TCONS_00054450 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054450
Unique NameTCONS_00054450
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length299

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054450 ID=TCONS_00054450|Name=TCONS_00054450|organism=Clytia hemisphaerica|type=transcript|length=299bp
GAAAAACAATTGAGCGGGTGTGTCATCAAAAATAAGGAGCATCCATCATC
AGCGTCACAGGGTCCCGGTAAAAAACCAAGAGCTTGATCATAAACGTTTT
CCCTACCAGTTGTGGATAACTTCACAATAGTCTATCATCGTGTCAGGTTC
CAAACTTTATCTTTCctttttataacattctgtCTGGTATCATATATCAT
TTAACATTTTATTAAActctttttgaagaatttatAGTTTATTATAACCA
TTTAGGTAGcgtttttaaatttatatatattttttatctgTATATTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_242:387011..387309

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054450 ID=TCONS_00054450|Name=TCONS_00054450|organism=Clytia hemisphaerica|type=transcript|length=299bp|location=Sequence derived from alignment at scaffold_242:387011..387309 (Clytia hemisphaerica)
AAAAATATAcagataaaaaatatatataaatttaaaaacgCTACCTAAAT
GGTTATAATAAACTataaattcttcaaaaagagTTTAATAAAATGTTAAA
TGATATATGATACCAGacagaatgttataaaaagGAAAGATAAAGTTTGG
AACCTGACACGATGATAGACTATTGTGAAGTTATCCACAACTGGTAGGGA
AAACGTTTATGATCAAGCTCTTGGTTTTTTACCGGGACCCTGTGACGCTG
ATGATGGATGCTCCTTATTTTTGATGACACACCCGCTCAATTGTTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034314XLOC_034314Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054450-exon-scaffold_242-1491911889:387011..387309TCONS_00054450-exon-scaffold_242-1491911889:387011..387309Clytia hemisphaericaexon
TCONS_00054450-exon-scaffold_242-1510915933:387011..387309TCONS_00054450-exon-scaffold_242-1510915933:387011..387309Clytia hemisphaericaexon
TCONS_00054450-exon-scaffold_242-1575043694:387011..387309TCONS_00054450-exon-scaffold_242-1575043694:387011..387309Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:387011..387309 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.445637	1.74395	3.18463	5.03308	6.07219	4.26353	4.64334	2.46494	0	2.35913	2.87937	1.08737	0.446982	0.47968	1.47732	1.5142	2.09195	1.31344	2.66378	1.11369	1.35383	0.410276	1.26773	1.88569	8.63494	5.18368	0.436849	0.44508
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054450 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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