TCONS_00054448 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054448
Unique NameTCONS_00054448
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length772

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054448 ID=TCONS_00054448|Name=TCONS_00054448|organism=Clytia hemisphaerica|type=transcript|length=772bp
CCTGACCCTAACTGGTAGTGACCCAATAAGCGACAAATACGTCATTAAAG
AACGTCACAATACGTCACTAAAGAACGTCACATTTTCGTCTAATCAAaaa
aatggattagaccctccACAACCCCGACGGAAAAAGTGAGTCCACCCCTC
CCGGATTATTTGACTTGGTTCTAGCCATTAAATATCCACTACCGGTTGAA
AATTACGCATGCGCAgtattatgaaataaaattgcgAGAAAGGTCCTTAC
TCCCTGTGCTAGAAAGGGGGGATAGCATATTTCAATGTCATCATGGATAA
tcatgcaaaaatagaggaacagaaatctgtggttggatttagttggaaag
tatacAAAACATACACAAGTTtacaaaaagatttgaaagccAGTAAAGCA
TCTCATCAAGAAATATTATACTTATTAGAACATTAAATGATAGATTCTCa
tgattaaaaaagaaacaCTACATTATCTAATTCGGACACCCTGCGAAAGT
TTCAATCAGGGATTCTGACCTTCTAACGTAATAACATGAAATTCTGTGTC
ATTTACTATATGATTTGAGGCAATTGAAGCCAAACTGAGGCCACAGGACG
CCTTCGAATGTCaaacttttgatgaattttagaAAGTCAAAATTTCTGAT
TTACCACCATTACCCTTACCTACCACTTCACTTACCATCCTTACCACCAT
TTTGGCCTGAAATTTTTGTTGCCCTTTATTAATAAGCCTCCTAAATATTG
ATTTAATGcatcttaaaaaagc
Run BLAST on NCBI

transcript from alignment at scaffold_242:184102..184873

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054448 ID=TCONS_00054448|Name=TCONS_00054448|organism=Clytia hemisphaerica|type=transcript|length=772bp|location=Sequence derived from alignment at scaffold_242:184102..184873 (Clytia hemisphaerica)
gcttttttaagatgCATTAAATCAATATTTAGGAGGCTTATTAATAAAGG
GCAACAAAAATTTCAGGCCAAAATGGTGGTAAGGATGGTAAGTGAAGTGG
TAGGTAAGGGTAATGGTGGTAAATCAGAAATTTTGACTTtctaaaattca
tcaaaagtttGACATTCGAAGGCGTCCTGTGGCCTCAGTTTGGCTTCAAT
TGCCTCAAATCATATAGTAAATGACACAGAATTTCATGTTATTACGTTAG
AAGGTCAGAATCCCTGATTGAAACTTTCGCAGGGTGTCCGAATTAGATAA
TGTAGtgtttcttttttaatcatGAGAATCTATCATTTAATGTTCTAATA
AGTATAATATTTCTTGATGAGATGCTTTACTggctttcaaatctttttgt
aAACTTGTGTATGTTTTgtatactttccaactaaatccaaccacagattt
ctgttcctctatttttgcatgaTTATCCATGATGACATTGAAATATGCTA
TCCCCCCTTTCTAGCACAGGGAGTAAGGACCTTTCTcgcaattttatttc
ataatacTGCGCATGCGTAATTTTCAACCGGTAGTGGATATTTAATGGCT
AGAACCAAGTCAAATAATCCGGGAGGGGTGGACTCACTTTTTCCGTCGGG
GTTGTggagggtctaatccatttttTTGATTAGACGAAAATGTGACGTTC
TTTAGTGACGTATTGTGACGTTCTTTAATGACGTATTTGTCGCTTATTGG
GTCACTACCAGTTAGGGTCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034312XLOC_034312Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054448-exon-scaffold_242-1491911889:184102..184873TCONS_00054448-exon-scaffold_242-1491911889:184102..184873Clytia hemisphaericaexon
TCONS_00054448-exon-scaffold_242-1510915933:184102..184873TCONS_00054448-exon-scaffold_242-1510915933:184102..184873Clytia hemisphaericaexon
TCONS_00054448-exon-scaffold_242-1575043694:184102..184873TCONS_00054448-exon-scaffold_242-1575043694:184102..184873Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:184102..184873 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.252062	0.43015	0.296067	0.252674	1.61462	1.186	1.4583	1.24783	0.580095	0.639469	0.0898593	0.725621	0.744479	0.739901	1.16089	0.661382	0.648097	0.622742	1.80693	1.71875	1.73334	1.65177	0.361262	0.666394	1.21783	0.800094	0.354673	0.710744	1.08363	0.950898
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054448 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top