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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053830 ID=TCONS_00053830|Name=TCONS_00053830|organism=Clytia hemisphaerica|type=transcript|length=1272bp CCCATATTCATTTTtgtctggaagagcccatttcatAACAGATAGAAACC ATGGCCTCTTTTGGAATATTTATACAGCTTGAAATTTGTCACCAATTTAT TACTTTACATAATACTGCTATATATAATCCGTTTTTAAGCCACCCTCGAA GCAGTCGTAGCAATCAGTATAAGCTCGAGATGGGGCATTTTGCAACGGCC TTTTTGTTGCTGGTTTCGTCACTGATTGGGATTGTTTATTCGAGGCCCGC AAGGGATGTTGGGAAATTTCCATGTCATGCTTTTCTGGATATAATTAACG AATGGCCTGATGGTTATAGAGGAATGTTAGAGTTACCAGTTTTACAAGAG ATGACACCATATCCTGGAGATTTATTCAAAGATGGTCATGTTATTCTCAA GTTCAACAGATCTCTAAATGCATTGGATATCCCTGAAGGTGATCACGGTT TACGTAGAGTATCAAACGATAATCGCGAGTatcgaattttcatcaaattt acCGACCAACTGAGAAGACTTCGTTTGAATAGTTTCTTCAGCCTTGATAT GACCATTCATCACGAACGCTGGATGAAAGGCAAAATTGGAATCACTGGTC TCCAATTCGGGAAATTTCAATGCCCCGAACCCAAATCTGAAGCAATCAAA TACCCCGATTGTGACCAGTACATTCGGATGATTGACAACTCTCCACCGGA CGGTTATCGGGCGGAGTTTAACATCCCAGTCAATTACACCATGAAGGGTT GGAATATGGAAGTTGGTTTCACCAAAGAAATCTTAGTTCTTGATGTTCCT CAAGGAATCAGAACACCAGCAGCCAGGAATGTCAAAATTTTCAGCATTGA GAATCGAGAATATAATGGCTTTATTAAGAagaattcgattttcaaattgG AATTCATGGTGCATTTTGATCGGAATCGTTTTAAAAAGCGATACGTTAAG ATTAATTATATTCGATTCGGTACGTTCCAATGTCGATTGCCATCCTTTGA TCATCATTCGGTTGATATGTAACTTTTGCATCTCAAAATTATGTCAATAT ATGTTCGAAATTTCCAACTGAAATTTAGAATTATCTATTATTGAATCGAA AAACGttgattttatttataaaaaccGAGATTGAAACATTTCAACTGTTA TTTTCGtgttattttccattttgatTTCAATCCTCCACATTGACGAGCCA CGTGTTGGTGCAATGATATTAAAGTATAAGGttgtaacaaaaattttatc aataatAGACATTTCAGTTTTC Run BLAST on NCBI protein sequence of TCONS_00053830-protein >TCONS_00053830-protein ID=TCONS_00053830-protein|Name=TCONS_00053830-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
MASFGIFIQLEICHQFITLHNTAIYNPFLSHPRSSRSNQYKLEMGHFATA FLLLVSSLIGIVYSRPARDVGKFPCHAFLDIINEWPDGYRGMLELPVLQE MTPYPGDLFKDGHVILKFNRSLNALDIPEGDHGLRRVSNDNREYRIFIKF TDQLRRLRLNSFFSLDMTIHHERWMKGKIGITGLQFGKFQCPEPKSEAIK YPDCDQYIRMIDNSPPDGYRAEFNIPVNYTMKGWNMEVGFTKEILVLDVP QGIRTPAARNVKIFSIENREYNGFIKKNSIFKLEFMVHFDRNRFKKRYVK INYIRFGTFQCRLPSFDHHSVDM Run BLAST on NCBI transcript from alignment at scaffold_234:203369..207304- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053830 ID=TCONS_00053830|Name=TCONS_00053830|organism=Clytia hemisphaerica|type=transcript|length=3936bp|location=Sequence derived from alignment at scaffold_234:203369..207304- (Clytia hemisphaerica) CCCATATTCATTTTTGTCTGGAAGAGCCCATTTCATAACAGATAGAAACC
ATGGCCTCTTTTGGAATATTTATACAGCTTGAAATTTGTCACCAATTTAT
TACTTTACATAATACTGCTATATATAATCCGTTTTTAAGCCACCCTCGAA
GCAGTCGTAGCAATCAGTATAAGCTCGAGATGGGGCATTTTGCAACGGCC
TTTTTGTTGCTGGTTTCGTCACTGATTGGGATTGTTTATTCGAGGCCCGC
AAGGGATGTTGGGAAATTTCCATGTCATGCTTTTCTGGATATAATTAACG
AATGGCCTGATGGTTATAGAGGTAAAAGTTTTGCTAAATTCCGTTTTTCG
GACTAAAAAAACAGTCCAATATTCTGTCTCAATCCGGGGGGGGACACTTA
GGTAGAATTGGATACGGGGACGTGCCAGTGGTCAGGGTCCCTTTTTTAGG
CTCTGATGATATCTGATAGGGTCTCAAACTGATTTTCAAGATGTGTTTCT
TATCTGACAGGGTCGACTTTGGGTTATTTTGAAGAATTTTCAGGGTCGAT
ATTTAAAGATTTTTCACCTCTTCCTGTACTTTTAGTCATTTTTGCCACAT
TTGAGGGTGAAAATGGGAAAATCTTTCAACTTTTCGTTCAGACAGGGTCC
CAAATTTACCAAACATTCATAACTGACAGGGTCAGCTTTTCGAACTCCAT
CGTACTTGGCCATAAATTACAGAATAATATGGTTGTGCTTTCTTACATTC
TTATTTTTCAGAACAATGAGGCTCAAAAATTCCAAAAAATAAGAACAATT
TAAGAACAATCCTTTGCCTGAAATGGCGGACTCTCGGGCAAATTGAGGGT
ATCGAAACAATAAAAATATCAAGGCAGAAACAACCCAAATTTCTCCTAAG
AATTAGAACAGGATAAAAAAAATTTGAGGCTAAAAATTTTGAATTTGAAA
AAATAAGAACAGCCAAGCCTCATCAAAAATTAGCTGGCTCTTTAAAAAAA
AGAGTCTATATGCCAACGGTAACAGATACCGTTAATAAAATTACATGGAT
TACACTAGATTCAACGTCATCAGTTTTATCTCCCTTTTTTTTAGGAATGT
TAGAGTTACCAGTTTTACAAGAGATGACACCATATCCTGGAGATTTATTC
AAAGATGGTCATGTTATTCTCAAGTTCAACAGATCTCTAAATGCATTGGA
TATCCCTGAAGGTATAATGACTTTTTAGTGTATTTCAACATCATTCGGAC
TACGATATTTAACCCAACAATAACTGCATGTCAATAAGAGAAATCACGTC
TCTTTCACTTTTTAGTGAACACGTTTTTTTATTTCTAAGAAACACACTTT
TAGGAAACATGAGGCTCAGAATGCCTAAAAACTAAGAGACATTGCTGAGG
CTGAGAATGAGAAAATATAATATTTTTTAATTCGGTTTTTTAAGAACCTT
CCAATACAAACAAATGTTTTTTTTCTTTGCATGAAAAATAGGCTGATTAT
GTATAAAAAAGTTTAGAACCATGTAAGAAACATTTAAGGCTCAAAAGACC
GATTTCTTAAGAAACATTGAAGCTGCTTGGTAAAACTAGTTTCTTAATAA
AAAAAACGTGTATTTCAACAGCGACAACCCAACAATAACTGCAAGTTTAT
AACAGAAATCACGTCTCATTTGACTAGCGAGCAATCTGTGTGCTTTGTGG
AAGAGGGTCTAATATACAACATTGTATCAGAAACCCCCATCCCCTCTTGA
AAATTTGACAAAGTTTTGTCCCCGGTGTAAAAATACCTTGCAATTTCAGC
CCAATTGGTAAATTGACTTTGTTTATTCCCATTTGAAAATGGAAAACACT
GCATCCCAAACCACTGGATTATTTTTTATCTGGGTACAATAGAATTTCCA
TCTCTCTTGGGATTTCGATAGAAATTTTCACCGGAACTGTGAGGTTGTTA
ATATAATTTTTGAACTATAGTTTTTATAAGCTAAAAATTCGAAATTGTAA
AGCTCATAGAAATTTTCTTTATAGTATTTTTTACAACTATTAACCCGGGA
GGGGGGTACTACCCTTGCCGACCGACAGGGGTGATCCACTGAGGTTCGAA
AAATGGACCCTAGATGGGACTGGTTTTTTGAAAAAAATTGATAAAATTTG
AGGAAAAAGTGACGCTTAATGGAAATGCGTTTGTGTCAGAGAGCTAATGA
TGCGTATGTTGGTAGAGAATCTTTTACCATTCCTAAACTTTGGCTCTCAT
TTTTTTTTAGGTGATCACGGTTTACGTAGAGTATCAAACGATAATCGCGA
GTATCGAATTTTCATCAAATTTACCGACCAACTGAGAAGACTTCGTTTGA
ATAGTTTCTTCAGCCTTGATATGACCATTCATCACGAACGCTGGATGAAA
GGTAGGGAAAAATACAATTTTTTTATTAGAACACCCAAAATTATTTTCAG
CCTACGGATGTTTTTAACTTTCCTAGTTTTAAGCATAAAAATGTTCTTAT
GTTAGTATTTTAGTGCAATTTACTAATAAATTGAGTGTTTTAGAGTTTTC
AAAGCCTTAAAATGTTTGTTCATAATATTTTAGTGAAGCCCTTTGTTCCT
ACATACCATAATGGTAGTTTGTTCTTATAAAAAAACGAGAAAGCTTTTTT
AAGACACCAAAAAAACAGAAGCAATCAAGAGATTCTTTCGTCAAAGAAAG
AAAGCCTATGGAAAAGTTCAGTTGAGTTTTGACTTAATACTACACGCTAT
TTTTATAAGAATGGTGTCTTTTTGCCTTTCATCATGGATATCGTAAGCAA
ATTCTTAATTTTTGGGCCAATTTTATCATGAATATTCGTATAAAGTATAT
TCTTATAAAATATTATTACAACGTTATTACAACGTCTTAATAATATGTGT
ATAATTTGGGCTGAGCCTGGATGTGCTTATTCCTTTTGACAATTTTGAGC
GTTCTTTAAATTAATTCACTTAAGAATACAGAATTATGGTTTATAAAAAT
TGGCCCTCAAGTCAATCAAGTCTGCTCTAATTCAAAGTTTGGAAGTAAAA
GAATTACTGCAATAACAAACTTAAGATAATCTTAAGCAAATTTGGGAAAT
CTCTTCAACTATCACTCTGGTCCTTACGATGTTCTTATTTTTTTGCCCAA
ATTTCAGTCTAAATGTTTTTACAAATTGGGTTTAAACAAAAGAAGCTATC
TCTTTTAAATATTCATCTAAACAATTTTCTTTCATATTGACAGGCAAAAT
TGGAATCACTGGTCTCCAATTCGGGAAATTTCAATGCCCCGAACCCAAAT
CTGAAGCAATCAAATACCCCGATTGTGACCAGTACATTCGGATGATTGAC
AACTCTCCACCGGACGGTTATCGGGCGGAGTTTAACATCCCAGTCAATTA
CACCATGAAGGGTTGGAATATGGAAGTTGGTTTCACCAAAGAAATCTTAG
TTCTTGATGTTCCTCAAGGAATCAGAACACCAGCAGCCAGGAATGTCAAA
ATTTTCAGCATTGAGAATCGAGAATATAATGGCTTTATTAAGAAGAATTC
GATTTTCAAATTGGAATTCATGGTGCATTTTGATCGGAATCGTTTTAAAA
AGCGATACGTTAAGATTAATTATATTCGATTCGGTACGTTCCAATGTCGA
TTGCCATCCTTTGATCATCATTCGGTTGATATGTAACTTTTGCATCTCAA
AATTATGTCAATATATGTTCGAAATTTCCAACTGAAATTTAGAATTATCT
ATTATTGAATCGAAAAACGTTGATTTTATTTATAAAAACCGAGATTGAAA
CATTTCAACTGTTATTTTCGTGTTATTTTCCATTTTGATTTCAATCCTCC
ACATTGACGAGCCACGTGTTGGTGCAATGATATTAAAGTATAAGGTTGTA
ACAAAAATTTTATCAATAATAGACATTTCAGTTTTC Coding sequence (CDS) from alignment at scaffold_234:203369..207304- >TCONS_00053830 ID=TCONS_00053830|Name=TCONS_00053830|organism=Clytia hemisphaerica|type=CDS|length=3888bp|location=Sequence derived from alignment at scaffold_234:203369..207304- (Clytia hemisphaerica) GCAAAATTGGAATCACTGGTCTCCAATTCGGGAAATTTCAATGCCCCGAA CCCAAATCTGAAGCAATCAAATACCCCGATTGTGACCAGTACATTCGGAT GATTGACAACTCTCCACCGGACGGTTATCGGGCGGAGTTTAACATCCCAG TCAATTACACCATGAAGGGTTGGAATATGGAAGTTGGTTTCACCAAAGAA ATCTTAGTTCTTGATGTTCCTCAAGGAATCAGAACACCAGCAGCCAGGAA TGTCAAAATTTTCAGCATTGAGAATCGAGAATATAATGGCTTTATTAAGA AGAATTCGATTTTCAAATTGGAATTCATGGTGCATTTTGATCGGAATCGT TTTAAAAAGCGATACGTTAAGATTAATTATATTCGATTCGGTACGTTCCA ATGTCGATTGCCATCCTTTGATCATCATTCGGTTGATATGTAAGTGATCA CGGTTTACGTAGAGTATCAAACGATAATCGCGAGTATCGAATTTTCATCA AATTTACCGACCAACTGAGAAGACTTCGTTTGAATAGTTTCTTCAGCCTT GATATGACCATTCATCACGAACGCTGGATGAAAGGAATGTTAGAGTTACC AGTTTTACAAGAGATGACACCATATCCTGGAGATTTATTCAAAGATGGTC ATGTTATTCTCAAGTTCAACAGATCTCTAAATGCATTGGATATCCCTGAA GATGGCCTCTTTTGGAATATTTATACAGCTTGAAATTTGTCACCAATTTA TTACTTTACATAATACTGCTATATATAATCCGTTTTTAAGCCACCCTCGA AGCAGTCGTAGCAATCAGTATAAGCTCGAGATGGGGCATTTTGCAACGGC CTTTTTGTTGCTGGTTTCGTCACTGATTGGGATTGTTTATTCGAGGCCCG CAAGGGATGTTGGGAAATTTCCATGTCATGCTTTTCTGGATATAATTAAC GAATGGCCTGATGGTTATAGAGGCAAAATTGGAATCACTGGTCTCCAATT CGGGAAATTTCAATGCCCCGAACCCAAATCTGAAGCAATCAAATACCCCG ATTGTGACCAGTACATTCGGATGATTGACAACTCTCCACCGGACGGTTAT CGGGCGGAGTTTAACATCCCAGTCAATTACACCATGAAGGGTTGGAATAT GGAAGTTGGTTTCACCAAAGAAATCTTAGTTCTTGATGTTCCTCAAGGAA TCAGAACACCAGCAGCCAGGAATGTCAAAATTTTCAGCATTGAGAATCGA GAATATAATGGCTTTATTAAGAAGAATTCGATTTTCAAATTGGAATTCAT GGTGCATTTTGATCGGAATCGTTTTAAAAAGCGATACGTTAAGATTAATT ATATTCGATTCGGTACGTTCCAATGTCGATTGCCATCCTTTGATCATCAT TCGGTTGATATGTAAGTGATCACGGTTTACGTAGAGTATCAAACGATAAT CGCGAGTATCGAATTTTCATCAAATTTACCGACCAACTGAGAAGACTTCG TTTGAATAGTTTCTTCAGCCTTGATATGACCATTCATCACGAACGCTGGA TGAAAGGAATGTTAGAGTTACCAGTTTTACAAGAGATGACACCATATCCT GGAGATTTATTCAAAGATGGTCATGTTATTCTCAAGTTCAACAGATCTCT AAATGCATTGGATATCCCTGAAGATGGCCTCTTTTGGAATATTTATACAG CTTGAAATTTGTCACCAATTTATTACTTTACATAATACTGCTATATATAA TCCGTTTTTAAGCCACCCTCGAAGCAGTCGTAGCAATCAGTATAAGCTCG AGATGGGGCATTTTGCAACGGCCTTTTTGTTGCTGGTTTCGTCACTGATT GGGATTGTTTATTCGAGGCCCGCAAGGGATGTTGGGAAATTTCCATGTCA TGCTTTTCTGGATATAATTAACGAATGGCCTGATGGTTATAGAGGCAAAA TTGGAATCACTGGTCTCCAATTCGGGAAATTTCAATGCCCCGAACCCAAA TCTGAAGCAATCAAATACCCCGATTGTGACCAGTACATTCGGATGATTGA CAACTCTCCACCGGACGGTTATCGGGCGGAGTTTAACATCCCAGTCAATT ACACCATGAAGGGTTGGAATATGGAAGTTGGTTTCACCAAAGAAATCTTA GTTCTTGATGTTCCTCAAGGAATCAGAACACCAGCAGCCAGGAATGTCAA AATTTTCAGCATTGAGAATCGAGAATATAATGGCTTTATTAAGAAGAATT CGATTTTCAAATTGGAATTCATGGTGCATTTTGATCGGAATCGTTTTAAA AAGCGATACGTTAAGATTAATTATATTCGATTCGGTACGTTCCAATGTCG ATTGCCATCCTTTGATCATCATTCGGTTGATATGTAAGTGATCACGGTTT ACGTAGAGTATCAAACGATAATCGCGAGTATCGAATTTTCATCAAATTTA CCGACCAACTGAGAAGACTTCGTTTGAATAGTTTCTTCAGCCTTGATATG ACCATTCATCACGAACGCTGGATGAAAGGAATGTTAGAGTTACCAGTTTT ACAAGAGATGACACCATATCCTGGAGATTTATTCAAAGATGGTCATGTTA TTCTCAAGTTCAACAGATCTCTAAATGCATTGGATATCCCTGAAGATGGC CTCTTTTGGAATATTTATACAGCTTGAAATTTGTCACCAATTTATTACTT TACATAATACTGCTATATATAATCCGTTTTTAAGCCACCCTCGAAGCAGT CGTAGCAATCAGTATAAGCTCGAGATGGGGCATTTTGCAACGGCCTTTTT GTTGCTGGTTTCGTCACTGATTGGGATTGTTTATTCGAGGCCCGCAAGGG ATGTTGGGAAATTTCCATGTCATGCTTTTCTGGATATAATTAACGAATGG CCTGATGGTTATAGAGGCAAAATTGGAATCACTGGTCTCCAATTCGGGAA ATTTCAATGCCCCGAACCCAAATCTGAAGCAATCAAATACCCCGATTGTG ACCAGTACATTCGGATGATTGACAACTCTCCACCGGACGGTTATCGGGCG GAGTTTAACATCCCAGTCAATTACACCATGAAGGGTTGGAATATGGAAGT TGGTTTCACCAAAGAAATCTTAGTTCTTGATGTTCCTCAAGGAATCAGAA CACCAGCAGCCAGGAATGTCAAAATTTTCAGCATTGAGAATCGAGAATAT AATGGCTTTATTAAGAAGAATTCGATTTTCAAATTGGAATTCATGGTGCA TTTTGATCGGAATCGTTTTAAAAAGCGATACGTTAAGATTAATTATATTC GATTCGGTACGTTCCAATGTCGATTGCCATCCTTTGATCATCATTCGGTT GATATGTAAGTGATCACGGTTTACGTAGAGTATCAAACGATAATCGCGAG TATCGAATTTTCATCAAATTTACCGACCAACTGAGAAGACTTCGTTTGAA TAGTTTCTTCAGCCTTGATATGACCATTCATCACGAACGCTGGATGAAAG GAATGTTAGAGTTACCAGTTTTACAAGAGATGACACCATATCCTGGAGAT TTATTCAAAGATGGTCATGTTATTCTCAAGTTCAACAGATCTCTAAATGC ATTGGATATCCCTGAAGATGGCCTCTTTTGGAATATTTATACAGCTTGAA ATTTGTCACCAATTTATTACTTTACATAATACTGCTATATATAATCCGTT TTTAAGCCACCCTCGAAGCAGTCGTAGCAATCAGTATAAGCTCGAGATGG GGCATTTTGCAACGGCCTTTTTGTTGCTGGTTTCGTCACTGATTGGGATT GTTTATTCGAGGCCCGCAAGGGATGTTGGGAAATTTCCATGTCATGCTTT TCTGGATATAATTAACGAATGGCCTGATGGTTATAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00053830-exon-scaffold_234-1575043694:206984..207304 | TCONS_00053830-exon-scaffold_234-1575043694:206984..207304 | Clytia hemisphaerica | exon |
TCONS_00053830-exon-scaffold_234-1575043694:206094..206210 | TCONS_00053830-exon-scaffold_234-1575043694:206094..206210 | Clytia hemisphaerica | exon |
TCONS_00053830-exon-scaffold_234-1575043694:204904..205044 | TCONS_00053830-exon-scaffold_234-1575043694:204904..205044 | Clytia hemisphaerica | exon |
TCONS_00053830-exon-scaffold_234-1575043694:203369..204061 | TCONS_00053830-exon-scaffold_234-1575043694:203369..204061 | Clytia hemisphaerica | exon |
TCONS_00053830-exon-scaffold_234-1510915933:206984..207304 | TCONS_00053830-exon-scaffold_234-1510915933:206984..207304 | Clytia hemisphaerica | exon |
TCONS_00053830-exon-scaffold_234-1510915933:206094..206210 | TCONS_00053830-exon-scaffold_234-1510915933:206094..206210 | Clytia hemisphaerica | exon |
TCONS_00053830-exon-scaffold_234-1510915933:204904..205044 | TCONS_00053830-exon-scaffold_234-1510915933:204904..205044 | Clytia hemisphaerica | exon |
TCONS_00053830-exon-scaffold_234-1510915933:203369..204061 | TCONS_00053830-exon-scaffold_234-1510915933:203369..204061 | Clytia hemisphaerica | exon |
TCONS_00053830-exon-scaffold_234-1491911889:206984..207304 | TCONS_00053830-exon-scaffold_234-1491911889:206984..207304 | Clytia hemisphaerica | exon |
TCONS_00053830-exon-scaffold_234-1491911889:206094..206210 | TCONS_00053830-exon-scaffold_234-1491911889:206094..206210 | Clytia hemisphaerica | exon |
TCONS_00053830-exon-scaffold_234-1491911889:204904..205044 | TCONS_00053830-exon-scaffold_234-1491911889:204904..205044 | Clytia hemisphaerica | exon |
TCONS_00053830-exon-scaffold_234-1491911889:203369..204061 | TCONS_00053830-exon-scaffold_234-1491911889:203369..204061 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_234 | supercontig | scaffold_234:203369..207304 - |
Blast
The following BLAST results are available for this feature:
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