TCONS_00054212 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054212
Unique NameTCONS_00054212
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1666

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054212 ID=TCONS_00054212|Name=TCONS_00054212|organism=Clytia hemisphaerica|type=transcript|length=1666bp
ATCGAGCGTAAGTTTGATAAGGTGTGCAAAAATATCGTACTGGAAGGTGG
TCGTCCCGTTCGATGGACGCATCAAAATGGACAGGCTTTTTCTGCTGACA
AGAATCTGGAAAGCCTTTTTGTAAACAGAAATTTGAGCTTAGGTTATGTG
CTGTATAAAATGTCATTTGAAACATGATCTGGCCAAGAAATAATCAATGC
TGAGCAAAGTAATCTACTGTATGAAATATGAATGAACAGAAGGAGCAAGA
TCTGGTAAAAAATGAAGACACAAAAAAGAAGACTGAATTTCATTGCACTA
TTTGTGACAAATATTATGCTTCATACAAGAGTTTTGGAAATCATACCAGA
TCTTATCACAGTGTGAATAAACAAAAAGCACAATGTACATTCTGTGGAAA
TTGTTTCACACGAAAAGACAATTTACAGCAACATATCAGACTTTTCCACA
GTGAAATGCAAACTACATTTGCGTGCAAATTTTGTGGCGAGTCATACTCC
AGTCGAAATATGCTATCAAAGCATAAACAAGACTGTGTCAAAAAACTAAA
TTCAACATATGATGAATCATacaataagaaaaataatgagCCAAAGACTA
TAATTCTTTTCACTCCTACTCCTAAAGGTGCTATACCAGTTTCCCTTCAA
CCACCTCAAGAGTACAAAACTGTAAAAGTTGAAAACACAACAATCCTGGA
ACCACCCAAAAAACGAAGGAGAAAACGTGAATATAACATTACTAGACCCA
AAGATTATGATGAAAACAATAATTCTAATAACACTGTTGGATATTACACA
CACCCTGTAACAAAAGTAGAAGAAAATAATAACTCTATTGAAATAATGGA
ATTTCCTAAAGAAGAACCTCCAGAAAGCAAGGCCTTGGATTGTACTGTTT
GTAACATTACGTTTCTAAGTGAAAAAGACTATTTGTCTCATAAACCATTT
TGTGATGATGGTCAGTTCTGAACTGAAGATTGAATTTTCATAGTGAAAGA
TTATATATTTTATACCTATTTTTGTATGTATTATTTTTAAACCTCAAATT
ATTTACAACTttccttatttttaccattattAAAACTTCCCAATATAGCT
CAAAATAGGGCTGAACTTAATGTTGATTTACCTTCACCTGATTTTTGAGG
TGGGTTGGTTTGAAAAAagatcttctttaaaatggtgATAAAATTTTCTG
GATTGGCAGGTTTTAAGGTAAGGTCTGTCGGGTATTAATTacagattttt
aaaagttttatctcAGCAACAATATTTAACTGTCAAGTGAAAGCATGCCT
TTTACTAAGTTATTGATAGTTTAGTTTAAATCAAAAGACACAATGTTTTC
CAAGTTCTTCTTAACAGCTTGAATTATATACTCATGTAGATGTAGGATTT
TCATCAAACATGCTTTTGATGAGCATTTCCAATAGTGCTAGCTGTTACAT
TCTAAACTTGTTAAATAATAATTTAGCTTTTCTTGCTATGAAACTCTTCA
GCTTGTAAGTATTTTTACGAAGTTTTACATATCGGTATATTTTTGGCTAT
AATTCTTTGTATTCTTTTTTTAAGATGGATTCTATTTTTTGTAACATATT
TTGCTATCATCATTAAAAATCATTataatcaaaatatattttatatacAA
TTTTTATAGAGATTAG
Run BLAST on NCBI

transcript from alignment at scaffold_242:507254..512292+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054212 ID=TCONS_00054212|Name=TCONS_00054212|organism=Clytia hemisphaerica|type=transcript|length=5039bp|location=Sequence derived from alignment at scaffold_242:507254..512292+ (Clytia hemisphaerica)
ATCGAGCGTAAGTTTGATAAGGTGTGCAAAAATATCGTACTGGAAGGTGG TCGTCCCGTTCGATGGACGCATCAAAATGGACAGGCTTTTTCTGCTGACA AGAATCTGGAAAGCCTTTTTGTAAACAGAAATTTGAGGTATTACGTAGTA ACCTTTCAGGTGTTTTTCTGCTAATTTGATACACAAGCTACACTGGTAAA ACCAACAGCAGCTAGCTAAGGACCCACATGACACGGTATAGGCCAATCAT TTTCAGGCCATTCAGCCATTTTGAACTTGGAAAAGTCCTAAACATAACCC GAACTGGCCCGTGGCGCGGGGAAGGATGTGCCGCTGGTCCATGCTGGTTA GAGAGGTTTGTTCCAGCAGGTAGGTTTgcagcaaaaaaatgcaaaaatag aaaattcagtcCTTCTTACGTTCTTAGCTTAGGGTGCCTTAGGCCATGCA TGGCCAGTGCCACCAAAACGTTTTacttttattcaaaatgtccGTGACCA AGCTTTTAGACTTGAGTTcggtcaatttgagggtgctgattcggaattta aatgttaccaagcttgaatgaaaacccgcagtttttgcgtaacTTGCGAT CTGTTGCGATTTTAGGCAAAATATTGTAAGGcgatcatcgaaaaaatgct ctgttcgcgtcacaacgggtgttaaaaatgcatgcgggcggacgggcgaT AAAAAACATTCCcggtttttttaatcacgccagtaactcaggggcaGGTG TTACAGTAatgcgagcaaaacaatttttcgatggtcgtcagagcaattga gaaaaaagctaactttaaaagaaaaaattgcttttcccggaaaattagcg gaaaatttgatgcgggcgggtgacgcgaatatagaacaatttttcaatga ccgtctaagccctgaaaattcatgattttttgggggtcttcaaaatcaaa atcaaaaaagacttataaccacgtgatagagctcttcaaactgagcaaaa aatgtataatatcaaagtctcaacttttctagataaaaaattccctgttt tcaatcaatttttgaccataaaatctatggtcaaaaattgattgaaaatt ttatgcaaaattatataaatatataaaaaagttggtcccagacattttga attttttctttatttttgaaacattaacAATCCACTGGCCACGGCCTACC TTCATTGtggaaatttgggaaaaaagaggtaaattttggggaaaattttt gaaatttagtccCATCTGCATAGGTAAAAATCTTGAAGCTTCCTCTTCAT TATGGATATATTGGCACTGTTGTATAGCGGTCATTGTGATCTTGGTTGCT GCACGGGCGACTGGAGCTGGAGGTTTGATTCctactcgcagcggttcact tgggttggcaagtgaatgaacttttgcctgggtcaacccatgccatgtga ggggaattgggtagtcagtccaaggtgctgacgaggcgctcattgaaagc gtctatagttccgaaaataggcctcaaagcctcctgcaactcaaccaaat agaaatagaaatggcAAAACACAATGATCTGCAAGACACATTAAACTTTC TCTTATTTTTGATGACAGCTTAGGTTATGTGCTGTATAAAATGTCATTTG AAACATGATCTGGCCAAGAAATAATCAATGCTGAGCAAAGTAATCTACTG TGTAAGTTCCTTTTCATCATTTTCTCTGTGGATTTTGTAAGAGTCCACAC TGTAAAGAAAGTATACTTTCTAATGTACAGTAGCAGTAAATATTCTAATT TTAAGGTTACAGGACAAATTTGATTTCCATTTGCATATCTTAGATAGTTT ATTACAGGCCGTGCAAGCCTGAGCTTTTTGCCATTTGTCCTTTTCAGAGT CATCGGGATAAGTACCCAAGTATTTGAAATCATTTACAACTTTAATTTTC TCCCCTGATGAGAAAAAATATCTGTGGTTGGCTGAAATTGAGCACTTCAG TTTTTTTGGTATTTAAGGGCCCCCCCTTAGCGGTCGTGAATGGGGCTTAA TTTAACTTTgtgaatgaatgaaaatttttttaaaaattgcatgAATGCAT GAATTGGAAACctttgcgtgaacaaaaattacgtgaattgcaaaaaaaac attGCGTAAATGCTTGAATTTGGGAAANNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgctgggggggggggg gcttcttTAAGTGGAGAGCAACTTTGGATGCGTTAGCTTCTGTGTTGAAT TAGAAGTTAATCAATCAAGTTTGAGGTAAGAGCAATGTCATCTGTAAAGT CAAGATCAGTCTAGATCAGTAACTTTAACTTCGGGTATTCATCAACCGTA AGACTATTGCTGTTTTTTTACATTACTTGTCTCCTTATATAAtcaaaatc attacaaaatgagcaaaaaaactGCCTCGTATTGCTTGAGATGTAGCCAA AATTCCCTAAGCATTTCCTAATCAGGCAATAAAAGAAAGCCTGGAAAATT CCTAAATAGGAAATTAAGATCTATAGAAAATTTAGGAAAGTTTTACTGAC TGGTTGCACAAGCATATTTTGGTGCTCTCCACCATTTGGTCtctgggagg taaacaaacctgtttttgcctgcatttccttagggaaagttgtgtttttt ttagcttttcttaagtCATCGAACAGAATCCCTTTTATATATATTCTATC TATATTTATGATATTATTATATACCGTGACTTTGTGTATTCCTTGTCTAA TTTCGTCATAACAACTATTTGTTCTGCAAAGTAGTAagagtgattttttc aaaaacattaaaagataGTATCAccctgaaaaaaatattggtatATATTA AGTCTAAGAGTTAAATAAGAAAGCTGAAAACCcacactttccctaacccc ttgcaggcaaaaacgtgtttttttactcactcattttttggaaaaacttt cCCGAATTCAGAAAATCAGAATTCGGGCTagaagattttttgtttaatgc tttaaaaaatttctgttaatttttttttgtggtATTAAATGTATTCATTA CAAAGAAAGTTCTTGCACTCCACCAAACATCCTAAATAGCTGTTTGAAAT TAGCCTAAAACTCAAACTTGattatcaaaaaaacttttgaaattttcaca ttttttcgtCACCAATTTGAGAATTGAGAAAGAACAATCACCAAGAACGG TGGTAAAACAGTATATTCTTGAAGAATACCCTGTTTGGGTTAAAGAAAAA CTTCAGGTGGGGTTGGGGTGGGGTCAGATCAGACTGGTTGATTTTCACTT TTCTGTCTTTTTCAATCTTCTTTAATCTTTTTTACACTGTAGAAGAAAAA TCTAAAAGGTAACGTGGAGAAATTAGTTGAGTGAAATTTATAATCTTTAT TGTTTTGTGtatatatgttttattttgattcaatCAATTTTAGATGAAAT ATGAATGAACAGAAGGAGCAAGATCTGGTAAAAAATGAAGACACAAAAAA GAAGACTGAATTTCATTGCACTATTTGTGACAAATATTATGCTTCATACA AGAGTTTTGGAAATCATACCAGATCTTATCACAGTGTGAATAAACAAAAA GCACAATGTACATTCTGTGGAAATTGTTTCACACGAAAAGACAATTTACA GCAACATATCAGACTTTTCCACAGTGAAATGCAAACTACATTTGCGTGCA AATTTTGTGGCGAGTCATACTCCAGTCGAAATATGCTATCAAAGCATAAA CAAGACTGTGTCAAAAAACTAAATTCAACATATGATGAATCATacaataa gaaaaataatgagCCAAAGACTATAATTCTTTTCACTCCTACTCCTAAAG GTGCTATACCAGTTTCCCTTCAACCACCTCAAGAGTACAAAACTGTAAAA GTTGAAAACACAACAATCCTGGAACCACCCAAAAAACGAAGGAGAAAACG TGAATATAACATTACTAGACCCAAAGATTATGATGAAAACAATAATTCTA ATAACACTGTTGGATATTACACACACCCTGTAACAAAAGTAGAAGAAAAT AATAACTCTATTGAAATAATGGAATTTCCTAAAGAAGAACCTCCAGAAAG CAAGGCCTTGGATTGTACTGTTTGTAACATTACGTTTCTAAGTGAAAAAG ACTATTTGTCTCATAAACCATTTTGTGATGATGGTCAGTTCTGAACTGAA GATTGAATTTTCATAGTGAAAGATTATATATTTTATACCTATTTTTGTAT GTATTATTTTTAAACCTCAAATTATTTACAACTttccttatttttaccat tattAAAACTTCCCAATATAGCTCAAAATAGGGCTGAACTTAATGTTGAT TTACCTTCACCTGATTTTTGAGGTGGGTTGGTTTGAAAAAagatcttctt taaaatggtgATAAAATTTTCTGGATTGGCAGGTTTTAAGGTAAGGTCTG TCGGGTATTAATTacagatttttaaaagttttatctcAGCAACAATATTT AACTGTCAAGTGAAAGCATGCCTTTTACTAAGTTATTGATAGTTTAGTTT AAATCAAAAGACACAATGTTTTCCAAGTTCTTCTTAACAGCTTGAATTAT ATACTCATGTAGATGTAGGATTTTCATCAAACATGCTTTTGATGAGCATT TCCAATAGTGCTAGCTGTTACATTCTAAACTTGTTAAATAATAATTTAGC TTTTCTTGCTATGAAACTCTTCAGCTTGTAAGTATTTTTACGAAGTTTTA CATATCGGTATATTTTTGGCTATAATTCTTTGTATTCTTTTTTTAAGATG GATTCTATTTTTTGTAACATATTTTGCTATCATCATTAAAAATCATTata atcaaaatatattttatatacAATTTTTATAGAGATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034195XLOC_034195Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054212-exon-scaffold_242-1491911889:507254..507390TCONS_00054212-exon-scaffold_242-1491911889:507254..507390Clytia hemisphaericaexon
TCONS_00054212-exon-scaffold_242-1510915933:507254..507390TCONS_00054212-exon-scaffold_242-1510915933:507254..507390Clytia hemisphaericaexon
TCONS_00054212-exon-scaffold_242-1575043694:507254..507390TCONS_00054212-exon-scaffold_242-1575043694:507254..507390Clytia hemisphaericaexon
TCONS_00054212-exon-scaffold_242-1491911889:508872..508954TCONS_00054212-exon-scaffold_242-1491911889:508872..508954Clytia hemisphaericaexon
TCONS_00054212-exon-scaffold_242-1510915933:508872..508954TCONS_00054212-exon-scaffold_242-1510915933:508872..508954Clytia hemisphaericaexon
TCONS_00054212-exon-scaffold_242-1575043694:508872..508954TCONS_00054212-exon-scaffold_242-1575043694:508872..508954Clytia hemisphaericaexon
TCONS_00054212-exon-scaffold_242-1491911889:510847..512292TCONS_00054212-exon-scaffold_242-1491911889:510847..512292Clytia hemisphaericaexon
TCONS_00054212-exon-scaffold_242-1510915933:510847..512292TCONS_00054212-exon-scaffold_242-1510915933:510847..512292Clytia hemisphaericaexon
TCONS_00054212-exon-scaffold_242-1575043694:510847..512292TCONS_00054212-exon-scaffold_242-1575043694:510847..512292Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:507254..512292 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.67186 5.34399 0.608146 0.504543 12.4625 7.31884 9.13383 7.9872 2.30541 2.86156 2.74847 1.5145 2.40787 1.2603 2.68871 2.44345 5.87911 4.4159 1.21195 2.08721 7.96652 9.0131 22.1174 22.2852 2.96494 4.13254 5.23216 3.63665 9.74858 11.4727
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054212 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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