TCONS_00054312 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054312
Unique NameTCONS_00054312
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1149

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054312 ID=TCONS_00054312|Name=TCONS_00054312|organism=Clytia hemisphaerica|type=transcript|length=1149bp
CGTGAGGTATATAATTAATCTAGTCTATCTTAGTTATATCTAAGGGAAac
actcaaacataaaatcccaaacaacaccccgggaaaggtgtattagaatG
ATTTTACACGCGAGTGCATTCCTTTATATACGAAAAAACAGCCAATGAGG
TAGCCGACTGCTGATTATGGGTGGTTATGGGTGATTATGGATGATTATGG
CTGTATCCGCGGATTAGAAACACCGATGTAAAAGAAATGAAATGGCTACA
AATAAAGTAGATCTGAAGAGAGATTCATTGAAATTTCTCTATGAGACCCC
TTCAAAGACAGAAGTTAAGACTAATGCCCAATTATTGGAAGAATATCTAA
AAGAAAATGCAATAAACAGTAACCACTCtgatattgaaaaattgaaagaa
agattGCGGTTCAAACCCTTGCTGTTAGAGAAATCACTTGTTGGTAATAA
GGATAAAAAGAAAAGgatagaaaaaaggaaaaacaccaAACTTGGCAGAG
TggcaattaaaaaattgaatctctacaaaatatcaaaagatgaaCAAAAG
TATGATAGTTTTTTACCTCTACACAATCTTTGGAAAAACTATGTacgaaa
tttatttttgcataaaaacGGAAAAGTGATGATAAGAGCTGAAGAAAGAG
TCCTGAAAATAGACTATCATGGTGCTAAAATTGAGGTGAAGAAATGTAAA
TGTGAGTCATTTGTTGGAATCTCTGGAATCATTGTCAAAGAGacaaaaaa
tatgtttgaaattatAACACAACAGAACGAACTTAAAGCCTTACCAAAGA
GGGAGACGTTGTTTGAATTTCTTATTCATGGACATAAAATCAGCATATAT
GGAAATGCTATTGTTGGACGACCTGGCGAGAGGATGGTCAAACGATTTAA
GAATACTTATGAATCAGATATGATTTTAGATAATttgtaataatttttta
tttttaacttatttattatttgaagatattttgaatTGGAATTCctttct
tgttttatttttgctcTTGATCAATGAAAGCTTTTGTTGGAATTGTCACC
ATTTTATTCTTTAAaggtttaaccctattcatactaggcttttaggggca
gTTCATACTAGGGGGCTGTTCCTGTACCACTCATTAACTTTTGATTTAG
Run BLAST on NCBI

protein sequence of TCONS_00054312-protein

>TCONS_00054312-protein ID=TCONS_00054312-protein|Name=TCONS_00054312-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
MATNKVDLKRDSLKFLYETPSKTEVKTNAQLLEEYLKENAINSNHSDIEK
LKERLRFKPLLLEKSLVGNKDKKKRIEKRKNTKLGRVAIKKLNLYKISKD
EQKYDSFLPLHNLWKNYVRNLFLHKNGKVMIRAEERVLKIDYHGAKIEVK
KCKCESFVGISGIIVKETKNMFEIITQQNELKALPKRETLFEFLIHGHKI
SIYGNAIVGRPGERMVKRFKNTYESDMILDNL
Run BLAST on NCBI

transcript from alignment at scaffold_242:60792..66831-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054312 ID=TCONS_00054312|Name=TCONS_00054312|organism=Clytia hemisphaerica|type=transcript|length=6040bp|location=Sequence derived from alignment at scaffold_242:60792..66831- (Clytia hemisphaerica)
CGTGAGGTATATAATTAATCTAGTCTATCTTAGTTATATCTAAGGGAAAC
ACTCAAACATAAAATCCCAAACAACACCCCGGGAAAGGTGTATTAGAATG
ATTTTACACGCGAGTGCATTCCTTTATATACGAAAAAACAGCCAATGAGG
TAGCCGACTGCTGATTATGGGTGGTTATGGGTGATTATGGATGATTATGG
CTGTATCCGCGGATTAGAAACACCGATGTAAAAGGTACAGCGAGATCAGG
TAACTTGCATCAGTGGAGGCTAACATGCATAGCCCTCAAATAAATGACCT
GGCTGGTCATTAAAATACAAAGTTAAATCAAAACAAAAATGGTAGAGTAG
AGCTGCGAGGGGAGCTGTAGGGTTCTCAAGGGGATTAAGGCAGGGTCAAA
ATGCTTGCAACGTTACAAATCATTCTCAGAAGCTCGTTTTGGGCTCAAAC
GAAGCGTATAACTAATTAGAATAAGATTCAGTCTAGGCAGATGTTTTTTC
ATTTTGAAATTTTGCGTAATTCGCAAAAATCCTCAACTTTGCGCTATTTT
GATGACGTCATAAAAATTGAAATTATAATAACTTTTGATAGAATCATCAA
AATAATTTCAAACTTTCACCAAAGGTGCATTTCATTGCAAATTTTCAAAA
AATTTCAAAAAATTTTCAAAATCTTGATGACGTCAGCATTTTTTAAGGAT
TTTAGTTTTTTGCCTGAAAAATGATGACGTCATCAATTTTCATTAAATTT
TTTTTTTAATTTTGAAAACATTAATAATATGCATCTTTGGTCAAAATTTG
AAATTATTTTGATAATTGTATCAAAAGTTATTGGGATTTCAATTTTTATG
ACGTCATCAAAATTTTGAAAACATTAATAATATGCATCTTTGGTCAAAAT
TTGAAATTATTTTGATAATTGTATCAAAAGTTATTGGGATTTCAATTTTT
ATGACGTCATCAAAATAGCGCAAAATTGAGGATTTTTGCGAATTACGCAA
AATTTCAAAATGAAAAAACATCTGCCTAGACTGAATCTCATTCTACTTAG
TCATACGCTTCGTTTGAGCCCAAAATGAGCTTCTGAAAATGATTTGTAAC
GTTGCAAGCATTTTGACCCTGCCTTAATCCCCTTGAGTTAGTTGTATTTT
AATGACCAGCCAGGTCATTCAGTCATTCATTTGAGGGCTATGCATGTTAG
CTTCCACTGATGCAAGTTACCCGATCTCACTGTATAGACCTGACAGTCTA
AGCCTAGGCAAAACCTGGAAATAAGGCTGTTGCATTTTATTTATGAAGTA
AAACATCATCTCCCTCTCTATACCTAAACTTTTTCCTTATAATGGGATAT
TCAATTTTGACCTACCATGTCCCACATACTGACAAACTCTAGCTACAGCC
TTGGTTAAGCTAATCAGATTGATTGAAACTTTTCCTCAAATGGTTTGAAT
TTGTCATCTTGAATACACTGTTGTAATGTAATGTAAAATTTAATAAAATT
TATTTGGTCAAGAAGGTCTAAAATTTAGGCATTGCTACAAGCATTGATGT
GGACCTACTATATAAAATAATTTAAAAAATAATAGGATAATAAAATATAA
ATAACTATTTCGACTATTAACAAATAAATACCGGGTGCGCCACAAAAAAG
TTTCTCTCTTTAAAACTGGTTTTTTCGAAATCTAAGAATTAAGAAATAAC
CATTCCTGTTCCATCAGAAAGAAGAAAGATAAACTTAAATTTTGATGGGT
CATTTAATAAATTTGATTCATTAGATCAAAAATTATACTCAATCGAATAA
AAAAGTCACTTTCAGAAAGTGCCCGAAACGTGGGNAAAAGTCACTTTCAG
AAAGTGCCCGAAACGTTAAAAATCGACCTATCAAATTTTTATTTTAAAAT
TGGTAATCGCAAGAGGCTTTAAATGCTTAAGACCATTTTTCAGTAATTAA
ACACATAAATTTTGAAACTGATGGAACGAAAGGGTTTAAAATGTTCATCA
AAATCATTTCAGTTTACTTTTAAGGAAATTTTCCTCAGATTTTTGGTTCT
AGACTGGATAAAGTATATGTAAGGCTGGATGTACCTCGAAACCCATATTT
GATGTATTTTTATGAATTTTACCAGATTTTTGGCTTTTTTCGACGAATTG
TCTGCCTTTTATTGAAATTCAATCTTCCTTTATATAACAAACGGTCATTT
AGACAGCTAAGTATCATTTGACTGAAATGACTGAAACGAAAATACTGATG
CATTATGTTATGTTATTCACCAGGGGGGGGGTCTTGCAATTACTCCTTGA
CACTATGTGGAGTAACTGCAATTTTGGACATTTTCTACAGACACCACCAC
CCTTGCAGTTATTCCATAGTGTACTAACTGATTTTACCCTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTTAGTCCACTGGTGGAGTAACTGTTTTCCCAAATTTTGGTTTA
TATACCACCACGGTAGTAATTGTCATAGTGTTTATATAATAACTGCATGA
CCCCCCCTGTATTCACAGGAAAAAATCCGTAAATCACATGCGTGTGAAAA
TGTAATTCACAATCCATCTTTTCTCACTTGTTAAATAGAATAGAAGTGAG
TTACTTTAGGGTATTAAACCTCTCTCTCTAAGAAAGACAAACAATCCTAT
TTGTGATTTTAGATCTAGTCAGACACTCCATTTAAGTTGAGAAAAGATGG
CTTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATGGCTTGTG
AATTGCATTTTCACACGCATGTGATTTTTTGCAGGATCACATGCTCGGAA
ATCAGTTTTACCAAGCATGTGATTTCCATACTTTTTCCTGTGATTATTTT
TCTGTTTAATTTGATAGGTCGATTTTTAACGTTTTTGAGCACTTTCAGAT
AGTAACTTTTTTATTCAATAGAGCATAACTCTCGATCTAATGAACCGAAT
TTCATAAACGACCCATCAAAATTTAAGTTTATCTTTCTTCTTTCCAATGG
AATAGGAATGGTTCTTTTAAAAATTTTAGATTTCGGGAAAATAAGTTTTA
AAGAGAGAAACTTTTTTGTGGCGCACCCGGTATATTCTTAAAGTTAAATG
GGCTAAAATAAATGACTTAAAAAACAGAGACTTCAGAGATTATCAGAGAT
TATTGCAAAAGTAATTGAATTTAGAGAATAAGGCTTGCAAAAACAAAAAG
AAATTGCTGGAAATTGTGTGTTGTGTTATAGTTTAGCTGAGCGAAAAAAA
TGGATAATACTGTGAGAAATTAATAGAACATAAATATTAAAATACATATA
TTGAAATGCTTTTGCTAGGAAATAGGTTAATTAAAATTAAATAGAAAATA
TAGGTAGATGGGATTCTGGCTTAAATTCTAGTTACTTGGGTATTATAGTT
AGATGAGTTGAGTGAAGTAAGAGCTTGGAGCTTAGAGCGAAAAAGAGGTC
CTAGGTGTGAAGTTAATCAAGAGGGGGATATCCTAAGTATGATGATAATC
AATAATAAATAAAATCTAGGTCACGTGCATCTCCAACGGTGCCAAATTTT
ATGCGATCTAAAATATCCGATTTTTTAAGAGCATCTTTAAATGAGTCATA
TGAATCACATGCTTTAAGTTTTGGTGTCAGATTGTTCAAAATTGACACAA
CTCGAACACGAAATGATCTCTTATAATCAACATATTTTGATGGTGGTACG
TGAAGACGCCAGTCATTTCGATTCTTCTTTTTTTAGTCACATCTGTCAAT
CAAGTTAAGAAGCAGTGGTGAATACTGTGCTTTATATATAAAGTTTAGTA
GTGTCGACTGCGCACGCATCCAAACAATTTTCCATAGTTTTGATTTTAGC
GATCGCTCTCTCTCGTAAAAAAAAGGTAGGTAAAATTCCAGTTCTTGTAA
GGAAACCTAGCAGTAGGTAAAGAACTCCTTTTAATCATAACTTCTTTTCC
TCTTGATGCAATTTTTGTGAAATTTTCAGGAGAGATCCATAAAATTATCA
TTGATATCATTTTCAAATATCTAAATCATTCTCTTTAAAGAAAAGGAAAC
AAAATGAAATGTTTACATTCCTCTAACCTTCCACAGTACTAAAGTGCATA
TTTTTAACCTACCGTTTTTACAGTGGAACACGGTGGAGATAGCGAGACTC
CTAAATGGTGTATTAATCTATTGATCTCTCTTATAACCAATGTCCAAAAA
TGTCATAAATAACATAAATAACATGCCAATAACTGGGAAGCCTTGGGCGT
GGATAGATTTCATAAATTGCTGTTAATGAAATCAATTTTTTGTCTTTTTT
GAAAAACTATAGAAGAACTGATTTGGTAGAATTTTTATTTAACCATTGAT
TAATGCTGACTAATATTCTGTTTAGAAATGAAATGGCTACAAATAAAGTA
GATCTGAAGAGAGATTCATTGAAATTTCTCTATGAGACCCCTTCAAAGAC
AGAAGTTAAGACTAATGCCCAATTATTGGAAGAATATCTAAAAGAAAATG
CAATAAACAGTAACCACTCTGATATTGAAAAATTGAAAGAAAGATTGCGG
TTCAAACCCTTGCTGTTAGAGAAATCACTTGTTGGTAATAAGGATAAAAA
GAAAAGGATAGAAAAAAGGAAAAACACCAAACTTGGCAGAGTGGCAATTA
AAAAATTGAATCTCTACAAAATATCAAAAGATGAACAAAAGTATGATAGT
TTTTTACCTCTACACAATCTTTGGAAAAACTATGTACGAAATTTATTTTT
GCATAAAAACGGAAAAGTGATGATAAGAGCTGAAGAAAGAGTCCTGAAAA
TAGACTATCATGGTGCTAAAATTGAGGTGAAGAAATGTAAATGTGAGTCA
TTTGTTGGAATCTCTGGAATCATTGTCAAAGAGACAAAAAATATGTTTGA
AATTATAACACAACAGAACGAACTTAAAGCCTTACCAAAGAGGGAGACGT
TGTTTGAATTTCTTATTCATGGACATAAAATCAGCATATATGGAAATGCT
ATTGTTGGACGACCTGGCGAGAGGATGGTCAAACGATTTAAGAATACTTA
TGAATCAGATATGATTTTAGATAATTTGTAATAATTTTTTATTTTTAACT
TATTTATTATTTGAAGATATTTTGAATTGGAATTCCTTTCTTGTTTTATT
TTTGCTCTTGATCAATGAAAGCTTTTGTTGGAATTGTCACCATTTTATTC
TTTAAAGGTTTAACCCTATTCATACTAGGCTTTTAGGGGCAGTTCATACT
AGGGGGCTGTTCCTGTACCACTCATTAACTTTTGATTTAG

Coding sequence (CDS) from alignment at scaffold_242:60792..66831-

>TCONS_00054312 ID=TCONS_00054312|Name=TCONS_00054312|organism=Clytia hemisphaerica|type=CDS|length=699bp|location=Sequence derived from alignment at scaffold_242:60792..66831- (Clytia hemisphaerica)
ATGGCTACAAATAAAGTAGATCTGAAGAGAGATTCATTGAAATTTCTCTA
TGAGACCCCTTCAAAGACAGAAGTTAAGACTAATGCCCAATTATTGGAAG
AATATCTAAAAGAAAATGCAATAAACAGTAACCACTCTGATATTGAAAAA
TTGAAAGAAAGATTGCGGTTCAAACCCTTGCTGTTAGAGAAATCACTTGT
TGGTAATAAGGATAAAAAGAAAAGGATAGAAAAAAGGAAAAACACCAAAC
TTGGCAGAGTGGCAATTAAAAAATTGAATCTCTACAAAATATCAAAAGAT
GAACAAAAGTATGATAGTTTTTTACCTCTACACAATCTTTGGAAAAACTA
TGTACGAAATTTATTTTTGCATAAAAACGGAAAAGTGATGATAAGAGCTG
AAGAAAGAGTCCTGAAAATAGACTATCATGGTGCTAAAATTGAGGTGAAG
AAATGTAAATGTGAGTCATTTGTTGGAATCTCTGGAATCATTGTCAAAGA
GACAAAAAATATGTTTGAAATTATAACACAACAGAACGAACTTAAAGCCT
TACCAAAGAGGGAGACGTTGTTTGAATTTCTTATTCATGGACATAAAATC
AGCATATATGGAAATGCTATTGTTGGACGACCTGGCGAGAGGATGGTCAA
ACGATTTAAGAATACTTATGAATCAGATATGATTTTAGATAATTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034249XLOC_034249Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054312-proteinTCONS_00054312-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054312-exon-scaffold_242-1575043694:66598..66831TCONS_00054312-exon-scaffold_242-1575043694:66598..66831Clytia hemisphaericaexon
TCONS_00054312-exon-scaffold_242-1575043694:60792..61706TCONS_00054312-exon-scaffold_242-1575043694:60792..61706Clytia hemisphaericaexon
TCONS_00054312-exon-scaffold_242-1510915933:66598..66831TCONS_00054312-exon-scaffold_242-1510915933:66598..66831Clytia hemisphaericaexon
TCONS_00054312-exon-scaffold_242-1510915933:60792..61706TCONS_00054312-exon-scaffold_242-1510915933:60792..61706Clytia hemisphaericaexon
TCONS_00054312-exon-scaffold_242-1491911889:66598..66831TCONS_00054312-exon-scaffold_242-1491911889:66598..66831Clytia hemisphaericaexon
TCONS_00054312-exon-scaffold_242-1491911889:60792..61706TCONS_00054312-exon-scaffold_242-1491911889:60792..61706Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:60792..66831 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
59.0558	50.4407	21.7656	14.4559	34.0342	21.3408	12.2214	13.4049	5.76225	6.39125	5.46685	3.43266	3.31895	4.76125	5.07624	4.44918	6.02833	3.67924	2.60817	3.38916	10.8392	9.87645	37.0167	34.9777	5.84097	8.35755	4.86924	4.68277	14.0791	16.0049
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002730RNase_P/MRP_p29
IPR016848RNase_P/MRP_p29-subunit
IPR023538RNP1
IPR023534Rof/RNase_P-like
Vocabulary: Biological Process
TermDefinition
GO:0008033tRNA processing
GO:0006364rRNA processing
GO:0006379mRNA cleavage
GO:0001682tRNA 5'-leader removal
Vocabulary: Cellular Component
TermDefinition
GO:0030677ribonuclease P complex
GO:0000172ribonuclease MRP complex
GO:0005655nucleolar ribonuclease P complex
Vocabulary: Molecular Function
TermDefinition
GO:0004540ribonuclease activity
GO:0003723RNA binding
GO:0004526ribonuclease P activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006379 mRNA cleavage
biological_process GO:0006364 rRNA processing
biological_process GO:0001682 tRNA 5'-leader removal
biological_process GO:0008033 tRNA processing
cellular_component GO:0005655 nucleolar ribonuclease P complex
cellular_component GO:0000172 ribonuclease MRP complex
cellular_component GO:0030677 ribonuclease P complex
molecular_function GO:0004540 ribonuclease activity
molecular_function GO:0004526 ribonuclease P activity
molecular_function GO:0003723 RNA binding
Blast
[Close]
BLAST of TCONS_00054312 vs. Swiss-Prot (Human)
Match: RPP29 (Ribonuclease P protein subunit p29 OS=Homo sapiens GN=POP4 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 3.988e-28
Identity = 58/134 (43.28%), Postives = 84/134 (62.69%), Query Frame = 2 
Query:  509 KKLNLYKISKDEQKYDSFLPLHNLWKNYVRNL---FLHKNGKVMIRAEERVLKIDYHGAKIEVKKCKCESFVGISGIIVKETKNMFEIITQQNELKALPKRETLFEFLIHGHKISIYGNAIVGRPGERMVKRFK 901
            ++L L+ I  ++Q+Y  FLPLH LWK Y+R+L           MI+A  ++LK D HGA I V K KC S+VGI+GI+++ETK++F+IIT+++ LK +PK   +F     G    IYG+    R  ER  K+FK
Sbjct:   82 RELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCSGLKPDTQPQMIQA--KLLKADLHGAIISVTKSKCPSYVGITGILLQETKHIFKIITKEDRLKVIPKLNCVFTVETDGFISYIYGSKFQLRSSERSAKKFK 213
The following BLAST results are available for this feature:
BLAST of TCONS_00054312 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPP293.988e-2843.28Ribonuclease P protein subunit p29 OS=Homo sapiens... [more]
back to top