TCONS_00053853 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053853
Unique NameTCONS_00053853
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length827

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053853 ID=TCONS_00053853|Name=TCONS_00053853|organism=Clytia hemisphaerica|type=transcript|length=827bp
CTTCAGTATCGTGTATATTTTGAATCTGAGTCAAGAGATTTCTTCCAAGT
CTCATAATAATTCACCTAAGTGAACcgaaagacatttttttaaacaaact
gTTGACAAGAAATCTAACATTATTCATATATAGATAATCTAAATATTTGA
ATATCTTATTATGGGTGTACATGGATCAAAAAGCAAAATACCGCCTCAGC
AACTATGTGAGTTGGTCAATCATACTCATTTCGATAGCAAAGAGTTGAAG
AAATGGTATAACGGTTTCCTGAAGGAATGTCCTGACAATCAAATGAGCAA
GGAACAATTCATTAAACTGTATGGTTCGTTCTACGCACATGGGAATGCAG
CGAAATTTGCACAACATGTGTTTCGTACCTTTGATTATAACAGTGATGGT
AACATAGATTTCCGCGAATTCATCATGTCACTATCCGTCACAACTCGAGG
TTCAATCGATGAAAAATTACGATGGGCATTCCAAATATATGATATCGATG
GAAACGGTTTCATCACACAAAACGAACTCTTCAGTATCATGAAAGCTGTT
CAAAATATGGTTGGTGCTATTGACGATGAAAATATCATGAGTAAATCAAG
AATGTCTAATGTTTTCAATAAGATGGACCTTAACAAAGACTGTAAATTGA
GCTTAGAAGAATTTCTTACGGGAGCACGAGAAGATGAGACTTTTGTTCAT
CTGTTGAGCGCATATAACGGTAAATAAGCTTCAGTAAACGGATGGAGTCA
TACTGGTATAATAATGTCTATCTTTATTCTTAACGTAATATCTGGAATCT
TCAATTTCATTAGaagaatgaaagaat
Run BLAST on NCBI

protein sequence of TCONS_00053853-protein

>TCONS_00053853-protein ID=TCONS_00053853-protein|Name=TCONS_00053853-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MGVHGSKSKIPPQQLCELVNHTHFDSKELKKWYNGFLKECPDNQMSKEQF
IKLYGSFYAHGNAAKFAQHVFRTFDYNSDGNIDFREFIMSLSVTTRGSID
EKLRWAFQIYDIDGNGFITQNELFSIMKAVQNMVGAIDDENIMSKSRMSN
VFNKMDLNKDCKLSLEEFLTGAREDETFVHLLSAYNGK
Run BLAST on NCBI

transcript from alignment at scaffold_234:477441..483426-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053853 ID=TCONS_00053853|Name=TCONS_00053853|organism=Clytia hemisphaerica|type=transcript|length=5986bp|location=Sequence derived from alignment at scaffold_234:477441..483426- (Clytia hemisphaerica)
CTTCAGTATCGTGTATATTTTGAATCTGAGTCAAGAGATTTCTTCCAAGT
CTCATAATAATTCACCTAAGTGAACCGAAAGACATTTTTTTAAACAAACT
GTTGACAAGAAATCTAACATTATTCATATATAGATAATCTAAATATTTGA
ATATCTTATTATGGGTGTACATGGATCAAAAAGCAAAATACCGCCTCAGC
AACTATGTGAGTTGGTCAATCATACTCATTTCGATAGCAAAGAGTTGAAG
AAATGGTATAACGGTTTCCTGAAGGAATGTCCTGACAATCAAATGAGCAA
GGAACAATTCATTAAACTGTATGGTTCGTTCTACGCACATGGGAATGCAG
CGAAATTTGCACAACATGTGTTTCGTACCTTTGATTATAACAGTGATGGT
AACATAGGTGAGTCTCTTAATTATTTATTTTATTATACTCTGGAAATCCT
GTAAACCCAGGGTCGGAAAGTTTCAAGCTTTGCACAATAATTGAATTAAC
TCATTCTACAGTATGTGGCCCCCAAAACGGCGATCAAATTTGAAATTTCT
CTCAAATCTAGAGGAAAAGAGATTTTACAAAGATTTTTGCTGCTTAAAAA
CCATTAACATCTCTACTTTATTTCCTGGAAGTTCTTTTTCAAAATTTTCA
ATTTCAACAATATTTTTCAATCGCTTAAAGATAGGTAGCTTTTTTCTAAT
GGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTTTCTCGAGATATCTTTAAGATATGAATACAAAATTTTGAC
CATAGTTTTGAAATATGATTTAGAGGGTTTTGGGCATAAATTTATTTGAT
AAAATTTTTATACCCCTGGTTGTCAAAATGCAGGTTTGGGGCCCCCAAAA
CGGAGGTGTAGCTAAAATCAAATTAATAGGGGGAAAAACTATGAACATAT
TTGTGTTTTCCCTTGAATTTAGGACCCGATGGATGTAAGATTTTTGCTTT
TTATGAAATATTTCAAGATTTTCGATATTGCAAAGTCCAAACTGAAAATT
TAGAAATTTTCAAAATGACAATTTTGATTTAACAACGTCTTAATCAAGTT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTCTCAAA
CCAGCAAAAACATGCTCATTTTTAAGTATAACCATCATTCTTTCAAAATA
AACAAAAATCGTTTAATTCTGATAAATCTACAAGTCAGAACCTTCATTTT
AATGAAAACCTCCGTTTTGGGGGCCGTCTCCGTTTTGGGGGCCATATACT
GTAATTAGAATCTCTATTATTCGAATCTCTCTGTAACTCGAACTAAAAAA
TTGTTCTCCTCAGCTGGAATGTGTTTTAAATTACTCTCTGCAATTCGAAT
CTCTGGCTGAAGTCTGTACATATTTTACATTTAGAGAGTCAGTCTATTAA
ACCCCTGTGTCATAGACCTGCTGGCACCCCAGCCCCACTGGAAAATTTGC
CGGAAATTTTGTCCCGTTTGGAAAAATACCCAACAATTTCTAATAATTTC
AGCCCCACTTGGAAATTAACTTTGATTATTTAATTTAATGGAAAAAATTG
ATCCACAACCATCCCCACTAAAATTTTTTGGCTCAAAACAATAGAACTTC
TATCTATTTGACAATTACACGGAATCGAAACATAGTAGATATAGTTCGAA
ACTCGCATATATTTGGTGGACTCAAATAGGAACTTTTTCCATGATCAGGG
TATTTTTCTCAGGGTCGTTAGCCATTCTTAGAAGTTTTTTTTGATTCTTT
AAGAATTCTAGCTATGGAATTCTTTTGGAATATCTTTCGATGAATATTGT
TAAAATATGGACTAGTAAAACATCCAAGGTTAAAGGCTATGCTATGACCT
TTTGATATTTTATCTATTTCGAGCATTTCCGCATATTAGTTTAAAAACAA
CCACAATTTGTCAATGTTGAATCGTCTTTCTTCGAGTTCTTAGCACCCAT
GTGTGGTCGAGACACAAAAAGGGTCAAGTATACTATGAATAACACAGTTT
AGCTTCCTTTAAAATTCAACTTTTGTAAAAGGTGAATAAAATGGAAAGAG
TTTAGCTTCCTCTAAGATATACCCCCTTCTCACAGACCCAGTGGGATTTT
ATTAGCCAGTGAGGGTAAAAATAACGGACCAAAACTCAATGGGGATTGAT
ATTCCCATGTTTTTTTATGGCAGGGGATTTGAAATCCATTGTTTTCTAGC
CAAAAACTCAGTGGGGACGGAAAAAATAGCACAATATTTTGCAGTGTGGG
TTTGCTTATCTGATCATTTTCAGCGGGACAAAAATTTCAGGATAATTTTC
CACTGGGGACGATATTTTGGCCGATTTTTCCAGTGGGAAGGGTTCCCAGT
GGGTCTGTGAGAAGGGGGTGTTAAAATTTAACCTGTGACAATGGACATAA
AGAACTTTATCCTGAATCAATTACATCGATATTCAAAAGAATTGAAGACA
GAGAACACATATCATTATGTTAAGCTTGAGTAGGTTCTGTCTTTAAATTA
CAACTAGCATTTTACAACTCCTGTCTTACAGGCCCGGTGGAACTTTTTTC
CTCAGTGGAGATAAACATTCCTATTGAAATCCCAATGGGGATAGAAATTC
TATTGTTCCAAGGTTAAAAAATCCAGTGGAGATGGTTTTGGAGTGCAATT
TTTAAACATGGAATTTCGAATGGGGAGGAAATCAAACTCAATTCCCCAGT
GGCGCTGAAGTTACAGGGTCTTTTCCCACCGGGGACGAAATTTCTGCCAA
ACTTTCCAGTGGGGCTAGGTTCCCAGTCACAGATATCTGTAAAGCCCGAA
GGGCTAGATAGGCAACTTTAAGCTTTATTCAGCAAAAAAAAAGTGAATAT
CGGAAAAAAATTGTTGCTATTGTTTTCTAAAACCCGCGAAGCTTCTGATT
GGTCCATCTCTCAAATTCTATTGTAATGTCACGTGACTCTGGTAGGAAAT
CCTTCCAAAGATGAGCTTCACTTCACCAAGGCCGCTTATCTAGCCCTTCG
GGCTATACTATATCATTGGTCCCAGTGGGTCTGTGGCACTGTGGTGTCAT
ACAACTAGCATTTTACAATTCTTCTATCTATTTAAGTGAGTTTACTTAAA
AAGAGATAATCCCGATTTTAGGGCTTTGTCTAAGATAATCTTTTTTCAGT
TTCAGTTTGGCATTAGGGCATTGTAGATTGGATGTGAAAAAATACTGCTG
TACCCAGCAGAAGATAAATGATTTTAACGGTTATTTCACAAATATCCGGA
CAATATAGACTATTTATTTATGTATTGTTTCATTCCCATAAAGGTAAACC
TTAATCAAAAGGTTTAACTTTACAGTTTGGTATGTTATGATAAAAGCTTT
ATAGACTTTTTTTTATAAGAACATGCACAATTTTTGTAGCCTTCGGATGT
TCTTCATTTTTTGAGATGTAAGCCTAAAAATATTCTTAGCATGTTTTTAT
TTTGACCATTGTGTAAGTATTTTTTACCATTTTCCTAAGGAATAGGATGT
TTTTTGAGCCCTCAAAGCCTTAAATTGTTCTTAACTTGTTCTTAACATTT
TGGTCATCGAAACCCCCGGGGGGGGGTTAGCACTGGGTTTGCGGACTGAC
GGTATGTGCGGGCCAAAAATTGGCTTTTAAAATTGCAGCAAAAATCAGTG
AAAATAATACCCTTACAGTGCATTTTCCCTCAAATTTTCGATCCCTTTCG
TGCAAAAAATTGTCAGAACTCTAGCATTTTTGGTCAAAATATCCAGATTT
TTCAGAAATTTTCTGAAACTTCTACCCTTACAGTGCATCTCTAGTTTTTC
TGACCCTTACAGTGCATTTTAAACATATTGGAAAAGGTACCCTTAGGACC
CGCACATACCCGTCGGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTATGCTCTTATATAGTTTTGATAAAAGCTTT
GTAGACGCTATAAATCATAATTTCTTGTTTTGGAATTTGAATGTTGTACC
TCCCCACTCTGAACACCTTCCTCTAAAATGTCAAAATATTTGCAGACAAC
ATTTTTAGAGTCAATAATAGTTGTTTAATAATCAAAAATTTAATAACATG
CTCTAAGCAAGAAAAATTTCAGATGTTGCTATTCTACTTTCCCTGAGCCT
AATCTTTTTTAAATCAAAAAATATATGTAACGAATTTTGAACCAATGAAA
CACCGAAAAAAAAAAAAAAAATGCTGGAAATATCTTCCACATCCACATTA
GCATAGAATCATTAATCACAATCAAATCAAATACATCATGCAAAAGCGGG
GATGTTAAACCCTTTCTATGGCACAACTTCTGGAATGAGTAAATAGACCG
ATAGAATTGAGATGGTAAAATTGTGGTCAGAAGATTTTTTACACGCTTTT
TTTATAAAAACCAGAAATCCTTGGCTAAGGCTCGGCTTTGTAACCTTTAA
TAGGGCTTAAAATCAGTATTTTCACTATCAGCATTTTTGAAATCTGAGAC
TCGGTTAATCCTTTTAAGGGTTTGGACAAAATTGAGCCTCATGTTCTTAA
AAAGTTTTTCTTACAAAAAAGGGTATAATGGAAATTTGGGTAAGTTAAAA
AATCAAAAACCTTGTAAGATGATAATGGAGTGTGCCTCGTCTAAATATTG
CTCTCTTTTCCAACAGATTTCCGCGAATTCATCATGTCACTATCCGTCAC
AACTCGAGGTTCAATCGATGAAAAATTACGATGGGCATTCCAAATATATG
ATATCGATGGAAACGGTTTCATCACACAAAACGAACTCTTCAGTATCATG
AAAGCTGTTCAAAATATGGTTGGTGCTATTGACGATGAAAATATCATGAG
TAAATCAAGAATGTCTAATGTTTTCAATAAGATGGACCTTAACAAAGACT
GTAAATTGAGCTTAGAAGAATTTCTTACGGGAGCACGAGAAGATGAGACT
TTTGTTCATCTGTTGAGCGCATATAACGGTAAATAAGCTTCAGTAAACGG
ATGGAGTCATACTGGTATAATAATGTCTATCTTTATTCTTAACGTAATAT
CTGGAATCTTCAATTTCATTAGAAGAATGAAAGAAT

Coding sequence (CDS) from alignment at scaffold_234:477441..483426-

>TCONS_00053853 ID=TCONS_00053853|Name=TCONS_00053853|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_234:477441..483426- (Clytia hemisphaerica)
ATTTCCGCGAATTCATCATGTCACTATCCGTCACAACTCGAGGTTCAATC
GATGAAAAATTACGATGGGCATTCCAAATATATGATATCGATGGAAACGG
TTTCATCACACAAAACGAACTCTTCAGTATCATGAAAGCTGTTCAAAATA
TGGTTGGTGCTATTGACGATGAAAATATCATGAGTAAATCAAGAATGTCT
AATGTTTTCAATAAGATGGACCTTAACAAAGACTGTAAATTGAGCTTAGA
AGAATTTCTTACGGGAGCACGAGAAGATGAGACTTTTGTTCATCTGTTGA
GCGCATATAACGGTAAATAAATGGGTGTACATGGATCAAAAAGCAAAATA
CCGCCTCAGCAACTATGTGAGTTGGTCAATCATACTCATTTCGATAGCAA
AGAGTTGAAGAAATGGTATAACGGTTTCCTGAAGGAATGTCCTGACAATC
AAATGAGCAAGGAACAATTCATTAAACTGTATGGTTCGTTCTACGCACAT
GGGAATGCAGCGAAATTTGCACAACATGTGTTTCGTACCTTTGATTATAA
CAGTGATGGTAACATAGATTTCCGCGAATTCATCATGTCACTATCCGTCA
CAACTCGAGGTTCAATCGATGAAAAATTACGATGGGCATTCCAAATATAT
GATATCGATGGAAACGGTTTCATCACACAAAACGAACTCTTCAGTATCAT
GAAAGCTGTTCAAAATATGGTTGGTGCTATTGACGATGAAAATATCATGA
GTAAATCAAGAATGTCTAATGTTTTCAATAAGATGGACCTTAACAAAGAC
TGTAAATTGAGCTTAGAAGAATTTCTTACGGGAGCACGAGAAGATGAGAC
TTTTGTTCATCTGTTGAGCGCATATAACGGTAAATAAATGGGTGTACATG
GATCAAAAAGCAAAATACCGCCTCAGCAACTATGTGAGTTGGTCAATCAT
ACTCATTTCGATAGCAAAGAGTTGAAGAAATGGTATAACGGTTTCCTGAA
GGAATGTCCTGACAATCAAATGAGCAAGGAACAATTCATTAAACTGTATG
GTTCGTTCTACGCACATGGGAATGCAGCGAAATTTGCACAACATGTGTTT
CGTACCTTTGATTATAACAGTGATGGTAACATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033983XLOC_033983Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053853-proteinTCONS_00053853-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053853-exon-scaffold_234-1575043694:483020..483426TCONS_00053853-exon-scaffold_234-1575043694:483020..483426Clytia hemisphaericaexon
TCONS_00053853-exon-scaffold_234-1575043694:477441..477860TCONS_00053853-exon-scaffold_234-1575043694:477441..477860Clytia hemisphaericaexon
TCONS_00053853-exon-scaffold_234-1510915933:483020..483426TCONS_00053853-exon-scaffold_234-1510915933:483020..483426Clytia hemisphaericaexon
TCONS_00053853-exon-scaffold_234-1510915933:477441..477860TCONS_00053853-exon-scaffold_234-1510915933:477441..477860Clytia hemisphaericaexon
TCONS_00053853-exon-scaffold_234-1491911889:483020..483426TCONS_00053853-exon-scaffold_234-1491911889:483020..483426Clytia hemisphaericaexon
TCONS_00053853-exon-scaffold_234-1491911889:477441..477860TCONS_00053853-exon-scaffold_234-1491911889:477441..477860Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_234supercontigscaffold_234:477441..483426 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.114815	0.0559812	0	0.254368	0.232251	0.30588	23.1752	27.7077	27.2357	16.778	14.8311	19.5371	13.3248	10.9038	6.45436	11.0544	22.4527	24.2501	7.56714	7.98232	43.8487	37.6047	7.63537	9.69438	14.1146	23.9837	0.0787169	0.0840088	0.637177	1.62296
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00053853 vs. Swiss-Prot (Human)
Match: NCALD (Neurocalcin-delta OS=Homo sapiens GN=NCALD PE=1 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.258e-62
Identity = 88/179 (49.16%), Postives = 133/179 (74.30%), Query Frame = 2 
Query:  182 SKIPPQQLCELVNHTHFDSKELKKWYNGFLKECPDNQMSKEQFIKLYGSFYAHGNAAKFAQHVFRTFDYNSDGNIDFREFIMSLSVTTRGSIDEKLRWAFQIYDIDGNGFITQNELFSIMKAVQNMVGAI----DDENIMSKSRMSNVFNKMDLNKDCKLSLEEFLTGAREDETFVHLL 706
            SK+ P+ + +L+  T F   E+++WY GFL++CP   +S E+F K+YG+F+ +G+A+KFA+HVFRTFD N DG IDFREFI++LSVT+RG +++KL+WAF +YD+DGNG+I++ E+  I++A+  MV ++    +DE+   K R   +F +MD N+D KLSLEEF+ GA+ D + V LL
Sbjct:    6 SKLRPEVMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEK-RTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIVRLL 183
The following BLAST results are available for this feature:
BLAST of TCONS_00053853 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCALD1.258e-6249.16Neurocalcin-delta OS=Homo sapiens GN=NCALD PE=1 SV... [more]
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