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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054221 ID=TCONS_00054221|Name=TCONS_00054221|organism=Clytia hemisphaerica|type=transcript|length=1524bpRun BLAST on NCBI transcript from alignment at scaffold_242:558298..576684+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054221 ID=TCONS_00054221|Name=TCONS_00054221|organism=Clytia hemisphaerica|type=transcript|length=18387bp|location=Sequence derived from alignment at scaffold_242:558298..576684+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00054221 vs. Swiss-Prot (Human)
Match: ABD12 (Monoacylglycerol lipase ABHD12 OS=Homo sapiens GN=ABHD12 PE=1 SV=2) HSP 1 Score: 149.443 bits (376), Expect = 1.368e-39 Identity = 96/286 (33.57%), Postives = 139/286 (48.60%), Query Frame = 3
Query: 525 LVNQPFFANLSNCNEFGIVKCENIVLDGGQG-KIGAWMISPST--------------DQYITKEAYILYLHGNMGSRALAHRVEMYKKLSRMGYHILTIDYRGFGDSYGSPTEFGLLEDAKIGYKYLKERAHGHATYIWGHSLGSAVGVQLAAWLNTENSRLNGLILEAPFNNMFDGIKHSHLAAPVIPFIPNFDSYIEDVKEV----FKSDYWIKKVFSSTLILHDVSDHILNIKLARKLYFSAKETGSSN---VHMIELNEKL--YHNDIYKAKHFIKYIEEFM 1310
V P+F +L + G+ N L + IG W P+ D + ILYLHGN G+R HRVE+YK LS +GYH++T DYRG+GDS G+P+E G+ DA + ++K R+ + YIWGHSLG+ V L L + + LILE+PF N+ + K SH + + + P FD + D F +D +K + LILH D ++ +L RKLY A S V + + L H IYK+ + + EF+
Sbjct: 105 FVRVPYFIDLKKPQDQGLNHTCNYYLQPEEDVTIGVWHTVPAVWWKNAQGKDQMWYEDALASSHPIILYLHGNAGTRGGDHRVELYKVLSSLGYHVVTFDYRGWGDSVGTPSERGMTYDALHVFDWIKARSGDNPVYIWGHSLGTGVATNLVRRLCERETPPDALILESPFTNIREEAK-SHPFSVIYRYFPGFDWFFLDPITSSGIKFANDENVKHISCPLLILHAEDDPVVPFQLGRKLYSIAAPARSFRDFKVQFVPFHSDLGYRHKYIYKSPELPRILREFL 389 The following BLAST results are available for this feature:
BLAST of TCONS_00054221 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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