TCONS_00053990 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053990
Unique NameTCONS_00053990
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length740

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053990 ID=TCONS_00053990|Name=TCONS_00053990|organism=Clytia hemisphaerica|type=transcript|length=740bp
GATAAATCTTGCTTTAACTGAACATCTAACAGTCAGGAGTAACCGCCTAG
GCAGGCCtaggaacaaatttttgaaatactccTATCTAAGATAAAAGTAA
TTATTTAGGTTTACAAtttattcttaggttagaaCAATTAAAGTTATCAT
GCTTTACTGTTACTGAACAGTAGTAAAAATAATCGCATACCCAAATCAAT
TGCAGAAGGTTGCACAGCCTCATTTTCATTGAAAGTGAAAGTTTGAGCTC
AGGAAACAAGCGGAGACTCGAGCTACATACATAAAGCCCTTTCTACTACA
TTGTATTAACATGGTATCGAGGGCTTtagcaaaacctaaattttcaaatt
caaaatggctcAAAAGAGTCCCAAAGTTTTAATCCTTATCTAGGAGTATT
TTCAGGTCGGACCATCTCTTATCATATCTCAACGACCCGCCCATGAAACT
GTCCAAATTTTTGCATACATATCAATTTTGCTTTTCTTAGTTTTATGGGC
ATAGCTAGAAGATGCGACCAGAAGGCTGCAATGGTTAGTCAGTTTTTTAT
GCCTAGATAAGTACTTTTGAGTtcttaataaacgtacagtaaCAAATAAA
CATACAGGGTTGAAAATGGAGGCATAAATTCAAATTGAAGGGTCTTTTCG
GGTTATGTTAGGGTGTAAATAATGGTTATTCTGCTTTCATTTCATGAATA
GATAAAACCTTCATCGTCAAAGAAAGGTATTTAATCTCAG
Run BLAST on NCBI

transcript from alignment at scaffold_237:45893..46632

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053990 ID=TCONS_00053990|Name=TCONS_00053990|organism=Clytia hemisphaerica|type=transcript|length=740bp|location=Sequence derived from alignment at scaffold_237:45893..46632 (Clytia hemisphaerica)
CTGAGATTAAATACCTTTCTTTGACGATGAAGGTTTTATCTATTCATGAA
ATGAAAGCAGAATAACCATTATTTACACCCTAACATAACCCGAAAAGACC
CTTCAATTTGAATTTATGCCTCCATTTTCAACCCTGTATGTTTATTTGtt
actgtacgtttattaagaACTCAAAAGTACTTATCTAGGCATAAAAAACT
GACTAACCATTGCAGCCTTCTGGTCGCATCTTCTAGCTATGCCCATAAAA
CTAAGAAAAGCAAAATTGATATGTATGCAAAAATTTGGACAGTTTCATGG
GCGGGTCGTTGAGATATGATAAGAGATGGTCCGACCTGAAAATACTCCTA
GATAAGGATTAAAACTTTGGGACTCTTTTgagccattttgaatttgaaaa
tttaggttttgctaAAGCCCTCGATACCATGTTAATACAATGTAGTAGAA
AGGGCTTTATGTATGTAGCTCGAGTCTCCGCTTGTTTCCTGAGCTCAAAC
TTTCACTTTCAATGAAAATGAGGCTGTGCAACCTTCTGCAATTGATTTGG
GTATGCGATTATTTTTACTACTGTTCAGTAACAGTAAAGCATGATAACTT
TAATTGttctaacctaagaataaaTTGTAAACCTAAATAATTACTTTTAT
CTTAGATAggagtatttcaaaaatttgttcctaGGCCTGCCTAGGCGGTT
ACTCCTGACTGTTAGATGTTCAGTTAAAGCAAGATTTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034075XLOC_034075Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053990-exon-scaffold_237-1491911889:45893..46632TCONS_00053990-exon-scaffold_237-1491911889:45893..46632Clytia hemisphaericaexon
TCONS_00053990-exon-scaffold_237-1510915933:45893..46632TCONS_00053990-exon-scaffold_237-1510915933:45893..46632Clytia hemisphaericaexon
TCONS_00053990-exon-scaffold_237-1575043694:45893..46632TCONS_00053990-exon-scaffold_237-1575043694:45893..46632Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_237supercontigscaffold_237:45893..46632 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.334065	0.39092	0.983439	2.22033	0.450506	0.213597	0.257696	0.402087	0.0563021	0.348696	0.473834	0.222486	0.0888706	0.138439	0.0379387	0.040714	0	0.0514086	0.142048	0	0.129197	0.0945269	0.0766066	0.0696465	0.143468	0.384127	0	0.195546	0	0.0755546
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053990 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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