|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005344 ID=TCONS_00005344|Name=TCONS_00005344|organism=Clytia hemisphaerica|type=transcript|length=1635bpRun BLAST on NCBI protein sequence of TCONS_00005344-protein >TCONS_00005344-protein ID=TCONS_00005344-protein|Name=TCONS_00005344-protein|organism=Clytia hemisphaerica|type=polypeptide|length=423bp MLELLKNMALNRGQIIVFGMTWVIYASSYLLRKPLGVIKTDLEAYYGLTPRun BLAST on NCBI transcript from alignment at sc0000052:407658..415185- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005344 ID=TCONS_00005344|Name=TCONS_00005344|organism=Clytia hemisphaerica|type=transcript|length=7528bp|location=Sequence derived from alignment at sc0000052:407658..415185- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000052:407658..415185- >TCONS_00005344 ID=TCONS_00005344|Name=TCONS_00005344|organism=Clytia hemisphaerica|type=CDS|length=15264bp|location=Sequence derived from alignment at sc0000052:407658..415185- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005344 vs. Swiss-Prot (Human)
Match: G6PT3 (Glucose-6-phosphate exchanger SLC37A2 OS=Homo sapiens GN=SLC37A2 PE=2 SV=2) HSP 1 Score: 91.6633 bits (226), Expect = 1.623e-19 Identity = 105/471 (22.29%), Postives = 197/471 (41.83%), Query Frame = 1
Query: 181 RGQIIVFGMTWVIYASSYLLRKPLGVIKTDL-----EAYYGLTPTE---------------------LGWLDTAFLLPYAFVAIMFGNLGDKYGNRNILVVSLLAMSFSMGSFG---FWDSPKV--FAVLLFINGGAQAQLYCNIARFLTSWFDSSQKTTMFGMWGTAPFAGGIIGTAVAVELQRRFSGDLKMMFLVPCVWIFFLAIATHFFL-KFPHECGMESP----DPEKQQLKEDEP-------------TAVQPKK-------ALNFIETWKIKMVPELCWSMFGAKLVRYCLYMWLPMYLAKALKYDKGYAGMFSTTFEIGGVFGSFCNGFYINRLMGGRSYLGVFVAFATSGLSLYLFELTSTWSVFFNFIFLFMAGAANCGPDLVVSGSLXXXXXXXXXXXXXXXGL------VNGFGSLGTIIEGPFIAFVMTQFGWSGAFYSMVFLSLGASLAVGKAALAE 1407
RG I++ +T++IYA ++ RKP+ ++K+ L E + T LG +D AFL+ YA + G G++ R L +L FG FW+ ++ F V+ NG Q + ++ + +WF ++ + G+W + G I+G+ +A +G + F+VP + + + T FL + P + P +P + Q ++P T + K A++F +I V E + AKLV Y WLP+Y+A + AG ST F++GG+ G G + G + V + A ++L+ + + + L + G GP +++ +++ ++ + + L ++G GS+G + GP +A +++ GW+ FY ++ + A L + + E
Sbjct: 22 RGLILL--LTFLIYACYHMSRKPISIVKSRLHQNCSEQIKPINDTHSLNDTMWCSWAPFDKDNYKELLGGVDNAFLIAYAIGMFISGVFGERLPLRYYLSAGMLLSGLFTSLFGLGYFWNIHELWYFVVIQVCNGLVQTTGWPSVVTCVGNWFGKGKRGFIMGIWNSHTSVGNILGSLIA---GIWVNGQWGLSFIVPGIITAVMGVITFLFLIEHPEDVDCAPPQHHGEPAENQDNPEDPGNSPCSIRESGLETVAKCSKGPCEEPAAISFFGALRIPGVVEFSLCLLFAKLVSYTFLYWLPLYIANVAHFSAKEAGDLSTLFDVGGIIGGIVAGLVSDYTNGRATTCCVMLILAAP--MMFLYNYIGQDGIASSIVMLIICGGLVNGPYALITTAVSADLGTHKSLKGNAKALSTVTAIIDGTGSIGAAL-GPLLAGLISPTGWNNVFYMLISADVLACLLLCRLVYKE 484 The following BLAST results are available for this feature:
BLAST of TCONS_00005344 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.