcgcaaatttgggcca
aaaactacctgaAAATAAGgtctttttttggacttggtgcaaaattgctt
cattagtttttcctgatttttggcagaaagatggagtGCAGGGTACCCTA
AAATTTGGCTTAAGTaatttttctaaggaaaatttttttttgtcataaaa
ttttcaaaaaaagacgaccaagttacacaatgataaaagaaaattattgt
gtttgctcaataccaatagtaaaatATGTAGAATACCTACTTTTATCTGA
TATTGAtcaaggtaggtccattcagcatgttgcttgtttcatTTGATACA
TCCTGACTGACCGGGGACGACGGAAAATCAGCAACTTCTTCGANATTTGA
TATTCAACCTACAATTTCTTTTGACAGCATTGGCTTCAGAAGCACTCATC
TCCACGTCACCAACGGAGAAATATCAAGGGTAGTAGCGAGCAGATTTGTT
TGGCTGCTTTAATTGCCACTCTTGATCCCAAGAGACATGAAGAGAATGCT
CAAACGACCAAACACGTTTTCAAGAAGCCCTCAAgtaagatatttttcaa
aataggttCTCTTATCCTGGAAAATGTTGTCACTTCATTCCTTAAGTATC
TCTCAGTATTATATCCATCATTTCAAATACCTCGCCCTCAAACAGAACAT
CTTCTTATAGGGTCTATTTTTTTGAGGGGCAATCTGCCTCAAAACTCGCT
ATATCgagaactttttctttttactttttcagatTATATCCCTTTGAAGA
AAAGGTATATAAAACGGGCTGCTCAACGGATAGAAGCGCAACAAAATAGA
CTAGTGGATGACTCTTTTAACTCTCATAAAGAATCAAACATAACGAACCT
TTTATCGAACGCCAGCagtttcaaacaatttttaccGAACGGTAAGGGAC
ACACACCTTCAGGGCTACCACCCTCGTCATTGGGGCGTGATTTTAGTAAC
GATAGTAGTAGAGACTTGCAGAGTATACAATCACTATTGTCTGATAAACT
GAGCGATATTTTAACGAGAAAAGACAGTACGTTCAATGGCGTTGCACATG
CGCAGCTCCTCACGCCTCAAAAGTCTCCTAAAGTTACGGAGTCGTCGGCT
CCTCTAGTAAGGACTACAAATTCTTATGGTGAATTTATGAATGGTTATAG
AATCAGTAACGCGGTGTCAGAAAGACTAATGAGCTCAACAAATGCTATTT
TATCAACGACCATTTCTGATCCGAGATTATCTTCGGTCGCCGGTACTAAA
CGCCCCTCAGCCGAAACGGAGGAACCACTGGCAAAGAAAATCAAGTCGGA
CGAAAAGGAGAGTTTAATTTCGGCGCCGCTAACGACGACAACTTTGATGA
CGACGTTAGGGTCCACACCCACGCATCAAGAACTTCACATAAATACAACA
AATAATACACAATTATCCGTAGTAAGTAGGACTCTAACGCCTAATCCGTC
GACTGTGGCAACGTCTTCAGATTTAACGTCCAAAACGCCGGAAACGGACG
AAAGCATGACGCTAAATTCAATGACCTCGTCGCCGGNN

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003021	XLOC_003021	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000052	supercontig	sc0000052:629072..637959 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.07047	0.829967	1.49651	1.26832	8.19143	6.08541	7.18428	5.8913	2.53592	4.11991	3.62075	0.822578	5.84336	5.45902	2.55539	2.73824	4.02484	2.09221	4.31731	4.0395	2.82256	2.41048	0.729756	1.46655	4.60007	4.24561	0.834625	1.59502	2.07375	1.60563

Blast

[Close]

BLAST of TCONS_00005306 vs. Swiss-Prot (Human)
Match: SETD5 (SET domain-containing protein 5 OS=Homo sapiens GN=SETD5 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.696e-25
Identity = 90/306 (29.41%), Postives = 143/306 (46.73%), Query Frame = 3

Query:  696 ATSSIASGNLILEYIGTLMSLKKFEDQNPNFQHNCPFVIKYMKIEPFPIVIDARKNGNDARFLRRSCQANAELRHLTHNGSLHIMVISVVEILQNQEITVPFDPDSDLPGY-IDCAC--GQKTCPMSIATPN-------------------TKKDIIPKKESPISERTEPI-----INTEEVLTKTEMLPDNQQHALQNESESEGG------DDPR---HEKLSREERKLQALMKQFEKLDKKNDTSKHRQHQHHKD-------GKTPHSRTTSISLDDPPTPVTN--------STPQKVGSTTKK 1460
            A   +A   LI+EY G +M  ++FE     F+   PFV+ Y K     + +DAR  GNDARF+RRSC  NAE+RH+  +G +H+ + +V  I ++ E+T+ FD +     Y +DCAC  G + CP+    PN                   T++    +KE  + ++ E         ++EV  K  +  D+++  + N  E          DD     H + +RE+RK++A+M  FE L+K+         Q + D        +TP    T    + P + V+N        STPQ VG  T++
Sbjct:  288 AARDLALDTLIIEYRGKVMLRQQFEVNGHFFKKPYPFVLFYSKFNGVEMCVDARTFGNDARFIRRSCTPNAEVRHMIADGMIHLCIYAVSAITKDAEVTIAFDYEYSNCNYKVDCACHKGNRNCPIQKRNPNATELPLLPPPPSLPTIGAETRRRKARRKELEMEQQNEASEENNDQQSQEVPEKVTVSSDHEE--VDNPEEKPEEEKEEVIDDQENLAHSRRTREDRKVEAIMHAFENLEKRKKRRDQPLEQSNSDVEITTTTSETPVGEETKT--EAPESEVSNSVSNVTIPSTPQSVGVNTRR 589

The following BLAST results are available for this feature:

BLAST of TCONS_00005306 vs. Swiss-Prot (Human)

BLAST of TCONS_00005306 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SETD5	1.696e-25	29.41	SET domain-containing protein 5 OS=Homo sapiens GN...	[more]

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TCONS_00005306 (transcript) - C. hemisphaerica