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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053983 ID=TCONS_00053983|Name=TCONS_00053983|organism=Clytia hemisphaerica|type=transcript|length=439bp
TCGCTTTAGAATTTGTGtaggaaattttaaatcaagtgtatgcagttgcc
tttctcatacagatttgaaAAAGTGTAAGtttttgacttggtgccaaaaa
aagagcttgttttaaatgaaacaaaactgtcaAATATACGAAAGCATACC
TTTTCAGATAGTTGCTTTTGGTTTCCTCTTGAACATTATGATATTGTTAA
TTTTGAGCTGCTAAAAGTAATCTAGTATCGAAAGAATGGGTCATCTCCAG
AAAAACTATCGTTATTCGTCGTCTataaactttgcatattcaactctgtt
tgaCGTTGTTCCTTTCCATCGATATCAACAATCTTAAGtgaaataaagaa
caaagaccagaaagcagagtgatttttgatacacataagaaacataatat
tttcttgaataaaaaaagcCACAGCTTTTTAAATTCCAT Run BLAST on NCBI transcript from alignment at scaffold_237:503277..504682- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053983 ID=TCONS_00053983|Name=TCONS_00053983|organism=Clytia hemisphaerica|type=transcript|length=1406bp|location=Sequence derived from alignment at scaffold_237:503277..504682- (Clytia hemisphaerica)
TCGCTTTAGAATTTGTGTAGGAAATTTTAAATCAAGTGTATGCAGTTGCC
TTTCTCATACAGATTTGAAAAAGTGTAAGGTTTTTGACTTCGTGCCAAAA
AAAGAACTTGTTTTAAATGAAACAAAACTGTCAAATATACGAAAACATAC
CTTCTCAGATAGTTGCTTTTGGTTTCCTCTTGAACATTATGACATTGTTA
ATATTGAGCTGCTAAAAGTACTCTAGTATCGAAAGAATGGGTCATCTCCA
GAGAAACTATCGTTATTCGTCGTCTATAAACTTTGCATATTCAACTCTGT
TTGACGTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTAAA
TGAAATAAAGAACAAAGACCAGAAAGCAGAGTGATTTTTGATAAACATAA
GAAACATAATATTTTCTTGAATAAAAAAAGCCACAGCTTTTTGAATTCCA
TTTATCCTACCACAAACAATAAGGTTTATCATTTGAGAGCATCATTTTTA
CAAATGAAGGTTTTTACAAGAATAAGAAGCATCCCTTTTCAAAAATTATA
GCTTGAATAGTGCAAACTTTTCATTGGAATGTTAAAAGCCAATATCATTG
AATAATGGCATGTCGTTAAGTCCAGGGCCTCATAAACACGACGTTCGTTG
AGTTGCTCTTAGAATGTAACACATTGCTTTTGGAAGATTGTTTAATGGAT
TATAAAAGATCATTTTCTTATTTGAGTAAGAAAGAATACGTTTCCACGGT
TCGTACGTTGAACATGGGAAATATGAAACAATCAACCAAAATTAGCACCC
CTTGCATCGACAACATACCATATCTATCCTTTCAAAAAGTGATACTTTTT
TGTCAAAGAATGATGCTCGCTTTAGAATTTGTGTAGGAAATTTTAAATCA
AGTGTATGCAGTTGCCTTTCTCATACAGATTTGAAAAACTGTAAAGTTTT
TGACTTGGTGCCAAAAAAAGAGCTTGTTTTAAATGAAACAAAACTGTCAA
ATATACGAAAGCATACCTTTTCAGATAGTTGCTTTTGGTTTCCTCTTGAA
CATTATGATATTGTTAATTTTGAGCTGCTAAAAGTAATCTAGTATCGAAA
GAATGGGTCATCTCCAGAAAAACTATCGTTATTCGTCGTCTATAAACTTT
GCATATTCAACTCTGTTTGACGTTGTTCCTTTCCATCGATATCAACAATC
TTAAGTGAAATAAAGAACAAAGACCAGAAAGCAGAGTGATTTTTGATACA
CATAAGAAACATAATATTTTCTTGAATAAAAAAAGCCACAGCTTTTTAAA
TTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053983-exon-scaffold_237-1575043694:504604..504682 | TCONS_00053983-exon-scaffold_237-1575043694:504604..504682 | Clytia hemisphaerica | exon |
| TCONS_00053983-exon-scaffold_237-1575043694:503277..503636 | TCONS_00053983-exon-scaffold_237-1575043694:503277..503636 | Clytia hemisphaerica | exon |
| TCONS_00053983-exon-scaffold_237-1510915933:504604..504682 | TCONS_00053983-exon-scaffold_237-1510915933:504604..504682 | Clytia hemisphaerica | exon |
| TCONS_00053983-exon-scaffold_237-1510915933:503277..503636 | TCONS_00053983-exon-scaffold_237-1510915933:503277..503636 | Clytia hemisphaerica | exon |
| TCONS_00053983-exon-scaffold_237-1491911889:504604..504682 | TCONS_00053983-exon-scaffold_237-1491911889:504604..504682 | Clytia hemisphaerica | exon |
| TCONS_00053983-exon-scaffold_237-1491911889:503277..503636 | TCONS_00053983-exon-scaffold_237-1491911889:503277..503636 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_237 | supercontig | scaffold_237:503277..504682 - |
Blast
The following BLAST results are available for this feature:
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